Clone BS11872 Report

Search the DGRC for BS11872

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:118
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG13049-RA
Protein status:BS11872.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11872.3prime Sequence

576 bp (576 high quality bases) assembled on 2006-06-16

> BS11872.3prime
ATGGTCTAGAAAGCTTTTAGAAGAAGTATGGGGCGGGAGCGAACTTGGGG
GCCACAGCCAGAGGCGCTGGGACTGGAGCAGCCAGGGGAGCGGCGAAGGG
TCCGAATCCGAACTTGGCTGGTGCGGCGAAGGCAACAGGCGCCGGAGCAG
GGGCGAAGCCCAGAGGAGCAGCCACCGGAGCGGGAGCGGCGAAGGCAACC
TTGGCGGGAGCAGCAAAGGCCACCGGAGCAGGAGCAGCAGCCACTGGCAG
AGGAGCAGGAGCGGCAAAGGCCACTGGAGCGGGAGCAGCAACTGGAACGG
GCAGGGGAGCGGGAAGGGGAGCAGCGAAGGCCACTGGAGCTGGAGCAGGA
GCCACTGGGTATGCCACGGCGTGGTTGATGCGGTGGGCATTGAAGCTGGA
GGCATATGGAGCCACCACTCCGGCGGTAGCCACAGGAGCAGCCAGGGGAG
CTGCGAAGGCAGGAGCAAGTGGAGCAGCCAGTGGAGCCGGAGCATGGAAA
GGAAGGAGACCAGCCTGAGCAGAGGCCACGCAGAGGGCAACGAGCACAAT
CTTGGCGAACATGTCGACTGATAACT

BS11872.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:08:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG13049-PB 672 CG13049-RB 127..672 562..17 2730 100 Minus
CG13049-PA 546 CG13049-RA 1..546 562..17 2730 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:23:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG13049-RA 736 CG13049-RA 65..610 562..17 2730 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:22:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16281258..16281786 17..545 2645 100 Plus
Blast to na_te.dros performed 2015-02-12 16:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2758..2872 254..371 115 56.8 Plus

BS11872.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:56 Download gff for BS11872.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13049-PA 1..546 17..562 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:05:26 Download gff for BS11872.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13049-RA 65..616 11..562 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:46:20 Download gff for BS11872.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13049-RA 65..616 11..562 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:46:20 Download gff for BS11872.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16281252..16281785 11..544 99 <- Plus
3L 16281849..16281866 545..562 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:05:26 Download gff for BS11872.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16274352..16274885 11..544 99 <- Plus
arm_3L 16274949..16274966 545..562 100   Plus

BS11872.5prime Sequence

576 bp (576 high quality bases) assembled on 2006-06-16

> BS11872.5prime
GAAGTTATCAGTCGACATGTTCGCCAAGATTGTGCTCGTTGCCCTCTGCG
TGGCCTCTGCTCAGGCTGGTCTCCTTCCTTTCCATGCTCCGGCTCCACTG
GCTGCTCCACTTGCTCCTGCCTTCGCAGCTCCCCTGGCTGCTCCTGTGGC
TACCGCCGGAGTGGTGGCTCCATATGCCTCCAGCTTCAATGCCCACCGCA
TCAACCACGCCGTGGCATACCCAGTGGCTCCTGCTCCAGCTCCAGTGGCC
TTCGCTGCTCCCCTTCCCGCTCCCCTGCCCGTTCCAGTTGCTGCTCCCGC
TCCAGTGGCCTTTGCCGCTCCTGCTCCTCTGCCAGTGGCTGCTGCTCCTG
CTCCGGTGGCCTTTGCTGCTCCCGCCAAGGTTGCCTTCGCCGCTCCCGCT
CCGGTGGCTGCTCCTCTGGGCTTCGCCCCTGCTCCGGCGCCTGTTGCCTT
CGCCGCACCAGCCAAGTTCGGATTCGGACCCTTCGCCGCTCCCCTGGCTG
CTCCAGTCCCAGCGCCTCTGGCTGTGGCCCCCAAGTTCGCTCCCGCCCCA
TACTTCTTCTAAAAGCTTTCTAGACC

BS11872.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG13049-PB 672 CG13049-RB 127..672 17..562 2730 100 Plus
CG13049-PA 546 CG13049-RA 1..546 17..562 2730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:54:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG13049-RA 736 CG13049-RA 65..610 17..562 2730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16281258..16281786 562..34 2645 100 Minus
Blast to na_te.dros performed 2015-02-11 18:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2758..2872 325..208 115 56.8 Minus

BS11872.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:56 Download gff for BS11872.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13049-PA 1..546 17..562 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:59:24 Download gff for BS11872.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13049-RA 65..616 17..568 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:27:21 Download gff for BS11872.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13049-RA 65..616 17..568 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:27:21 Download gff for BS11872.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16281252..16281785 35..568 99 <- Minus
3L 16281849..16281866 17..34 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:59:24 Download gff for BS11872.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16274352..16274885 35..568 99 <- Minus
arm_3L 16274949..16274966 17..34 100   Minus

BS11872.complete Sequence

578 bp assembled on 2007-10-17

GenBank Submission: FJ637008

> BS11872.complete
GAAGTTATCAGTCGACATGTTCGCCAAGATTGTGCTCGTTGCCCTCTGCG
TGGCCTCTGCTCAGGCTGGTCTCCTTCCTTTCCATGCTCCGGCTCCACTG
GCTGCTCCACTTGCTCCTGCCTTCGCAGCTCCCCTGGCTGCTCCTGTGGC
TACCGCCGGAGTGGTGGCTCCATATGCCTCCAGCTTCAATGCCCACCGCA
TCAACCACGCCGTGGCATACCCAGTGGCTCCTGCTCCAGCTCCAGTGGCC
TTCGCTGCTCCCCTTCCCGCTCCCCTGCCCGTTCCAGTTGCTGCTCCCGC
TCCAGTGGCCTTTGCCGCTCCTGCTCCTCTGCCAGTGGCTGCTGCTCCTG
CTCCGGTGGCCTTTGCTGCTCCCGCCAAGGTTGCCTTCGCCGCTCCCGCT
CCGGTGGCTGCTCCTCTGGGCTTCGCCCCTGCTCCGGCGCCTGTTGCCTT
CGCCGCACCAGCCAAGTTCGGATTCGGACCCTTCGCCGCTCCCCTGGCTG
CTCCAGTCCCAGCGCCTCTGGCTGTGGCCCCCAAGTTCGCTCCCGCCCCA
TACTTCTTCTAAAAGCTTTCTAGACCAT

BS11872.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:45:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG13049-RA 546 CG13049-PA 1..546 17..562 2730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:45:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG13049-RA 736 CG13049-RA 65..610 17..562 2730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:45:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16281258..16281786 562..34 2645 100 Minus
Blast to na_te.dros performed 2014-11-28 00:45:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2758..2872 325..208 115 56.8 Minus

BS11872.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:50 Download gff for BS11872.complete
Subject Subject Range Query Range Percent Splice Strand
CG13049-RA 1..546 17..562 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:10:53 Download gff for BS11872.complete
Subject Subject Range Query Range Percent Splice Strand
CG13049-RB 127..678 17..568 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:07 Download gff for BS11872.complete
Subject Subject Range Query Range Percent Splice Strand
CG13049-RA 70..608 22..560 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:50:12 Download gff for BS11872.complete
Subject Subject Range Query Range Percent Splice Strand
CG13049-RB 132..670 22..560 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:29 Download gff for BS11872.complete
Subject Subject Range Query Range Percent Splice Strand
CG13049-RA 70..608 22..560 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:29 Download gff for BS11872.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16281260..16281785 35..560 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:07 Download gff for BS11872.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16274360..16274885 35..560 100 <- Minus

BS11872.pep Sequence

Translation from 16 to 561

> BS11872.pep
MFAKIVLVALCVASAQAGLLPFHAPAPLAAPLAPAFAAPLAAPVATAGVV
APYASSFNAHRINHAVAYPVAPAPAPVAFAAPLPAPLPVPVAAPAPVAFA
APAPLPVAAAPAPVAFAAPAKVAFAAPAPVAAPLGFAPAPAPVAFAAPAK
FGFGPFAAPLAAPVPAPLAVAPKFAPAPYFF*

BS11872.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG13049-PA 181 CG13049-PA 1..181 1..181 924 100 Plus
CG10953-PB 278 CG10953-PB 62..241 21..178 241 40.9 Plus
CG10953-PA 278 CG10953-PA 62..241 21..178 241 40.9 Plus
CG31626-PB 285 CG31626-PB 53..246 12..180 239 41.3 Plus
CG14095-PA 162 CG14095-PA 4..160 2..149 235 44.2 Plus
CG10953-PB 278 CG10953-PB 29..156 24..178 228 36.8 Plus
CG10953-PB 278 CG10953-PB 53..227 24..178 228 40.7 Plus
CG10953-PA 278 CG10953-PA 29..156 24..178 228 36.8 Plus
CG10953-PA 278 CG10953-PA 53..227 24..178 228 40.7 Plus
CG10953-PB 278 CG10953-PB 103..244 21..168 223 41.8 Plus
CG10953-PA 278 CG10953-PA 103..244 21..168 223 41.8 Plus
CG10953-PB 278 CG10953-PB 28..137 72..178 216 48.3 Plus
CG10953-PA 278 CG10953-PA 28..137 72..178 216 48.3 Plus
CG10953-PB 278 CG10953-PB 25..105 99..178 153 49.4 Plus
CG10953-PA 278 CG10953-PA 25..105 99..178 153 49.4 Plus