Clone Sequence Records
BS11876.3prime Sequence
818 bp (690 high quality bases) assembled on 2006-06-16
> BS11876.3prime
ATGGTCTAGAAAGCTTTTAGATGGTGTTGCGCAGAGCCTTACCTGGATTC
CGGATCGAAATGAAGGGTATCCCGAACTCGAACTCGTTCTTTGGCCAGTA
CTTCAGCAGCGGCTGTCGCTGGGGCAGCTCCGATTCCACGTAGAAGTAGG
CGAAAAGCACCAGCACCGTGTAGGCGGCTATAAAAATGAATATGTGCCAG
AAGCCGTGCAGGTATGGAAAATTGATCGAGGACCAGGCCTCGCAGAAGAT
CCGGTCATTGATCCAGCAGAACACCGCAACAGCCCAGACGGTCGTCGATC
GGATGCCCAGGCGGTAGACCCTCTGGTCACTAACTCTCTGCAGCTCTGTG
TAGAGCATTACCATGGTCGGCACACTCATGAACATGAGAACAAAGGCGTT
AACAATGGGCTTCCACCACGACAAGCCCGTCGCAGCAATCGCCGACAAGA
GCATGAGCCAACTGAAGGTTTTGCGATCGTTTTTCACGAACTTGGGATAG
TATCGCTTCGGATAGAAGAGCGAAAAGGCCGCCATGAAGACCCAGAGTAT
GGCCAGTTCGTCCAGCAGCTGGCCAATCAGACTCAAAGTGGCATGGAAGT
ACATCGAACTCAGGCCAACCACGATGAGCAGCACCCAGATGACGTGGATT
CCGGGCGTCACAAAGCGTCCGTACTCCTTGAAGAGCATTATAAGGACGGG
CGGCAGTAGGATGAACAGGAAGTTGCTAAACGTGTTCACGAACTCGGCGA
TGTTGGACGAAATCAAGTAGTTGCCTTCGCACCAGTCGACGGGCGAGCTT
CGGGGTCTTAGGTGCTCC
BS11876.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13969-PA | 852 | bwa-RA | 51..852 | 818..17 | 3985 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:17:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bwa-RA | 2269 | CG13969-RA | 421..1222 | 818..17 | 3995 | 99.9 | Minus |
bwa-RB | 1538 | CG13969-RB | 421..1196 | 818..43 | 3865 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:17:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20072352..20072672 | 337..17 | 1605 | 100 | Minus |
2L | 23513712 | 2L | 20069047..20069304 | 731..474 | 1290 | 100 | Minus |
2L | 23513712 | 2L | 20069376..20069514 | 474..336 | 695 | 100 | Minus |
2L | 23513712 | 2L | 20066811..20066898 | 818..731 | 425 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:17:45 has no hits.
BS11876.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:57 Download gff for
BS11876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13969-PA | 51..852 | 17..818 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:09 Download gff for
BS11876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bwa-RA | 421..1222 | 17..818 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:17 Download gff for
BS11876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bwa-RA | 421..1222 | 17..818 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:17 Download gff for
BS11876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20072354..20072672 | 17..335 | 100 | | Minus |
2L | 20066811..20066898 | 731..818 | 98 | -> | Minus |
2L | 20069048..20069304 | 474..730 | 100 | -> | Minus |
2L | 20069377..20069514 | 336..473 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:09 Download gff for
BS11876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20066811..20066898 | 731..818 | 98 | -> | Minus |
arm_2L | 20069048..20069304 | 474..730 | 100 | -> | Minus |
arm_2L | 20069377..20069514 | 336..473 | 100 | -> | Minus |
arm_2L | 20072354..20072672 | 17..335 | 100 | | Minus |
BS11876.5prime Sequence
882 bp (743 high quality bases) assembled on 2006-06-16
> BS11876.5prime
GAAGTTATCAGTCGACATGGGCGGGATGGGGGGCGGCGGGCTGCTGGACA
TCTACGCCATGGCCTGGGAGCACCTAAGACCCGGAAGCTCGCCCGTCGAC
TGGTGCGAAGGCAACTACTTGATTTCGTCCAACATCGCCGAGTTCGTGAA
CACGTTTAGCAACTTCCTGTTCATCCTACTGCCGCCCGTCCTTATAATGC
TCTTCAAGGAGTACGGACGCTTTGTGACGCCCGGAATCCACGTCATCTGG
GTGCTGCTCATCGTGGTTGGCCTGAGTTCGATGTACTTCCATGCCACTTT
GAGTCTGATTGGCCAGCTGCTGGACGAACTGGCCATACTCTGGGTCTTCA
TGGCGGCCTTTTCGCTCTTCTATCCGAAGCGATACTATCCCAAGTTCGTG
AAAAACGATCGCAAAACCTTCAGTTGGCTCATGCTCTTGTCGGCGATTGC
TGCGACGGGCTTGTCGTGGTGGAAGCCCATTGTTAACGCCTTTGTTCTCA
TGTTCATGAGTGTGCCGACCATGGTAATGCTCTACACAGAGCTGCAGAGA
GTTAGTGACCAGAGGGTCTACCGCCTGGGCATCCGATCGACGACCGTCTG
GGCTGTTGCGGTGTTCTGCTGGATCAATGACCGGATCTTCTGCGAGGCCT
GGTCCTCGATCAATTTTCCATACCTGCACGGCTTCTGGCACATATTCATT
TTTATAGCCGCCTACACGGTGCTGGTGCTTTTCGCCTACTTCTACGTGGA
ATCGGAGCTGCCCCAGCGACAGCCGCTGCTGAAGTACTGGCCAAAGAACG
AGTTCGAGTTCGGGATACCCTTCATTTCGATCCGGAATCCAGGTAAGGCT
CTGCGCAACACCATCTAAAAGCTTTCTAGACC
BS11876.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13969-PA | 852 | bwa-RA | 1..852 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:50:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bwa-RA | 2269 | CG13969-RA | 371..1222 | 17..868 | 4260 | 100 | Plus |
bwa-RB | 1538 | CG13969-RB | 371..1196 | 17..842 | 4130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:50:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20072352..20072672 | 548..868 | 1605 | 100 | Plus |
2L | 23513712 | 2L | 20069047..20069304 | 154..411 | 1290 | 100 | Plus |
2L | 23513712 | 2L | 20069376..20069514 | 411..549 | 695 | 100 | Plus |
2L | 23513712 | 2L | 20066761..20066898 | 17..154 | 690 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:50:14 has no hits.
BS11876.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:58 Download gff for
BS11876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13969-PA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:00 Download gff for
BS11876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bwa-RA | 369..1222 | 14..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:39 Download gff for
BS11876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bwa-RA | 369..1222 | 14..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:39 Download gff for
BS11876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20066759..20066898 | 14..154 | 99 | -> | Plus |
2L | 20069048..20069304 | 155..411 | 100 | -> | Plus |
2L | 20069377..20069514 | 412..549 | 100 | -> | Plus |
2L | 20072354..20072672 | 550..868 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:00 Download gff for
BS11876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20066759..20066898 | 14..154 | 99 | -> | Plus |
arm_2L | 20069048..20069304 | 155..411 | 100 | -> | Plus |
arm_2L | 20069377..20069514 | 412..549 | 100 | -> | Plus |
arm_2L | 20072354..20072672 | 550..868 | 100 | | Plus |
BS11876.complete Sequence
884 bp assembled on 2006-11-01
> BS11876.complete
GAAGTTATCAGTCGACATGGGCGGGATGGGGGGCGGCGGGCTGCTGGACA
TCTACGCCATGGCCTGGGAGCACCTAAGACCCGGAAGCTCGCCCGTCGAC
TGGTGCGAAGGCAACTACTTGATTTCGTCCAACATCGCCGAGTTCGTGAA
CACGTTTAGCAACTTCCTGTTCATCCTACTGCCGCCCGTCCTTATAATGC
TCTTCAAGGAGTACGGACGCTTTGTGACGCCCGGAATCCACGTCATCTGG
GTGCTGCTCATCGTGGTTGGCCTGAGTTCGATGTACTTCCATGCCACTTT
GAGTCTGATTGGCCAGCTGCTGGACGAACTGGCCATACTCTGGGTCTTCA
TGGCGGCCTTTTCGCTCTTCTATCCGAAGCGATACTATCCCAAGTTCGTG
AAAAACGATCGCAAAACCTTCAGTTGGCTCATGCTCTTGTCGGCGATTGC
TGCGACGGGCTTGTCGTGGTGGAAGCCCATTGTTAACGCCTTTGTTCTCA
TGTTCATGAGTGTGCCGACCATGGTAATGCTCTACACAGAGCTGCAGAGA
GTTAGTGACCAGAGGGTCTACCGCCTGGGCATCCGATCGACGACCGTCTG
GGCTGTTGCGGTGTTCTGCTGGATCAATGACCGGATCTTCTGCGAGGCCT
GGTCCTCGATCAATTTTCCATACCTGCACGGCTTCTGGCACATATTCATT
TTTATAGCCGCCTACACGGTGCTGGTGCTTTTCGCCTACTTCTACGTGGA
ATCGGAGCTGCCCCAGCGACAGCCGCTGCTGAAGTACTGGCCAAAGAACG
AGTTCGAGTTCGGGATACCCTTCATTTCGATCCGGAATCCAGGTAAGGCT
CTGCGCAACACCATCTAAAAGCTTTCTAGACCAT
BS11876.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:48:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bwa-RA | 852 | CG13969-PA | 1..852 | 17..868 | 4260 | 100 | Plus |
bwa-RB | 903 | CG13969-PB | 1..826 | 17..842 | 4130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:48:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bwa-RA | 2269 | CG13969-RA | 371..1222 | 17..868 | 4260 | 100 | Plus |
bwa-RB | 1538 | CG13969-RB | 371..1196 | 17..842 | 4130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:48:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20072352..20072672 | 548..868 | 1605 | 100 | Plus |
2L | 23513712 | 2L | 20069047..20069304 | 154..411 | 1290 | 100 | Plus |
2L | 23513712 | 2L | 20069376..20069514 | 411..549 | 695 | 100 | Plus |
2L | 23513712 | 2L | 20066761..20066898 | 17..154 | 690 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:48:32 has no hits.
BS11876.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:57 Download gff for
BS11876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bwa-RA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:03 Download gff for
BS11876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bwa-RA | 390..1243 | 14..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:44 Download gff for
BS11876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bwa-RA | 371..1220 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:58 Download gff for
BS11876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bwa-RA | 390..1243 | 14..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:21 Download gff for
BS11876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bwa-RA | 371..1220 | 17..866 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:21 Download gff for
BS11876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20066761..20066898 | 17..154 | 100 | -> | Plus |
2L | 20069048..20069304 | 155..411 | 100 | -> | Plus |
2L | 20069377..20069514 | 412..549 | 100 | -> | Plus |
2L | 20072354..20072670 | 550..866 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:44 Download gff for
BS11876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20069377..20069514 | 412..549 | 100 | -> | Plus |
arm_2L | 20066761..20066898 | 17..154 | 100 | -> | Plus |
arm_2L | 20069048..20069304 | 155..411 | 100 | -> | Plus |
arm_2L | 20072354..20072670 | 550..866 | 100 | | Plus |
BS11876.pep Sequence
Translation from 16 to 867
> BS11876.pep
MGGMGGGGLLDIYAMAWEHLRPGSSPVDWCEGNYLISSNIAEFVNTFSNF
LFILLPPVLIMLFKEYGRFVTPGIHVIWVLLIVVGLSSMYFHATLSLIGQ
LLDELAILWVFMAAFSLFYPKRYYPKFVKNDRKTFSWLMLLSAIAATGLS
WWKPIVNAFVLMFMSVPTMVMLYTELQRVSDQRVYRLGIRSTTVWAVAVF
CWINDRIFCEAWSSINFPYLHGFWHIFIFIAAYTVLVLFAYFYVESELPQ
RQPLLKYWPKNEFEFGIPFISIRNPGKALRNTI*
BS11876.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:06:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bwa-PA | 283 | CG13969-PA | 1..283 | 1..283 | 1515 | 100 | Plus |
bwa-PB | 300 | CG13969-PB | 1..275 | 1..275 | 1476 | 100 | Plus |