Clone Sequence Records
BS11871.3prime Sequence
753 bp (753 high quality bases) assembled on 2006-06-16
> BS11871.3prime
ATGGTCTAGAAAGCTTCTATGATTGCCGGCACTGATCCTGCTCCTCGCGC
AGATAGTCGCCGATGTGCTGCACCACCATGGCACTGCACAGCTGAGCCTG
CACCACTTGATCCTCGGCGGTCTGGTGGGTCTGCACCAGGATTAGGGATG
CATTGTGCATGGATTGGGCCATCCCCAGATTGATTTCCGCCATCGCGTTA
ATGAAACAGACACTTCCGCCAGCTGAAGCTAGAGGATTAAGCGGGGAAGC
CCCCAGCAATTGGCACTTGGCCGGCAAGTGGGCAATCTGCTGTACGAATT
CCTGTACTCTGGCCAAAGCCAGTTGACTCTCCAGACGGAAGTCTTCCAAA
AGGCTTCCCAAGTCTTCCGTACACCCACCCAGCTGATGGGTCACATTTTC
ATTGAGCTCATCCAGGCTCCAGGCTGGGTTGCAATCGGGATTGGACACCA
CTAACTGGTTTGTCTCATAGATCACATCACTTAGTTCGGCCATAGCATTG
GCGGTCAGGACCTCAATGTTACCGGCAATATTTTGCCGAGTGCGATTTAT
TTTCTCCTCCAACTGAATGGAGGTGTCGTCGCTGACACTTACGGCAATCT
CTGCCAGATTGTCCACAACCATGGTAACAGGTCCATAGTTTGTAGTCTCT
GTCTCCATCTTTGTTTCATAGCCGACTTCTTGGCAGTCTGCCAAAGTCAG
CAAAAGCAGAGCAAGTACTCCCAGAGTTTGACTCATCATGTCGACTGATA
ACT
BS11871.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11672-PA | 723 | CG11672-RA | 1..723 | 739..17 | 3615 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:40:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11672-RB | 969 | CG11672-RB | 31..753 | 739..17 | 3615 | 100 | Minus |
CG11672-RA | 1122 | CG11672-RA | 31..753 | 739..17 | 3615 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:40:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8289764..8290435 | 17..688 | 3360 | 100 | Plus |
3R | 32079331 | 3R | 8290497..8290548 | 688..739 | 260 | 100 | Plus |
Blast to na_te.dros performed 2015-01-30 17:40:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmir\spock | 4952 | Dmir\spock SPOCK 4952bp Derived from AY144571. | 2543..2567 | 415..391 | 107 | 92 | Minus |
BS11871.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:55 Download gff for
BS11871.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11672-PA | 1..723 | 17..739 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:48:52 Download gff for
BS11871.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11672-RA | 24..753 | 17..747 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:02 Download gff for
BS11871.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11672-RA | 24..753 | 17..747 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:02 Download gff for
BS11871.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8289764..8290435 | 17..688 | 100 | <- | Plus |
3R | 8290498..8290555 | 689..747 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:48:52 Download gff for
BS11871.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4115486..4116157 | 17..688 | 100 | <- | Plus |
arm_3R | 4116220..4116277 | 689..747 | 93 | | Plus |
BS11871.5prime Sequence
753 bp (753 high quality bases) assembled on 2006-06-16
> BS11871.5prime
GAAGTTATCAGTCGACATGATGAGTCAAACTCTGGGAGTACTTGCTCTGC
TTTTGCTGACTTTGGCAGACTGCCAAGAAGTCGGCTATGAAACAAAGATG
GAGACAGAGACTACAAACTATGGACCTGTTACCATGGTTGTGGACAATCT
GGCAGAGATTGCCGTAAGTGTCAGCGACGACACCTCCATTCAGTTGGAGG
AGAAAATAAATCGCACTCGGCAAAATATTGCCGGTAACATTGAGGTCCTG
ACCGCCAATGCTATGGCCGAACTAAGTGATGTGATCTATGAGACAAACCA
GTTAGTGGTGTCCAATCCCGATTGCAACCCAGCCTGGAGCCTGGATGAGC
TCAATGAAAATGTGACCCATCAGCTGGGTGGGTGTACGGAAGACTTGGGA
AGCCTTTTGGAAGACTTCCGTCTGGAGAGTCAACTGGCTTTGGCCAGAGT
ACAGGAATTCGTACAGCAGATTGCCCACTTGCCGGCCAAGTGCCAATTGC
TGGGGGCTTCCCCGCTTAATCCTCTAGCTTCAGCTGGCGGAAGTGTCTGT
TTCATTAACGCGATGGCGGAAATCAATCTGGGGATGGCCCAATCCATGCA
CAATGCATCCCTAATCCTGGTGCAGACCCACCAGACCGCCGAGGATCAAG
TGGTGCAGGCTCAGCTGTGCAGTGCCATGGTGGTGCAGCACATCGGCGAC
TATCTGCGCGAGGAGCAGGATCAGTGCCGGCAATCATAGAAGCTTTCTAG
ACC
BS11871.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11672-PA | 723 | CG11672-RA | 1..723 | 17..739 | 3615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:54:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11672-RB | 969 | CG11672-RB | 31..753 | 17..739 | 3615 | 100 | Plus |
CG11672-RA | 1122 | CG11672-RA | 31..753 | 17..739 | 3615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:53:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8289764..8290435 | 739..68 | 3360 | 100 | Minus |
3R | 32079331 | 3R | 8290497..8290548 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 15:53:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmir\spock | 4952 | Dmir\spock SPOCK 4952bp Derived from AY144571. | 2543..2567 | 341..365 | 107 | 92 | Plus |
BS11871.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:56 Download gff for
BS11871.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11672-PA | 1..723 | 17..739 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:07:50 Download gff for
BS11871.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11672-RA | 24..753 | 9..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:39:54 Download gff for
BS11871.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11672-RA | 24..753 | 9..739 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:39:54 Download gff for
BS11871.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8289764..8290435 | 68..739 | 100 | <- | Minus |
3R | 8290498..8290555 | 9..67 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:07:50 Download gff for
BS11871.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4115486..4116157 | 68..739 | 100 | <- | Minus |
arm_3R | 4116220..4116277 | 9..67 | 93 | | Minus |
BS11871.complete Sequence
755 bp assembled on 2006-11-01
GenBank Submission: FJ637007
> BS11871.complete
GAAGTTATCAGTCGACATGATGAGTCAAACTCTGGGAGTACTTGCTCTGC
TTTTGCTGACTTTGGCAGACTGCCAAGAAGTCGGCTATGAAACAAAGATG
GAGACAGAGACTACAAACTATGGACCTGTTACCATGGTTGTGGACAATCT
GGCAGAGATTGCCGTAAGTGTCAGCGACGACACCTCCATTCAGTTGGAGG
AGAAAATAAATCGCACTCGGCAAAATATTGCCGGTAACATTGAGGTCCTG
ACCGCCAATGCTATGGCCGAACTAAGTGATGTGATCTATGAGACAAACCA
GTTAGTGGTGTCCAATCCCGATTGCAACCCAGCCTGGAGCCTGGATGAGC
TCAATGAAAATGTGACCCATCAGCTGGGTGGGTGTACGGAAGACTTGGGA
AGCCTTTTGGAAGACTTCCGTCTGGAGAGTCAACTGGCTTTGGCCAGAGT
ACAGGAATTCGTACAGCAGATTGCCCACTTGCCGGCCAAGTGCCAATTGC
TGGGGGCTTCCCCGCTTAATCCTCTAGCTTCAGCTGGCGGAAGTGTCTGT
TTCATTAACGCGATGGCGGAAATCAATCTGGGGATGGCCCAATCCATGCA
CAATGCATCCCTAATCCTGGTGCAGACCCACCAGACCGCCGAGGATCAAG
TGGTGCAGGCTCAGCTGTGCAGTGCCATGGTGGTGCAGCACATCGGCGAC
TATCTGCGCGAGGAGCAGGATCAGTGCCGGCAATCATAGAAGCTTTCTAG
ACCAT
BS11871.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:20:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11672-RB | 723 | CG11672-PB | 1..723 | 17..739 | 3615 | 100 | Plus |
CG11672-RA | 723 | CG11672-PA | 1..723 | 17..739 | 3615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11672-RB | 969 | CG11672-RB | 31..753 | 17..739 | 3615 | 100 | Plus |
CG11672-RA | 1122 | CG11672-RA | 31..753 | 17..739 | 3615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8289764..8290435 | 739..68 | 3360 | 100 | Minus |
3R | 32079331 | 3R | 8290497..8290548 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:20:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmir\spock | 4952 | Dmir\spock SPOCK 4952bp Derived from AY144571. | 2543..2567 | 341..365 | 107 | 92 | Plus |
BS11871.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:54 Download gff for
BS11871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11672-RA | 1..723 | 17..739 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:04 Download gff for
BS11871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11672-RA | 11..740 | 9..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:19 Download gff for
BS11871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11672-RA | 31..753 | 17..739 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:54 Download gff for
BS11871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11672-RA | 11..740 | 9..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:07 Download gff for
BS11871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11672-RA | 31..753 | 17..739 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:07 Download gff for
BS11871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8290498..8290548 | 17..67 | 100 | | Minus |
3R | 8289764..8290435 | 68..739 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:19 Download gff for
BS11871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4115486..4116157 | 68..739 | 100 | <- | Minus |
arm_3R | 4116220..4116270 | 17..67 | 100 | | Minus |
BS11871.pep Sequence
Translation from 16 to 738
> BS11871.pep
MMSQTLGVLALLLLTLADCQEVGYETKMETETTNYGPVTMVVDNLAEIAV
SVSDDTSIQLEEKINRTRQNIAGNIEVLTANAMAELSDVIYETNQLVVSN
PDCNPAWSLDELNENVTHQLGGCTEDLGSLLEDFRLESQLALARVQEFVQ
QIAHLPAKCQLLGASPLNPLASAGGSVCFINAMAEINLGMAQSMHNASLI
LVQTHQTAEDQVVQAQLCSAMVVQHIGDYLREEQDQCRQS*
BS11871.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11672-PB | 240 | CG11672-PB | 1..240 | 1..240 | 1210 | 100 | Plus |
CG11672-PA | 240 | CG11672-PA | 1..240 | 1..240 | 1210 | 100 | Plus |