BS11874.complete Sequence
2210 bp assembled on 2009-12-07
GenBank Submission: KX801639
> BS11874.complete
GAAGTTATCAGTCGACATGACGAAAATTAAATATGAACTTGTTCCAAGTG
AGGAGCAAGAACCAAACGAAAGTAAAAAACCTTTAAATTGGATAGTGAAA
ATATTATTTGTTGTCTTGGCGCTTTTTACCCTGGTCATTTATACCTTGAG
CGGCGCCAATAATCCGCTCAAGAACAATGCAGATCCATTTTCCCCTTGGA
AATCCATGAGACTCCTTGCGGGATCAGGTTGGACCAATAATCCCGGAGAT
CTGTCGAGTCCTTTGAATGTTAAGCATACAACTCGTAGTCTGAGTACAGA
GAAGCAATCTACGGAAGCAATCTATAATAAACTAGCAGATACTGAGAGCA
CCACCGAGGATCAAACTGAGATAACTACCGTAGACCACACGGATGAAGTC
GTAGAAAGTAGCACTTCATCACCAGCTACTGGAGCATCGAAAACAGAGAC
TTTATATGCACTGGAAGGAAATGGAAAGAAATACTTCGTCCATAGCCCGC
AGTGCCAAATGAGCCACCCAAATCCGTTTGCCAATAACATTCAGCACATC
TACAAGAAACATTCCTATATAGTGTGTGATAAAAGTCGCGACATGATCAC
AGTCAACTACAATGTAACTGACAGCACGTACAGGCTGCACAAGAACGAGA
ACTCCACCTGCTGCTTCAAGCAGATCCTTCGAGCAGGAACTTCAGCCAAT
GCGGATCATAAGTACAAGCTGGGTCCTTGCGTAGAATTTCACCAGGACTT
CTTGGTGCCAACAGAAGTGAGTGCCATGATCACCTATTGCCGTCGGCCTC
CATTCGATAAGGTGTCGCAAAAGGATGCCTTCAGTTTTGTGCATCCGCGA
AAGGATCAGATCGAAAATCCCACAACGCCGCATAGAAGAAGGCCCAGCGT
TTTGCTGTGGGGCATTGATTCCATTTCCCGAATGAATCTTGAGCTTACGA
TGCCCCGTATGTACGAGTACTTGAACAATCAACATTGGTTTGAGCTTCAG
GGATACAACAAGATGGGCGATAATACGTTTCCGAATCTGATGGCGGTTCT
CACGGGATTTAACAAGACCTACGCGAACGCACGTTGCCATCCTGAGAAGG
TGCGTGGCCTGGATGCCTGTCCGTTTATTTGGAAGGACTTCAAGGACAAG
GGATACACAACTGCCTTCGCCGAGGACTGGAGCAAGTTCTCCACGTTTGA
CTACTCTAGCAGGGGCTTTTTCAATCCTCCGACCGACGTGTACGGCAGAC
CACTGGTCCTGGCCGTGGAGAAGGAGCTAACGATATTACAACGGGGTCAG
ATGCCCTACTGCTTGGGCCGCAAGCCGGCTTCCGAATACATCTATGACAT
GGGCGTGCAGTTCACCATGGTCAACCGGAACAGCACCTTCTTCGGAATGT
TTTGGACCAACACATTCAGCCACAACGACTTCTCTATGCCCTCCGCCATG
GATGAGAGGATGGTGAAGTACATGCGGACGTTGGACAAGAACGGCATAAT
GGATAACACCATCATCATCTTCTTCAGCGATCATGGATCCAGGTTTGGAC
CATTGAGGAATTTGGACAGCGGTTTCGTGGAAGAACGCTTGCCCTTCATA
TATATCCGTGTGCCGCGTTGGATTCGTGAGAAGTACCCGAAGCTCCTGCG
CAACCTGCAGATGAACAAGAACCGCCTGACGTCGCCATACGATATCCATG
CCACCCTGAGGCACATCCTGGAGCTAGACACTCCCAAGGATAAGCTACCT
CGTCCCGATGGCTGCTCCAGCTGTCACAGCGTTTTCGAGGAGGTGGACTG
GTCGAGGAATTGCTCACAGGCCGGGATCGAGGATCACTGGTGCGCATGCA
ACAGCTTCTCCGACGTGCCCACAACGGATCCCAGCGCCAGGAGCATGTCC
ACCCAGCTGGTGGAGGCCATTAACGAATATGTGGCCAGCAAAAAAGGAAC
GAAACGGTGCAGTCGCTTGAAACTGAACCGAATATCCTCAGTCCAGAGAA
GAGGAAACTCCAATCGGTATCTCATCCAGCTGATGGCCCAGCCGGGTGAC
GCTCTCTTCGAGGCCACCGTGGATTGGGATGCCAGTGCCCAAAGGATTCC
CGCTCAGATGCCCAGCATCAGTCGGTTAGACACGTACGCCGCAAAGTCAA
GATGCTCGTCGGTTAAGGAGACCAAAAAGTACTGCATCTGCTGAAAGCTT
TCTAGACCAT
BS11874.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:12:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15695-RA | 2178 | CG15695-PA | 1..2178 | 17..2194 | 10890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:12:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15695-RA | 2723 | CG15695-RA | 194..2371 | 17..2194 | 10890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:12:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20843446..20844629 | 1011..2194 | 5920 | 100 | Plus |
| 3R | 32079331 | 3R | 20842333..20843034 | 17..718 | 3510 | 100 | Plus |
| 3R | 32079331 | 3R | 20843085..20843379 | 718..1012 | 1475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:12:34 has no hits.
BS11874.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:56 Download gff for
BS11874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15695-RA | 192..2368 | 17..2193 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:08:43 Download gff for
BS11874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15695-RA | 194..2370 | 17..2193 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:22:03 Download gff for
BS11874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15695-RA | 192..2368 | 17..2193 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:22 Download gff for
BS11874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15695-RA | 194..2370 | 17..2193 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:22 Download gff for
BS11874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20842333..20843033 | 17..717 | 100 | -> | Plus |
| 3R | 20843085..20843379 | 718..1012 | 100 | -> | Plus |
| 3R | 20843448..20844628 | 1013..2193 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:08:43 Download gff for
BS11874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16668055..16668755 | 17..717 | 100 | -> | Plus |
| arm_3R | 16668807..16669101 | 718..1012 | 100 | -> | Plus |
| arm_3R | 16669170..16670350 | 1013..2193 | 100 | | Plus |
BS11874.pep Sequence
Translation from 16 to 2193
> BS11874.pep
MTKIKYELVPSEEQEPNESKKPLNWIVKILFVVLALFTLVIYTLSGANNP
LKNNADPFSPWKSMRLLAGSGWTNNPGDLSSPLNVKHTTRSLSTEKQSTE
AIYNKLADTESTTEDQTEITTVDHTDEVVESSTSSPATGASKTETLYALE
GNGKKYFVHSPQCQMSHPNPFANNIQHIYKKHSYIVCDKSRDMITVNYNV
TDSTYRLHKNENSTCCFKQILRAGTSANADHKYKLGPCVEFHQDFLVPTE
VSAMITYCRRPPFDKVSQKDAFSFVHPRKDQIENPTTPHRRRPSVLLWGI
DSISRMNLELTMPRMYEYLNNQHWFELQGYNKMGDNTFPNLMAVLTGFNK
TYANARCHPEKVRGLDACPFIWKDFKDKGYTTAFAEDWSKFSTFDYSSRG
FFNPPTDVYGRPLVLAVEKELTILQRGQMPYCLGRKPASEYIYDMGVQFT
MVNRNSTFFGMFWTNTFSHNDFSMPSAMDERMVKYMRTLDKNGIMDNTII
IFFSDHGSRFGPLRNLDSGFVEERLPFIYIRVPRWIREKYPKLLRNLQMN
KNRLTSPYDIHATLRHILELDTPKDKLPRPDGCSSCHSVFEEVDWSRNCS
QAGIEDHWCACNSFSDVPTTDPSARSMSTQLVEAINEYVASKKGTKRCSR
LKLNRISSVQRRGNSNRYLIQLMAQPGDALFEATVDWDASAQRIPAQMPS
ISRLDTYAAKSRCSSVKETKKYCIC*
BS11874.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:46:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15695-PA | 725 | CG15695-PA | 1..725 | 1..725 | 3895 | 100 | Plus |
| CG9988-PA | 668 | CG9988-PA | 66..661 | 156..725 | 1044 | 37.4 | Plus |
| CG7120-PG | 701 | CG7120-PG | 104..696 | 154..725 | 1042 | 37.2 | Plus |
| CG7120-PF | 701 | CG7120-PF | 104..696 | 154..725 | 1042 | 37.2 | Plus |
| CG7120-PE | 686 | CG7120-PE | 91..681 | 156..725 | 1039 | 37.1 | Plus |
