Clone BS11876 Report

Search the DGRC for BS11876

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:118
Well:76
Vector:pDNR-Dual
Associated Gene/Transcriptbwa-RA
Protein status:BS11876.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11876.3prime Sequence

818 bp (690 high quality bases) assembled on 2006-06-16

> BS11876.3prime
ATGGTCTAGAAAGCTTTTAGATGGTGTTGCGCAGAGCCTTACCTGGATTC
CGGATCGAAATGAAGGGTATCCCGAACTCGAACTCGTTCTTTGGCCAGTA
CTTCAGCAGCGGCTGTCGCTGGGGCAGCTCCGATTCCACGTAGAAGTAGG
CGAAAAGCACCAGCACCGTGTAGGCGGCTATAAAAATGAATATGTGCCAG
AAGCCGTGCAGGTATGGAAAATTGATCGAGGACCAGGCCTCGCAGAAGAT
CCGGTCATTGATCCAGCAGAACACCGCAACAGCCCAGACGGTCGTCGATC
GGATGCCCAGGCGGTAGACCCTCTGGTCACTAACTCTCTGCAGCTCTGTG
TAGAGCATTACCATGGTCGGCACACTCATGAACATGAGAACAAAGGCGTT
AACAATGGGCTTCCACCACGACAAGCCCGTCGCAGCAATCGCCGACAAGA
GCATGAGCCAACTGAAGGTTTTGCGATCGTTTTTCACGAACTTGGGATAG
TATCGCTTCGGATAGAAGAGCGAAAAGGCCGCCATGAAGACCCAGAGTAT
GGCCAGTTCGTCCAGCAGCTGGCCAATCAGACTCAAAGTGGCATGGAAGT
ACATCGAACTCAGGCCAACCACGATGAGCAGCACCCAGATGACGTGGATT
CCGGGCGTCACAAAGCGTCCGTACTCCTTGAAGAGCATTATAAGGACGGG
CGGCAGTAGGATGAACAGGAAGTTGCTAAACGTGTTCACGAACTCGGCGA
TGTTGGACGAAATCAAGTAGTTGCCTTCGCACCAGTCGACGGGCGAGCTT
CGGGGTCTTAGGTGCTCC

BS11876.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG13969-PA 852 bwa-RA 51..852 818..17 3985 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:17:47
Subject Length Description Subject Range Query Range Score Percent Strand
bwa-RA 2269 CG13969-RA 421..1222 818..17 3995 99.9 Minus
bwa-RB 1538 CG13969-RB 421..1196 818..43 3865 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:17:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20072352..20072672 337..17 1605 100 Minus
2L 23513712 2L 20069047..20069304 731..474 1290 100 Minus
2L 23513712 2L 20069376..20069514 474..336 695 100 Minus
2L 23513712 2L 20066811..20066898 818..731 425 98.9 Minus
Blast to na_te.dros performed on 2015-02-10 21:17:45 has no hits.

BS11876.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:57 Download gff for BS11876.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13969-PA 51..852 17..818 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:09 Download gff for BS11876.3prime
Subject Subject Range Query Range Percent Splice Strand
bwa-RA 421..1222 17..818 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:17 Download gff for BS11876.3prime
Subject Subject Range Query Range Percent Splice Strand
bwa-RA 421..1222 17..818 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:17 Download gff for BS11876.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20072354..20072672 17..335 100   Minus
2L 20066811..20066898 731..818 98 -> Minus
2L 20069048..20069304 474..730 100 -> Minus
2L 20069377..20069514 336..473 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:09 Download gff for BS11876.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20066811..20066898 731..818 98 -> Minus
arm_2L 20069048..20069304 474..730 100 -> Minus
arm_2L 20069377..20069514 336..473 100 -> Minus
arm_2L 20072354..20072672 17..335 100   Minus

BS11876.5prime Sequence

882 bp (743 high quality bases) assembled on 2006-06-16

> BS11876.5prime
GAAGTTATCAGTCGACATGGGCGGGATGGGGGGCGGCGGGCTGCTGGACA
TCTACGCCATGGCCTGGGAGCACCTAAGACCCGGAAGCTCGCCCGTCGAC
TGGTGCGAAGGCAACTACTTGATTTCGTCCAACATCGCCGAGTTCGTGAA
CACGTTTAGCAACTTCCTGTTCATCCTACTGCCGCCCGTCCTTATAATGC
TCTTCAAGGAGTACGGACGCTTTGTGACGCCCGGAATCCACGTCATCTGG
GTGCTGCTCATCGTGGTTGGCCTGAGTTCGATGTACTTCCATGCCACTTT
GAGTCTGATTGGCCAGCTGCTGGACGAACTGGCCATACTCTGGGTCTTCA
TGGCGGCCTTTTCGCTCTTCTATCCGAAGCGATACTATCCCAAGTTCGTG
AAAAACGATCGCAAAACCTTCAGTTGGCTCATGCTCTTGTCGGCGATTGC
TGCGACGGGCTTGTCGTGGTGGAAGCCCATTGTTAACGCCTTTGTTCTCA
TGTTCATGAGTGTGCCGACCATGGTAATGCTCTACACAGAGCTGCAGAGA
GTTAGTGACCAGAGGGTCTACCGCCTGGGCATCCGATCGACGACCGTCTG
GGCTGTTGCGGTGTTCTGCTGGATCAATGACCGGATCTTCTGCGAGGCCT
GGTCCTCGATCAATTTTCCATACCTGCACGGCTTCTGGCACATATTCATT
TTTATAGCCGCCTACACGGTGCTGGTGCTTTTCGCCTACTTCTACGTGGA
ATCGGAGCTGCCCCAGCGACAGCCGCTGCTGAAGTACTGGCCAAAGAACG
AGTTCGAGTTCGGGATACCCTTCATTTCGATCCGGAATCCAGGTAAGGCT
CTGCGCAACACCATCTAAAAGCTTTCTAGACC

BS11876.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG13969-PA 852 bwa-RA 1..852 17..868 4260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:50:17
Subject Length Description Subject Range Query Range Score Percent Strand
bwa-RA 2269 CG13969-RA 371..1222 17..868 4260 100 Plus
bwa-RB 1538 CG13969-RB 371..1196 17..842 4130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:50:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20072352..20072672 548..868 1605 100 Plus
2L 23513712 2L 20069047..20069304 154..411 1290 100 Plus
2L 23513712 2L 20069376..20069514 411..549 695 100 Plus
2L 23513712 2L 20066761..20066898 17..154 690 100 Plus
Blast to na_te.dros performed on 2015-02-02 17:50:14 has no hits.

BS11876.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:58 Download gff for BS11876.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13969-PA 1..852 17..868 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:00 Download gff for BS11876.5prime
Subject Subject Range Query Range Percent Splice Strand
bwa-RA 369..1222 14..868 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:39 Download gff for BS11876.5prime
Subject Subject Range Query Range Percent Splice Strand
bwa-RA 369..1222 14..868 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:39 Download gff for BS11876.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20066759..20066898 14..154 99 -> Plus
2L 20069048..20069304 155..411 100 -> Plus
2L 20069377..20069514 412..549 100 -> Plus
2L 20072354..20072672 550..868 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:00 Download gff for BS11876.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20066759..20066898 14..154 99 -> Plus
arm_2L 20069048..20069304 155..411 100 -> Plus
arm_2L 20069377..20069514 412..549 100 -> Plus
arm_2L 20072354..20072672 550..868 100   Plus

BS11876.complete Sequence

884 bp assembled on 2006-11-01

> BS11876.complete
GAAGTTATCAGTCGACATGGGCGGGATGGGGGGCGGCGGGCTGCTGGACA
TCTACGCCATGGCCTGGGAGCACCTAAGACCCGGAAGCTCGCCCGTCGAC
TGGTGCGAAGGCAACTACTTGATTTCGTCCAACATCGCCGAGTTCGTGAA
CACGTTTAGCAACTTCCTGTTCATCCTACTGCCGCCCGTCCTTATAATGC
TCTTCAAGGAGTACGGACGCTTTGTGACGCCCGGAATCCACGTCATCTGG
GTGCTGCTCATCGTGGTTGGCCTGAGTTCGATGTACTTCCATGCCACTTT
GAGTCTGATTGGCCAGCTGCTGGACGAACTGGCCATACTCTGGGTCTTCA
TGGCGGCCTTTTCGCTCTTCTATCCGAAGCGATACTATCCCAAGTTCGTG
AAAAACGATCGCAAAACCTTCAGTTGGCTCATGCTCTTGTCGGCGATTGC
TGCGACGGGCTTGTCGTGGTGGAAGCCCATTGTTAACGCCTTTGTTCTCA
TGTTCATGAGTGTGCCGACCATGGTAATGCTCTACACAGAGCTGCAGAGA
GTTAGTGACCAGAGGGTCTACCGCCTGGGCATCCGATCGACGACCGTCTG
GGCTGTTGCGGTGTTCTGCTGGATCAATGACCGGATCTTCTGCGAGGCCT
GGTCCTCGATCAATTTTCCATACCTGCACGGCTTCTGGCACATATTCATT
TTTATAGCCGCCTACACGGTGCTGGTGCTTTTCGCCTACTTCTACGTGGA
ATCGGAGCTGCCCCAGCGACAGCCGCTGCTGAAGTACTGGCCAAAGAACG
AGTTCGAGTTCGGGATACCCTTCATTTCGATCCGGAATCCAGGTAAGGCT
CTGCGCAACACCATCTAAAAGCTTTCTAGACCAT

BS11876.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:48:33
Subject Length Description Subject Range Query Range Score Percent Strand
bwa-RA 852 CG13969-PA 1..852 17..868 4260 100 Plus
bwa-RB 903 CG13969-PB 1..826 17..842 4130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:48:34
Subject Length Description Subject Range Query Range Score Percent Strand
bwa-RA 2269 CG13969-RA 371..1222 17..868 4260 100 Plus
bwa-RB 1538 CG13969-RB 371..1196 17..842 4130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:48:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20072352..20072672 548..868 1605 100 Plus
2L 23513712 2L 20069047..20069304 154..411 1290 100 Plus
2L 23513712 2L 20069376..20069514 411..549 695 100 Plus
2L 23513712 2L 20066761..20066898 17..154 690 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:48:32 has no hits.

BS11876.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:57 Download gff for BS11876.complete
Subject Subject Range Query Range Percent Splice Strand
bwa-RA 1..852 17..868 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:03 Download gff for BS11876.complete
Subject Subject Range Query Range Percent Splice Strand
bwa-RA 390..1243 14..868 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:44 Download gff for BS11876.complete
Subject Subject Range Query Range Percent Splice Strand
bwa-RA 371..1220 17..866 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:58 Download gff for BS11876.complete
Subject Subject Range Query Range Percent Splice Strand
bwa-RA 390..1243 14..868 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:21 Download gff for BS11876.complete
Subject Subject Range Query Range Percent Splice Strand
bwa-RA 371..1220 17..866 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:21 Download gff for BS11876.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20066761..20066898 17..154 100 -> Plus
2L 20069048..20069304 155..411 100 -> Plus
2L 20069377..20069514 412..549 100 -> Plus
2L 20072354..20072670 550..866 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:44 Download gff for BS11876.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20069377..20069514 412..549 100 -> Plus
arm_2L 20066761..20066898 17..154 100 -> Plus
arm_2L 20069048..20069304 155..411 100 -> Plus
arm_2L 20072354..20072670 550..866 100   Plus

BS11876.pep Sequence

Translation from 16 to 867

> BS11876.pep
MGGMGGGGLLDIYAMAWEHLRPGSSPVDWCEGNYLISSNIAEFVNTFSNF
LFILLPPVLIMLFKEYGRFVTPGIHVIWVLLIVVGLSSMYFHATLSLIGQ
LLDELAILWVFMAAFSLFYPKRYYPKFVKNDRKTFSWLMLLSAIAATGLS
WWKPIVNAFVLMFMSVPTMVMLYTELQRVSDQRVYRLGIRSTTVWAVAVF
CWINDRIFCEAWSSINFPYLHGFWHIFIFIAAYTVLVLFAYFYVESELPQ
RQPLLKYWPKNEFEFGIPFISIRNPGKALRNTI*

BS11876.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:06:18
Subject Length Description Subject Range Query Range Score Percent Strand
bwa-PA 283 CG13969-PA 1..283 1..283 1515 100 Plus
bwa-PB 300 CG13969-PB 1..275 1..275 1476 100 Plus