Clone BS11871 Report

Search the DGRC for BS11871

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:118
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG11672-RA
Protein status:BS11871.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11871.3prime Sequence

753 bp (753 high quality bases) assembled on 2006-06-16

> BS11871.3prime
ATGGTCTAGAAAGCTTCTATGATTGCCGGCACTGATCCTGCTCCTCGCGC
AGATAGTCGCCGATGTGCTGCACCACCATGGCACTGCACAGCTGAGCCTG
CACCACTTGATCCTCGGCGGTCTGGTGGGTCTGCACCAGGATTAGGGATG
CATTGTGCATGGATTGGGCCATCCCCAGATTGATTTCCGCCATCGCGTTA
ATGAAACAGACACTTCCGCCAGCTGAAGCTAGAGGATTAAGCGGGGAAGC
CCCCAGCAATTGGCACTTGGCCGGCAAGTGGGCAATCTGCTGTACGAATT
CCTGTACTCTGGCCAAAGCCAGTTGACTCTCCAGACGGAAGTCTTCCAAA
AGGCTTCCCAAGTCTTCCGTACACCCACCCAGCTGATGGGTCACATTTTC
ATTGAGCTCATCCAGGCTCCAGGCTGGGTTGCAATCGGGATTGGACACCA
CTAACTGGTTTGTCTCATAGATCACATCACTTAGTTCGGCCATAGCATTG
GCGGTCAGGACCTCAATGTTACCGGCAATATTTTGCCGAGTGCGATTTAT
TTTCTCCTCCAACTGAATGGAGGTGTCGTCGCTGACACTTACGGCAATCT
CTGCCAGATTGTCCACAACCATGGTAACAGGTCCATAGTTTGTAGTCTCT
GTCTCCATCTTTGTTTCATAGCCGACTTCTTGGCAGTCTGCCAAAGTCAG
CAAAAGCAGAGCAAGTACTCCCAGAGTTTGACTCATCATGTCGACTGATA
ACT

BS11871.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG11672-PA 723 CG11672-RA 1..723 739..17 3615 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:40:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG11672-RB 969 CG11672-RB 31..753 739..17 3615 100 Minus
CG11672-RA 1122 CG11672-RA 31..753 739..17 3615 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:40:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8289764..8290435 17..688 3360 100 Plus
3R 32079331 3R 8290497..8290548 688..739 260 100 Plus
Blast to na_te.dros performed 2015-01-30 17:40:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\spock 4952 Dmir\spock SPOCK 4952bp Derived from AY144571. 2543..2567 415..391 107 92 Minus

BS11871.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:55 Download gff for BS11871.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11672-PA 1..723 17..739 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:48:52 Download gff for BS11871.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11672-RA 24..753 17..747 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:02 Download gff for BS11871.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11672-RA 24..753 17..747 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:02 Download gff for BS11871.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8289764..8290435 17..688 100 <- Plus
3R 8290498..8290555 689..747 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:48:52 Download gff for BS11871.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4115486..4116157 17..688 100 <- Plus
arm_3R 4116220..4116277 689..747 93   Plus

BS11871.5prime Sequence

753 bp (753 high quality bases) assembled on 2006-06-16

> BS11871.5prime
GAAGTTATCAGTCGACATGATGAGTCAAACTCTGGGAGTACTTGCTCTGC
TTTTGCTGACTTTGGCAGACTGCCAAGAAGTCGGCTATGAAACAAAGATG
GAGACAGAGACTACAAACTATGGACCTGTTACCATGGTTGTGGACAATCT
GGCAGAGATTGCCGTAAGTGTCAGCGACGACACCTCCATTCAGTTGGAGG
AGAAAATAAATCGCACTCGGCAAAATATTGCCGGTAACATTGAGGTCCTG
ACCGCCAATGCTATGGCCGAACTAAGTGATGTGATCTATGAGACAAACCA
GTTAGTGGTGTCCAATCCCGATTGCAACCCAGCCTGGAGCCTGGATGAGC
TCAATGAAAATGTGACCCATCAGCTGGGTGGGTGTACGGAAGACTTGGGA
AGCCTTTTGGAAGACTTCCGTCTGGAGAGTCAACTGGCTTTGGCCAGAGT
ACAGGAATTCGTACAGCAGATTGCCCACTTGCCGGCCAAGTGCCAATTGC
TGGGGGCTTCCCCGCTTAATCCTCTAGCTTCAGCTGGCGGAAGTGTCTGT
TTCATTAACGCGATGGCGGAAATCAATCTGGGGATGGCCCAATCCATGCA
CAATGCATCCCTAATCCTGGTGCAGACCCACCAGACCGCCGAGGATCAAG
TGGTGCAGGCTCAGCTGTGCAGTGCCATGGTGGTGCAGCACATCGGCGAC
TATCTGCGCGAGGAGCAGGATCAGTGCCGGCAATCATAGAAGCTTTCTAG
ACC

BS11871.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG11672-PA 723 CG11672-RA 1..723 17..739 3615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:54:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG11672-RB 969 CG11672-RB 31..753 17..739 3615 100 Plus
CG11672-RA 1122 CG11672-RA 31..753 17..739 3615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:53:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8289764..8290435 739..68 3360 100 Minus
3R 32079331 3R 8290497..8290548 68..17 260 100 Minus
Blast to na_te.dros performed 2015-02-10 15:53:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\spock 4952 Dmir\spock SPOCK 4952bp Derived from AY144571. 2543..2567 341..365 107 92 Plus

BS11871.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:56 Download gff for BS11871.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11672-PA 1..723 17..739 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:07:50 Download gff for BS11871.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11672-RA 24..753 9..739 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:39:54 Download gff for BS11871.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11672-RA 24..753 9..739 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:39:54 Download gff for BS11871.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8289764..8290435 68..739 100 <- Minus
3R 8290498..8290555 9..67 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:07:50 Download gff for BS11871.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4115486..4116157 68..739 100 <- Minus
arm_3R 4116220..4116277 9..67 93   Minus

BS11871.complete Sequence

755 bp assembled on 2006-11-01

GenBank Submission: FJ637007

> BS11871.complete
GAAGTTATCAGTCGACATGATGAGTCAAACTCTGGGAGTACTTGCTCTGC
TTTTGCTGACTTTGGCAGACTGCCAAGAAGTCGGCTATGAAACAAAGATG
GAGACAGAGACTACAAACTATGGACCTGTTACCATGGTTGTGGACAATCT
GGCAGAGATTGCCGTAAGTGTCAGCGACGACACCTCCATTCAGTTGGAGG
AGAAAATAAATCGCACTCGGCAAAATATTGCCGGTAACATTGAGGTCCTG
ACCGCCAATGCTATGGCCGAACTAAGTGATGTGATCTATGAGACAAACCA
GTTAGTGGTGTCCAATCCCGATTGCAACCCAGCCTGGAGCCTGGATGAGC
TCAATGAAAATGTGACCCATCAGCTGGGTGGGTGTACGGAAGACTTGGGA
AGCCTTTTGGAAGACTTCCGTCTGGAGAGTCAACTGGCTTTGGCCAGAGT
ACAGGAATTCGTACAGCAGATTGCCCACTTGCCGGCCAAGTGCCAATTGC
TGGGGGCTTCCCCGCTTAATCCTCTAGCTTCAGCTGGCGGAAGTGTCTGT
TTCATTAACGCGATGGCGGAAATCAATCTGGGGATGGCCCAATCCATGCA
CAATGCATCCCTAATCCTGGTGCAGACCCACCAGACCGCCGAGGATCAAG
TGGTGCAGGCTCAGCTGTGCAGTGCCATGGTGGTGCAGCACATCGGCGAC
TATCTGCGCGAGGAGCAGGATCAGTGCCGGCAATCATAGAAGCTTTCTAG
ACCAT

BS11871.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:20:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG11672-RB 723 CG11672-PB 1..723 17..739 3615 100 Plus
CG11672-RA 723 CG11672-PA 1..723 17..739 3615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG11672-RB 969 CG11672-RB 31..753 17..739 3615 100 Plus
CG11672-RA 1122 CG11672-RA 31..753 17..739 3615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8289764..8290435 739..68 3360 100 Minus
3R 32079331 3R 8290497..8290548 68..17 260 100 Minus
Blast to na_te.dros performed 2014-11-27 14:20:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\spock 4952 Dmir\spock SPOCK 4952bp Derived from AY144571. 2543..2567 341..365 107 92 Plus

BS11871.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:54 Download gff for BS11871.complete
Subject Subject Range Query Range Percent Splice Strand
CG11672-RA 1..723 17..739 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:04 Download gff for BS11871.complete
Subject Subject Range Query Range Percent Splice Strand
CG11672-RA 11..740 9..739 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:19 Download gff for BS11871.complete
Subject Subject Range Query Range Percent Splice Strand
CG11672-RA 31..753 17..739 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:54 Download gff for BS11871.complete
Subject Subject Range Query Range Percent Splice Strand
CG11672-RA 11..740 9..739 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:07 Download gff for BS11871.complete
Subject Subject Range Query Range Percent Splice Strand
CG11672-RA 31..753 17..739 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:07 Download gff for BS11871.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8290498..8290548 17..67 100   Minus
3R 8289764..8290435 68..739 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:19 Download gff for BS11871.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4115486..4116157 68..739 100 <- Minus
arm_3R 4116220..4116270 17..67 100   Minus

BS11871.pep Sequence

Translation from 16 to 738

> BS11871.pep
MMSQTLGVLALLLLTLADCQEVGYETKMETETTNYGPVTMVVDNLAEIAV
SVSDDTSIQLEEKINRTRQNIAGNIEVLTANAMAELSDVIYETNQLVVSN
PDCNPAWSLDELNENVTHQLGGCTEDLGSLLEDFRLESQLALARVQEFVQ
QIAHLPAKCQLLGASPLNPLASAGGSVCFINAMAEINLGMAQSMHNASLI
LVQTHQTAEDQVVQAQLCSAMVVQHIGDYLREEQDQCRQS*

BS11871.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG11672-PB 240 CG11672-PB 1..240 1..240 1210 100 Plus
CG11672-PA 240 CG11672-PA 1..240 1..240 1210 100 Plus