Clone Sequence Records
BS11875.3prime Sequence
684 bp (684 high quality bases) assembled on 2006-06-16
> BS11875.3prime
ATGGTCTAGAAAGCTTTTAGTAGCCGTTGAATTTGCCCTGCTGCGCGTTG
CTATCATAACCGCCACCGTTGCGACCATTGCCATTGCCGTTTCCGTTGCC
ATTGCCGACCTGCTCGTACCGAATGGTTGGGCGGTATCCATTCTGGTCGG
CCTCGTACTCAACAATCTGTTTGCGTCCATCGGGCAGCAGGACGTAGTAG
CGGCCCACAGCAAGATCACCATCGCGGGACTCCATGTGGCCGAAGTCATT
GCCCGACTCGTAGTCCTGTACGTCGTACTTGAACTCGTACTTGGCCGGTC
CATACTGCTCCTCATCCCGTTGTCCGTAGCCGTTGCCGTTGCCATTACCG
CCGCCATAGCCGCCGTTTCCGTTTCCGTTTCCGCCCTTGAAGATGGCACC
AGTCAGCGCTGGAGCACCATATTGACCCTGGGGAGGAGCGATGGGGGCGC
CATAGCTGTTGCTGGGCGCTCCTCCATTGCCACCGGCCCGCTGGGGTGGC
AAGTAGTTGCTCGACGGCGACTGGTAGCCCTGCGTGGGCGGCAGGTAGTT
GTTGGACGGCGCCTGAGGCGACTGATTGGGGGGCAGGTACTGGTTCTGGG
GAACTGGTGGTTCCGCATGGGTCCAGGCAGCCAGGCACACGAGCAGGGCA
ATGGATGTAAAAGCCTTCATGTCGACTGATAACT
BS11875.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9036-PA | 654 | CG9036-RA | 1..654 | 670..17 | 3270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:43:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr56F-RA | 1259 | CG9036-RA | 113..766 | 670..17 | 3270 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:43:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20288864..20289513 | 17..666 | 3250 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:43:54 has no hits.
BS11875.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:57 Download gff for
BS11875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9036-PA | 1..654 | 17..670 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:27 Download gff for
BS11875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr56F-RA | 107..766 | 17..678 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:48 Download gff for
BS11875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr56F-RA | 107..766 | 17..678 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:48 Download gff for
BS11875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20288864..20289513 | 17..666 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:27 Download gff for
BS11875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16176369..16177018 | 17..666 | 100 | | Plus |
BS11875.5prime Sequence
684 bp (684 high quality bases) assembled on 2006-06-16
> BS11875.5prime
GAAGTTATCAGTCGACATGAAGGCTTTTACATCCATTGCCCTGCTCGTGT
GCCTGGCTGCCTGGACCCATGCGGAACCACCAGTTCCCCAGAACCAGTAC
CTGCCCCCCAATCAGTCGCCTCAGGCGCCGTCCAACAACTACCTGCCGCC
CACGCAGGGCTACCAGTCGCCGTCGAGCAACTACTTGCCACCCCAGCGGG
CCGGTGGCAATGGAGGAGCGCCCAGCAACAGCTATGGCGCCCCCATCGCT
CCTCCCCAGGGTCAATATGGTGCTCCAGCGCTGACTGGTGCCATCTTCAA
GGGCGGAAACGGAAACGGAAACGGCGGCTATGGCGGCGGTAATGGCAACG
GCAACGGCTACGGACAACGGGATGAGGAGCAGTATGGACCGGCCAAGTAC
GAGTTCAAGTACGACGTACAGGACTACGAGTCGGGCAATGACTTCGGCCA
CATGGAGTCCCGCGATGGTGATCTTGCTGTGGGCCGCTACTACGTCCTGC
TGCCCGATGGACGCAAACAGATTGTTGAGTACGAGGCCGACCAGAATGGA
TACCGCCCAACCATTCGGTACGAGCAGGTCGGCAATGGCAACGGAAACGG
CAATGGCAATGGTCGCAACGGTGGCGGTTATGATAGCAACGCGCAGCAGG
GCAAATTCAACGGCTACTAAAAGCTTTCTAGACC
BS11875.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9036-PA | 654 | CG9036-RA | 1..654 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:40:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr56F-RA | 1259 | CG9036-RA | 113..766 | 17..670 | 3270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:40:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20288864..20289513 | 670..21 | 3250 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:40:05 has no hits.
BS11875.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:57 Download gff for
BS11875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9036-PA | 1..654 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:56 Download gff for
BS11875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr56F-RA | 107..766 | 9..670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:46:11 Download gff for
BS11875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr56F-RA | 107..766 | 9..670 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:46:11 Download gff for
BS11875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20288864..20289513 | 21..670 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:56 Download gff for
BS11875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16176369..16177018 | 21..670 | 100 | | Minus |
BS11875.complete Sequence
686 bp assembled on 2006-11-01
GenBank Submission: FJ637009
> BS11875.complete
GAAGTTATCAGTCGACATGAAGGCTTTTACATCCATTGCCCTGCTCGTGT
GCCTGGCTGCCTGGACCCATGCGGAACCACCAGTTCCCCAGAACCAGTAC
CTGCCCCCCAATCAGTCGCCTCAGGCGCCGTCCAACAACTACCTGCCGCC
CACGCAGGGCTACCAGTCGCCGTCGAGCAACTACTTGCCACCCCAGCGGG
CCGGTGGCAATGGAGGAGCGCCCAGCAACAGCTATGGCGCCCCCATCGCT
CCTCCCCAGGGTCAATATGGTGCTCCAGCGCTGACTGGTGCCATCTTCAA
GGGCGGAAACGGAAACGGAAACGGCGGCTATGGCGGCGGTAATGGCAACG
GCAACGGCTACGGACAACGGGATGAGGAGCAGTATGGACCGGCCAAGTAC
GAGTTCAAGTACGACGTACAGGACTACGAGTCGGGCAATGACTTCGGCCA
CATGGAGTCCCGCGATGGTGATCTTGCTGTGGGCCGCTACTACGTCCTGC
TGCCCGATGGACGCAAACAGATTGTTGAGTACGAGGCCGACCAGAATGGA
TACCGCCCAACCATTCGGTACGAGCAGGTCGGCAATGGCAACGGAAACGG
CAATGGCAATGGTCGCAACGGTGGCGGTTATGATAGCAACGCGCAGCAGG
GCAAATTCAACGGCTACTAAAAGCTTTCTAGACCAT
BS11875.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:38:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr56F-RA | 654 | CG9036-PA | 1..654 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:38:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr56F-RA | 1259 | CG9036-RA | 113..766 | 17..670 | 3270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:38:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20288864..20289513 | 670..21 | 3250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:38:40 has no hits.
BS11875.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:31 Download gff for
BS11875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr56F-RA | 1..654 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:37 Download gff for
BS11875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr56F-RA | 105..764 | 9..670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:28 Download gff for
BS11875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr56F-RA | 113..764 | 17..668 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:31 Download gff for
BS11875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr56F-RA | 105..764 | 9..670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:34 Download gff for
BS11875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr56F-RA | 113..764 | 17..668 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:34 Download gff for
BS11875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20288866..20289513 | 17..668 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:28 Download gff for
BS11875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16176371..16177018 | 17..668 | 99 | | Minus |
BS11875.pep Sequence
Translation from 16 to 669
> BS11875.pep
MKAFTSIALLVCLAAWTHAEPPVPQNQYLPPNQSPQAPSNNYLPPTQGYQ
SPSSNYLPPQRAGGNGGAPSNSYGAPIAPPQGQYGAPALTGAIFKGGNGN
GNGGYGGGNGNGNGYGQRDEEQYGPAKYEFKYDVQDYESGNDFGHMESRD
GDLAVGRYYVLLPDGRKQIVEYEADQNGYRPTIRYEQVGNGNGNGNGNGR
NGGGYDSNAQQGKFNGY*
BS11875.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr56F-PA | 217 | CG9036-PA | 1..217 | 1..217 | 1206 | 100 | Plus |
| resilin-PA | 620 | CG15920-PA | 248..459 | 24..217 | 397 | 44.7 | Plus |
| resilin-PB | 575 | CG15920-PB | 214..414 | 24..217 | 213 | 35.1 | Plus |
| resilin-PA | 620 | CG15920-PA | 7..264 | 7..216 | 208 | 32.7 | Plus |
| resilin-PB | 575 | CG15920-PB | 7..264 | 7..216 | 208 | 32.7 | Plus |
| Cpr50Cb-PA | 178 | CG6305-PA | 5..175 | 2..203 | 202 | 30.8 | Plus |
| Cpr65Az-PA | 239 | CG12330-PA | 31..187 | 14..181 | 183 | 28.8 | Plus |
| resilin-PA | 620 | CG15920-PA | 183..345 | 38..214 | 159 | 31.6 | Plus |
