BS11873.complete Sequence
3644 bp assembled on 2009-12-07
GenBank Submission: KX804930
> BS11873.complete
GAAGTTATCAGTCGACATGCATGGACATCACAACCACAACCATCTGCCGC
AGCAGCAGCCACAAAATCCGCAGGAGCAGCAGTCGGGTGCCATCATGAAG
GCAGCCAACCAGCCCCACCATCCCGCCCACAGCCATCCGCTCAATCACCC
ACATCCGCACCAGCATGCCCAGCCACATCCGCATCCACATCCCCATCCGC
ATCACAAGCTGTCGGCGAGAAGGGCGCGCAGTCGCAGTCGAAGTCGCAGT
CCGACGCCGGATGGCAATCAGGACTACGATGTGACCAGGATGCGGGAGGA
GGACTTCGAGCGGCTGGCCGTCTACCTGGTGCCGGATGTCCAGGCGGAGC
GGGGACTGCCCAATCGGGCGGACAAGACGCTGCCGCGCAGCCTGACGCTC
AAGTCATCCATGGTCTACTCAACGCCAAATGTTAAGACTGAAGGAGTTTG
GAGCAGCGGGGTCATCCCACGTGGCACTCGCTTTGGCCCATTCGAAGGCA
TTCCAACCTCTAATTATCCCAATGATAAGAATAAGGCGCGCTATTTCTGG
CGGATCTTCAAGGACGATGACTACTATTACTTGGATGGTTCCGATCGCTC
GCAGTCCAATTGGATGCGCTATGTGGCCTCCGCTTATAGTTTATCCGTAA
TGAACCTGGTGGCGTGCCAGCACCAGGAGAACATCTATTTCTACACCACC
CGCGACATTCTGCCCAACGAGGAGCTAATGGTTTGGTACTGCAAGGACTT
CGCCAGTCGCCTGGGCTACGATGTGGATCCTGAGACGACGATCTTCGGCG
CATGCAAGCAGGCTGTGGAAGCGGAGGAGGAGGCGGACGAGGAGGAGGAA
GAGGCGGAGGGAGAGGACGGAAAGCCGCGATACTCGATGCCAGCTCCGGA
AATTCCACCCGATGTGGCCGTGAGTCACATAACCTACGTCATGGGTCTCC
ATCTGCCTGTGGGAGCGGGAAATGGTCCGGCGAATGGTTCGGTTGCGGGT
TCCGTTTCCGGTGCCACACCTCCACCACCGACTGCCACGCCATGCTGCCG
CCGCTCCAGTCCACCCGCCCACGTCAGCACCACCACCTCCACTTGCAACG
CCCACCACCCGCACATCCAGCATGGTCGACATGCCTCCGTAATCATCGGC
CAGGATCGATCGCCTATGGCCAGCAGTGACAAGGATACGGCGGGATCTCC
CCTTTCCGGTCTGGACCATCAGATGACCCCGCAGGATGGCAGCGTGAGGT
CTGTGAGATCGGACGAGGGCTACCACAGCAACGAGTGCCACGAGGATGGA
CTCACACCACCCGAGGATTCCAGCGACAGCGAGAGTGAACATAACTACGT
GCTGGACTGCTCGAAGAAGGCAATTGCTCCCAAAGAGACAGTGATTGCCC
AGGCCCAAAAGCCCAGCAGTTCTCCACCGGCAGTGGTAATGGCCAACACG
ACTACCAACTCGATGATTAGCCACAGTTCACCCACTGCGACGCCCATTTG
CGAAACGGACAAGAATGAGTATAGAAAGTTCAAGGTGAAAATGCCGCTGA
AGTACGAGTTCAAGAACAAGACCTGCGTAAAACAGGAGCCAAGCCTTAAG
GAAGTGGACCAGGAGATGTCCTTGCCGCAGGAGGAGGAGGAGGATCAGGT
GATGCATCCGGAACCCGATTCAATTTGCCCATCGACCACCACCCATCTGG
GCGATGAGCACATGCTGATGATGGAGCGGGAACGGGAAAGGGAGCGCGAA
AGGATCCAGGAGAGGGAACCATCCAACCAGCAGCCCGCCTCCTCCACGGT
CATCGTACTGGAACACAACTCTGGCGGTCAAGCCCGCACCATTGTCCCAC
TGAGTAAACCCTACTACGAACCAGATCCTCCCGGCGAACGCTATATGCGA
TTTGGCCAGCCCTCTTCCAGCATCCTGGAGACTATCCTCACCAGCCAACA
TCGCTTGGAGGCGGCAGCTGCTGCGGCAAATGCCTGCCGACAGGCCAATG
CCGCCACACCACCGCCCACATCGCCCACGGAGATGGCCTACAGCTACAAG
AAATCCCAGCGGTACGGTAATGCCGTGAGTCCGGATAGTAGTTCCAATCT
GGGACAGAATCCCGAGCAGCTTTCCTCGTCGGCAGTGGTGGTCGGCGAAC
AGGAAATGACCAGAGCCACCATGATCAAGGGAGAGTGCTCACCACCACCG
CCTAGCCACCATCATCACAATGTCATCTTCTCGCCCTCGAGACATGCTGC
TTATCTGGGAGCCGGCGAAGCGGGTGGCCACTCACCGAGTCCGGGTTATC
CTGGCTATCCCCACTATGGAGCTGCAGCCACCTCGACCTTCCACTCACCA
CCACATAGTTCCCATTCCCCGTTCGATCGCCAGTCGAATGCATCCAGTGG
TGCGGGTTCGGCCACAAATCTGCATTTATTGCAAACCAGCACCCAAATGC
TGAACCATCCGCTGATGCAGCCCCTCACACCCCTGCAGCGTTTGTCCCCG
CTGAGGATATCCCCACCCAGCAGCCTCAGTCCTGATGGCAACTCGTGTCC
CCGCAGCGGCAGCCCCTTGAGTCCCAATTCCTTGGCCTCCAGAGGCTACC
GATCGTTGCCTTATCCGCTCAAGAAGAAGGATGGCAAGATGCACTACGAG
TGCAATGTGTGCTGCAAGACTTTTGGCCAATTGAGCAACCTCAAGGTGCA
CCTGAGAACCCATTCCGGCGAAAGGCCCTTCAAGTGCAATGTGTGCACGA
AGAGCTTCACCCAGTTGGCGCACCTCCAGAAGCATCATCTGGTGCATACG
GGCGAGAAACCGCATCAGTGCGACATCTGCAAGAAGCGTTTCTCGAGCAC
CTCCAACCTGAAGACCCATTTGAGGCTGCACAGTGGTCAGAAACCATATG
CCTGTGATCTCTGCCCGCAGAAGTTCACACAGTTTGTGCATCTGAAGTTG
CACAAGAGACTGCACACGAACGACAGGCCCTATGTGTGCCAGGGTTGCGA
CAAGAAGTACATCAGTGCATCCGGCTTGAGGACCCACTGGAAGACCACCA
GCTGCAAGCCCAACAATCTGGAGGAGGAGCTGGCCATGGCAGCAGCGGCA
ACATCGGAGTGTTTGGATAAAGACCATCCCGAACCGGACTCCCGAGAAGC
CTACGAGCAACTGACGCAGCACATGCATCCTGCTGTGCATCCGGGATTGA
GGCACCTCTCGAGTGGGGGTCAATCGCCACCGCGCCTGATACCCCTGGGC
AATCACATGGCGCCACAACAGCAGTCGCATCAGCAGCAGCAACAGCAGCA
TCAGCAGCAGGGAGTGCCACCGCCCCACTTACTGATGACCCAGCATTCGG
TGGGTCCGGCACCCATGCTGCTGACCACCGCCAGCCAGTTGCCACCACCG
CCGCCACATCATCAGCAGAACTCGCCCAGCCGTCTGCTGCAACATGGCCA
CGCACATCCGTTGCAGATGCAACAGCAACAGCAGCAGCAACAGCAGCACT
CGCCCAAGGGACTCAAATCCCTGCCGGAATCGGGGGTGTATCTGCATGGA
CAGCATGTGCAGGCCCAGGAGAGCAGACCATCGGTCATTGAGTCCTCCAA
CCAGCCCATGATCATCGAATGCACGTAGAAGCTTTCTAGACCAT
BS11873.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:30:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Blimp-1-RF | 3612 | CG5249-PF | 1..3612 | 17..3628 | 18060 | 100 | Plus |
| Blimp-1-RE | 3612 | CG5249-PE | 1..3612 | 17..3628 | 18060 | 100 | Plus |
| Blimp-1-RD | 3612 | CG5249-PD | 1..3612 | 17..3628 | 18060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:30:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Blimp-1-RF | 7517 | CG5249-RF | 619..4240 | 10..3631 | 18095 | 100 | Plus |
| Blimp-1-RE | 3929 | CG5249-RE | 189..3810 | 10..3631 | 18095 | 100 | Plus |
| Blimp-1-RD | 4192 | CG5249-RD | 452..4073 | 10..3631 | 18095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:30:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5645674..5648237 | 553..3116 | 12820 | 100 | Plus |
| 3L | 28110227 | 3L | 5648302..5648817 | 3116..3631 | 2580 | 100 | Plus |
| 3L | 28110227 | 3L | 5644206..5644632 | 10..436 | 2120 | 99.8 | Plus |
| 3L | 28110227 | 3L | 5644733..5644851 | 435..553 | 595 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:30:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2333..2510 | 30..211 | 224 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2474..2536 | 25..84 | 118 | 69.8 | Plus |
BS11873.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:55 Download gff for
BS11873.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Blimp-1-RA | 626..4237 | 17..3628 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:53 Download gff for
BS11873.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Blimp-1-RA | 626..4237 | 17..3628 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:26:01 Download gff for
BS11873.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Blimp-1-RA | 626..4237 | 17..3628 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:02 Download gff for
BS11873.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Blimp-1-RD | 459..4070 | 17..3628 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:02 Download gff for
BS11873.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5644213..5644632 | 17..436 | 100 | -> | Plus |
| 3L | 5644735..5644851 | 437..553 | 100 | -> | Plus |
| 3L | 5645675..5648237 | 554..3116 | 100 | -> | Plus |
| 3L | 5648303..5648814 | 3117..3628 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:53 Download gff for
BS11873.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5637313..5637732 | 17..436 | 100 | -> | Plus |
| arm_3L | 5637835..5637951 | 437..553 | 100 | -> | Plus |
| arm_3L | 5638775..5641337 | 554..3116 | 100 | -> | Plus |
| arm_3L | 5641403..5641914 | 3117..3628 | 100 | | Plus |
BS11873.pep Sequence
Translation from 16 to 3627
> BS11873.pep
MHGHHNHNHLPQQQPQNPQEQQSGAIMKAANQPHHPAHSHPLNHPHPHQH
AQPHPHPHPHPHHKLSARRARSRSRSRSPTPDGNQDYDVTRMREEDFERL
AVYLVPDVQAERGLPNRADKTLPRSLTLKSSMVYSTPNVKTEGVWSSGVI
PRGTRFGPFEGIPTSNYPNDKNKARYFWRIFKDDDYYYLDGSDRSQSNWM
RYVASAYSLSVMNLVACQHQENIYFYTTRDILPNEELMVWYCKDFASRLG
YDVDPETTIFGACKQAVEAEEEADEEEEEAEGEDGKPRYSMPAPEIPPDV
AVSHITYVMGLHLPVGAGNGPANGSVAGSVSGATPPPPTATPCCRRSSPP
AHVSTTTSTCNAHHPHIQHGRHASVIIGQDRSPMASSDKDTAGSPLSGLD
HQMTPQDGSVRSVRSDEGYHSNECHEDGLTPPEDSSDSESEHNYVLDCSK
KAIAPKETVIAQAQKPSSSPPAVVMANTTTNSMISHSSPTATPICETDKN
EYRKFKVKMPLKYEFKNKTCVKQEPSLKEVDQEMSLPQEEEEDQVMHPEP
DSICPSTTTHLGDEHMLMMERERERERERIQEREPSNQQPASSTVIVLEH
NSGGQARTIVPLSKPYYEPDPPGERYMRFGQPSSSILETILTSQHRLEAA
AAAANACRQANAATPPPTSPTEMAYSYKKSQRYGNAVSPDSSSNLGQNPE
QLSSSAVVVGEQEMTRATMIKGECSPPPPSHHHHNVIFSPSRHAAYLGAG
EAGGHSPSPGYPGYPHYGAAATSTFHSPPHSSHSPFDRQSNASSGAGSAT
NLHLLQTSTQMLNHPLMQPLTPLQRLSPLRISPPSSLSPDGNSCPRSGSP
LSPNSLASRGYRSLPYPLKKKDGKMHYECNVCCKTFGQLSNLKVHLRTHS
GERPFKCNVCTKSFTQLAHLQKHHLVHTGEKPHQCDICKKRFSSTSNLKT
HLRLHSGQKPYACDLCPQKFTQFVHLKLHKRLHTNDRPYVCQGCDKKYIS
ASGLRTHWKTTSCKPNNLEEELAMAAAATSECLDKDHPEPDSREAYEQLT
QHMHPAVHPGLRHLSSGGQSPPRLIPLGNHMAPQQQSHQQQQQQHQQQGV
PPPHLLMTQHSVGPAPMLLTTASQLPPPPPHHQQNSPSRLLQHGHAHPLQ
MQQQQQQQQQHSPKGLKSLPESGVYLHGQHVQAQESRPSVIESSNQPMII
ECT*
BS11873.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:59:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Blimp-1-PF | 1203 | CG5249-PF | 1..1203 | 1..1203 | 6533 | 100 | Plus |
| Blimp-1-PE | 1203 | CG5249-PE | 1..1203 | 1..1203 | 6533 | 100 | Plus |
| Blimp-1-PD | 1203 | CG5249-PD | 1..1203 | 1..1203 | 6533 | 100 | Plus |
| Blimp-1-PA | 1203 | CG5249-PA | 1..1203 | 1..1203 | 6533 | 100 | Plus |
| Blimp-1-PC | 1216 | CG5249-PC | 1..1216 | 1..1203 | 6509 | 98.9 | Plus |
