Clone Sequence Records
BS11878.3prime Sequence
678 bp (678 high quality bases) assembled on 2006-06-16
> BS11878.3prime
ATGGTCTAGAAAGCTTTCACTGAGAAAACAGAGAGTTACTGTTCGGACCC
GAACTGGAGCCTGCCATGGATGCACTTAGCATGGAGGTGTCCCTTTGAGA
CGCAGTGGCCGTGCGCTGGTACCGTGCTATGTGGTCCAGGGAATAGGGCA
GAATGGGTCTCACGCTGTGGATCTCCAGAAGCGTGAGGTTGTCTAGCTTT
GCATATGTGCCCTCTCCCTTGATAAAGGCGTCGATCGAAGTGCGCAGCTT
GGACTCGCGTATGTCGAAGATGTCCTTGATCACAGTGCGCAGCTCCTCGC
AACGCGGAACGTCATCCGGAGCCGTGCTCATGACCAACTGGGCCACTACC
ATGTAATGCTCACAGGGCATTTTGGTAAAGAACTTTGAGCGCTTTTCCTC
CTCCTTGATTTCCTCCAATATATCCATGTCCATCCATTCTGGAGGTACAA
TTCGGCACTTTTGTTGCTTGCGCAGATGCGTGGCCATCCACAGGGGCACG
AAGACGGGAAAACCGGCTCGGAAAGGGCCCACAGGTCCGTATATCAGGTG
CAGAGGCTCGTTGCTGAAGTTCGGTATTATGCTGATCATGCATTTTTCGC
CAATAAATTCAATAATTGAAGGATCCATAATTGCTATAAACAAACAAAAC
AAATGCGGGAACATGTCGACTGATAACT
BS11878.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18013-PA | 648 | CG18013-RA | 1..648 | 664..17 | 3240 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:40:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Psf2-RB | 831 | CG18013-RB | 27..674 | 664..17 | 3240 | 100 | Minus |
| Psf2-RC | 811 | CG18013-RC | 37..654 | 634..17 | 3090 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:40:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4386339..4386705 | 17..383 | 1835 | 100 | Plus |
| 2L | 23513712 | 2L | 4386762..4387044 | 382..664 | 1415 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:40:18 has no hits.
BS11878.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:58 Download gff for
BS11878.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18013-PA | 1..648 | 17..664 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:01 Download gff for
BS11878.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf2-RB | 24..676 | 11..668 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:47:02 Download gff for
BS11878.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf2-RB | 24..676 | 11..668 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:47:02 Download gff for
BS11878.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4386334..4386705 | 11..383 | 98 | <- | Plus |
| 2L | 4386764..4387047 | 384..668 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:01 Download gff for
BS11878.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4386334..4386705 | 11..383 | 98 | <- | Plus |
| arm_2L | 4386764..4387047 | 384..668 | 99 | | Plus |
BS11878.5prime Sequence
678 bp (678 high quality bases) assembled on 2006-06-16
> BS11878.5prime
GAAGTTATCAGTCGACATGTTCCCGCATTTGTTTTGTTTGTTTATAGCAA
TTATGGATCCTTCAATTATTGAATTTATTGGCGAAAAATGCATGATCAGC
ATAATACCGAACTTCAGCAACGAGCCTCTGCACCTGATATACGGACCTGT
GGGCCCTTTCCGAGCCGGTTTTCCCGTCTTCGTGCCCCTGTGGATGGCCA
CGCATCTGCGCAAGCAACAAAAGTGCCGAATTGTACCTCCAGAATGGATG
GACATGGATATATTGGAGGAAATCAAGGAGGAGGAAAAGCGCTCAAAGTT
CTTTACCAAAATGCCCTGTGAGCATTACATGGTAGTGGCCCAGTTGGTCA
TGAGCACGGCTCCGGATGACGTTCCGCGTTGCGAGGAGCTGCGCACTGTG
ATCAAGGACATCTTCGACATACGCGAGTCCAAGCTGCGCACTTCGATCGA
CGCCTTTATCAAGGGAGAGGGCACATATGCAAAGCTAGACAACCTCACGC
TTCTGGAGATCCACAGCGTGAGACCCATTCTGCCCTATTCCCTGGACCAC
ATAGCACGGTACCAGCGCACGGCCACTGCGTCTCAAAGGGACACCTCCAT
GCTAAGTGCATCCATGGCAGGCTCCAGTTCGGGTCCGAACAGTAACTCTC
TGTTTTCTCAGTGAAAGCTTTCTAGACC
BS11878.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18013-PA | 648 | CG18013-RA | 1..648 | 17..664 | 3240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:06:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Psf2-RB | 831 | CG18013-RB | 27..674 | 17..664 | 3240 | 100 | Plus |
| Psf2-RC | 811 | CG18013-RC | 37..654 | 47..664 | 3090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:06:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4386339..4386705 | 664..298 | 1835 | 100 | Minus |
| 2L | 23513712 | 2L | 4386762..4387044 | 299..17 | 1415 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:06:51 has no hits.
BS11878.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:59 Download gff for
BS11878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18013-PA | 1..648 | 17..664 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:11 Download gff for
BS11878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf2-RB | 24..676 | 13..670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:52:00 Download gff for
BS11878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf2-RB | 24..676 | 13..670 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:52:00 Download gff for
BS11878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4386334..4386705 | 298..670 | 98 | <- | Minus |
| 2L | 4386764..4387047 | 13..297 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:11 Download gff for
BS11878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4386334..4386705 | 298..670 | 98 | <- | Minus |
| arm_2L | 4386764..4387047 | 13..297 | 99 | | Minus |
BS11878.complete Sequence
680 bp assembled on 2006-11-01
GenBank Submission: FJ637010
> BS11878.complete
GAAGTTATCAGTCGACATGTTCCCGCATTTGTTTTGTTTGTTTATAGCAA
TTATGGATCCTTCAATTATTGAATTTATTGGCGAAAAATGCATGATCAGC
ATAATACCGAACTTCAGCAACGAGCCTCTGCACCTGATATACGGACCTGT
GGGCCCTTTCCGAGCCGGTTTTCCCGTCTTCGTGCCCCTGTGGATGGCCA
CGCATCTGCGCAAGCAACAAAAGTGCCGAATTGTACCTCCAGAATGGATG
GACATGGATATATTGGAGGAAATCAAGGAGGAGGAAAAGCGCTCAAAGTT
CTTTACCAAAATGCCCTGTGAGCATTACATGGTAGTGGCCCAGTTGGTCA
TGAGCACGGCTCCGGATGACGTTCCGCGTTGCGAGGAGCTGCGCACTGTG
ATCAAGGACATCTTCGACATACGCGAGTCCAAGCTGCGCACTTCGATCGA
CGCCTTTATCAAGGGAGAGGGCACATATGCAAAGCTAGACAACCTCACGC
TTCTGGAGATCCACAGCGTGAGACCCATTCTGCCCTATTCCCTGGACCAC
ATAGCACGGTACCAGCGCACGGCCACTGCGTCTCAAAGGGACACCTCCAT
GCTAAGTGCATCCATGGCAGGCTCCAGTTCGGGTCCGAACAGTAACTCTC
TGTTTTCTCAGTGAAAGCTTTCTAGACCAT
BS11878.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:05:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Psf2-RC | 612 | CG18013-PC | 1..612 | 53..664 | 3060 | 100 | Plus |
| Psf2-RB | 612 | CG18013-PB | 1..612 | 53..664 | 3060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Psf2-RB | 831 | CG18013-RB | 27..674 | 17..664 | 3240 | 100 | Plus |
| Psf2-RC | 811 | CG18013-RC | 37..654 | 47..664 | 3090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4386339..4386705 | 664..298 | 1835 | 100 | Minus |
| 2L | 23513712 | 2L | 4386762..4387044 | 299..17 | 1415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:05:39 has no hits.
BS11878.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:30 Download gff for
BS11878.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf2-RA | 1..648 | 17..664 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:47 Download gff for
BS11878.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf2-RA | 3..652 | 17..670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:26 Download gff for
BS11878.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf2-RB | 32..673 | 22..663 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:30 Download gff for
BS11878.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf2-RA | 3..652 | 17..670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:06 Download gff for
BS11878.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf2-RB | 32..673 | 22..663 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:06 Download gff for
BS11878.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4386764..4387039 | 22..297 | 100 | | Minus |
| 2L | 4386340..4386705 | 298..663 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:26 Download gff for
BS11878.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4386340..4386705 | 298..663 | 100 | <- | Minus |
| arm_2L | 4386764..4387039 | 22..297 | 100 | | Minus |
BS11878.pep Sequence
Translation from 16 to 663
> BS11878.pep
MFPHLFCLFIAIMDPSIIEFIGEKCMISIIPNFSNEPLHLIYGPVGPFRA
GFPVFVPLWMATHLRKQQKCRIVPPEWMDMDILEEIKEEEKRSKFFTKMP
CEHYMVVAQLVMSTAPDDVPRCEELRTVIKDIFDIRESKLRTSIDAFIKG
EGTYAKLDNLTLLEIHSVRPILPYSLDHIARYQRTATASQRDTSMLSASM
AGSSSGPNSNSLFSQ*
BS11878.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Psf2-PC | 203 | CG18013-PC | 1..203 | 13..215 | 1058 | 100 | Plus |
| Psf2-PB | 203 | CG18013-PB | 1..203 | 13..215 | 1058 | 100 | Plus |
