Clone Sequence Records
BS11872.3prime Sequence
576 bp (576 high quality bases) assembled on 2006-06-16
> BS11872.3prime
ATGGTCTAGAAAGCTTTTAGAAGAAGTATGGGGCGGGAGCGAACTTGGGG
GCCACAGCCAGAGGCGCTGGGACTGGAGCAGCCAGGGGAGCGGCGAAGGG
TCCGAATCCGAACTTGGCTGGTGCGGCGAAGGCAACAGGCGCCGGAGCAG
GGGCGAAGCCCAGAGGAGCAGCCACCGGAGCGGGAGCGGCGAAGGCAACC
TTGGCGGGAGCAGCAAAGGCCACCGGAGCAGGAGCAGCAGCCACTGGCAG
AGGAGCAGGAGCGGCAAAGGCCACTGGAGCGGGAGCAGCAACTGGAACGG
GCAGGGGAGCGGGAAGGGGAGCAGCGAAGGCCACTGGAGCTGGAGCAGGA
GCCACTGGGTATGCCACGGCGTGGTTGATGCGGTGGGCATTGAAGCTGGA
GGCATATGGAGCCACCACTCCGGCGGTAGCCACAGGAGCAGCCAGGGGAG
CTGCGAAGGCAGGAGCAAGTGGAGCAGCCAGTGGAGCCGGAGCATGGAAA
GGAAGGAGACCAGCCTGAGCAGAGGCCACGCAGAGGGCAACGAGCACAAT
CTTGGCGAACATGTCGACTGATAACT
BS11872.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:08:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13049-PB | 672 | CG13049-RB | 127..672 | 562..17 | 2730 | 100 | Minus |
CG13049-PA | 546 | CG13049-RA | 1..546 | 562..17 | 2730 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:23:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13049-RA | 736 | CG13049-RA | 65..610 | 562..17 | 2730 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:22:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16281258..16281786 | 17..545 | 2645 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 16:22:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2758..2872 | 254..371 | 115 | 56.8 | Plus |
BS11872.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:56 Download gff for
BS11872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13049-PA | 1..546 | 17..562 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:05:26 Download gff for
BS11872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13049-RA | 65..616 | 11..562 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:46:20 Download gff for
BS11872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13049-RA | 65..616 | 11..562 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:46:20 Download gff for
BS11872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16281252..16281785 | 11..544 | 99 | <- | Plus |
3L | 16281849..16281866 | 545..562 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:05:26 Download gff for
BS11872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16274352..16274885 | 11..544 | 99 | <- | Plus |
arm_3L | 16274949..16274966 | 545..562 | 100 | | Plus |
BS11872.5prime Sequence
576 bp (576 high quality bases) assembled on 2006-06-16
> BS11872.5prime
GAAGTTATCAGTCGACATGTTCGCCAAGATTGTGCTCGTTGCCCTCTGCG
TGGCCTCTGCTCAGGCTGGTCTCCTTCCTTTCCATGCTCCGGCTCCACTG
GCTGCTCCACTTGCTCCTGCCTTCGCAGCTCCCCTGGCTGCTCCTGTGGC
TACCGCCGGAGTGGTGGCTCCATATGCCTCCAGCTTCAATGCCCACCGCA
TCAACCACGCCGTGGCATACCCAGTGGCTCCTGCTCCAGCTCCAGTGGCC
TTCGCTGCTCCCCTTCCCGCTCCCCTGCCCGTTCCAGTTGCTGCTCCCGC
TCCAGTGGCCTTTGCCGCTCCTGCTCCTCTGCCAGTGGCTGCTGCTCCTG
CTCCGGTGGCCTTTGCTGCTCCCGCCAAGGTTGCCTTCGCCGCTCCCGCT
CCGGTGGCTGCTCCTCTGGGCTTCGCCCCTGCTCCGGCGCCTGTTGCCTT
CGCCGCACCAGCCAAGTTCGGATTCGGACCCTTCGCCGCTCCCCTGGCTG
CTCCAGTCCCAGCGCCTCTGGCTGTGGCCCCCAAGTTCGCTCCCGCCCCA
TACTTCTTCTAAAAGCTTTCTAGACC
BS11872.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:08:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13049-PB | 672 | CG13049-RB | 127..672 | 17..562 | 2730 | 100 | Plus |
CG13049-PA | 546 | CG13049-RA | 1..546 | 17..562 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:54:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13049-RA | 736 | CG13049-RA | 65..610 | 17..562 | 2730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:54:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16281258..16281786 | 562..34 | 2645 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 18:54:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2758..2872 | 325..208 | 115 | 56.8 | Minus |
BS11872.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:56 Download gff for
BS11872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13049-PA | 1..546 | 17..562 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:59:24 Download gff for
BS11872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13049-RA | 65..616 | 17..568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:27:21 Download gff for
BS11872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13049-RA | 65..616 | 17..568 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:27:21 Download gff for
BS11872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16281252..16281785 | 35..568 | 99 | <- | Minus |
3L | 16281849..16281866 | 17..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:59:24 Download gff for
BS11872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16274352..16274885 | 35..568 | 99 | <- | Minus |
arm_3L | 16274949..16274966 | 17..34 | 100 | | Minus |
BS11872.complete Sequence
578 bp assembled on 2007-10-17
GenBank Submission: FJ637008
> BS11872.complete
GAAGTTATCAGTCGACATGTTCGCCAAGATTGTGCTCGTTGCCCTCTGCG
TGGCCTCTGCTCAGGCTGGTCTCCTTCCTTTCCATGCTCCGGCTCCACTG
GCTGCTCCACTTGCTCCTGCCTTCGCAGCTCCCCTGGCTGCTCCTGTGGC
TACCGCCGGAGTGGTGGCTCCATATGCCTCCAGCTTCAATGCCCACCGCA
TCAACCACGCCGTGGCATACCCAGTGGCTCCTGCTCCAGCTCCAGTGGCC
TTCGCTGCTCCCCTTCCCGCTCCCCTGCCCGTTCCAGTTGCTGCTCCCGC
TCCAGTGGCCTTTGCCGCTCCTGCTCCTCTGCCAGTGGCTGCTGCTCCTG
CTCCGGTGGCCTTTGCTGCTCCCGCCAAGGTTGCCTTCGCCGCTCCCGCT
CCGGTGGCTGCTCCTCTGGGCTTCGCCCCTGCTCCGGCGCCTGTTGCCTT
CGCCGCACCAGCCAAGTTCGGATTCGGACCCTTCGCCGCTCCCCTGGCTG
CTCCAGTCCCAGCGCCTCTGGCTGTGGCCCCCAAGTTCGCTCCCGCCCCA
TACTTCTTCTAAAAGCTTTCTAGACCAT
BS11872.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:45:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13049-RA | 546 | CG13049-PA | 1..546 | 17..562 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:45:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13049-RA | 736 | CG13049-RA | 65..610 | 17..562 | 2730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:45:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16281258..16281786 | 562..34 | 2645 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:45:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2758..2872 | 325..208 | 115 | 56.8 | Minus |
BS11872.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:50 Download gff for
BS11872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13049-RA | 1..546 | 17..562 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:10:53 Download gff for
BS11872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13049-RB | 127..678 | 17..568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:07 Download gff for
BS11872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13049-RA | 70..608 | 22..560 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:50:12 Download gff for
BS11872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13049-RB | 132..670 | 22..560 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:29 Download gff for
BS11872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13049-RA | 70..608 | 22..560 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:29 Download gff for
BS11872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16281260..16281785 | 35..560 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:07 Download gff for
BS11872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16274360..16274885 | 35..560 | 100 | <- | Minus |
BS11872.pep Sequence
Translation from 16 to 561
> BS11872.pep
MFAKIVLVALCVASAQAGLLPFHAPAPLAAPLAPAFAAPLAAPVATAGVV
APYASSFNAHRINHAVAYPVAPAPAPVAFAAPLPAPLPVPVAAPAPVAFA
APAPLPVAAAPAPVAFAAPAKVAFAAPAPVAAPLGFAPAPAPVAFAAPAK
FGFGPFAAPLAAPVPAPLAVAPKFAPAPYFF*
BS11872.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:38:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13049-PA | 181 | CG13049-PA | 1..181 | 1..181 | 924 | 100 | Plus |
CG10953-PB | 278 | CG10953-PB | 62..241 | 21..178 | 241 | 40.9 | Plus |
CG10953-PA | 278 | CG10953-PA | 62..241 | 21..178 | 241 | 40.9 | Plus |
CG31626-PB | 285 | CG31626-PB | 53..246 | 12..180 | 239 | 41.3 | Plus |
CG14095-PA | 162 | CG14095-PA | 4..160 | 2..149 | 235 | 44.2 | Plus |
CG10953-PB | 278 | CG10953-PB | 29..156 | 24..178 | 228 | 36.8 | Plus |
CG10953-PB | 278 | CG10953-PB | 53..227 | 24..178 | 228 | 40.7 | Plus |
CG10953-PA | 278 | CG10953-PA | 29..156 | 24..178 | 228 | 36.8 | Plus |
CG10953-PA | 278 | CG10953-PA | 53..227 | 24..178 | 228 | 40.7 | Plus |
CG10953-PB | 278 | CG10953-PB | 103..244 | 21..168 | 223 | 41.8 | Plus |
CG10953-PA | 278 | CG10953-PA | 103..244 | 21..168 | 223 | 41.8 | Plus |
CG10953-PB | 278 | CG10953-PB | 28..137 | 72..178 | 216 | 48.3 | Plus |
CG10953-PA | 278 | CG10953-PA | 28..137 | 72..178 | 216 | 48.3 | Plus |
CG10953-PB | 278 | CG10953-PB | 25..105 | 99..178 | 153 | 49.4 | Plus |
CG10953-PA | 278 | CG10953-PA | 25..105 | 99..178 | 153 | 49.4 | Plus |