BS11880.complete Sequence
2087 bp assembled on 2009-12-07
GenBank Submission: KX803223
> BS11880.complete
GAAGTTATCAGTCGACATGAGCACGGAAAAAGAGATAATTTTGCAATTTG
CTCCGTGGGAATCTTTTGTGTCGCCCACTTTCTGGCACAAGCTAGCGGAG
CTTAAGCTCGACCACGATCGCCTGTCCGACTCGAAACGCTCCATTACTGG
ACACTACACAAATCGTAATGCAAGTGGATGCCTTTTGGAAGTAGACTACA
CGGCCTACAACAGAATGGCAAAGCCTCCAAAATTCAGCCATTCCGCTATA
GGCACCATCTACAATAAGAACACAATCGAAGAGTTCAAGGCCCTGGACAA
ATTACAACTGCTGGCCGATGAGGGCAAGGAACTGCTGGCTGATATGTGCA
GTGGTGGCGCCTTGAGAGATCCCAGTCTATTGACCCGGTTCTTTGTTCTC
TCCTTTGCCGATTTAAAGTGTCACAGCTACTACTATTGGTTCGCCTTTCC
GTGCCCGCTGACGCCCACCTTAAAGCTTCAGGGAGCCGTCCAAAAACTGC
GGGACTTGCCCAATAGTAGTAGCTATATAATGGCTCTAAAGGCCTTACCC
ACTGAGTCACAGAACTTCTTCATTCTGTATGCTAATGTGGAGAAGAACAT
TTTCGAAGCCCGTAGTTTAAGTTCCCTTGACGATAAAAATGTTGAGTTCT
GTTATTTTGGTTTTGCTGATCCCAGCGAGTATGAGCATCCAGCTTGGATA
ATGCGAAACTATGCTGCCTTTCTGCTTCAGCAATGTCCCTCTTTTGTTGG
AAAACCATTGAAGTTTCTTGGCCTGCGACACAATCAACAAATGAACATCG
ATGACAGCCTTGTATGGAAGGTGATTCAGACTGAAGCTTGCGATCTTAGC
CAAAGCGAAAATATAAAGTTCGTGGGCTGGGAGCTAAATAAAAATGGCAA
AATGGGGCCAAGAATGGTGTGCATGAGGGACAGCATGGATCCAGCCAAAC
TCGCTGAGAACTCTGTAAACCTGAACCTGAAACTAATGAAGTGGCGCCTT
GTTCCCGATCTCAATCTCGAAATCATCTCCCAAACAAAATGCCTGCTCTT
TGGAGCTGGTACTTTAGGATGCGCTGTAGCTAGAAATCTGCTGTCCTGGG
GATTTAAGCACATAACCCTTTTGGACAGCGGCAAGGTTGGGTTCTCTAAT
CCAGTGCGTCAGAATCTCTACACGCATGCAGATGCTGTGGCAGGCAATCG
GATGAAGGCGACTACAGCTGCTCAGAGATTGAAAGAGATCAATCCGTCTG
CGGAAACGGCGGGTTATGTGCTGGAGATTCCCATGCCTGGGCATACTATT
GGAGAATCGCTTCTAGCCCAGACGAAGGAGCATTTGAAGGTTATCGAAAA
GCTTGTGCAGGACCATGATGTCATCTTTCTGCTCACAGATTCGCGCGAAA
GCCGCTGGCTGCCCACCCTGCTTGGAGCGGCAAAGGAAAAAATTGTCATC
AACGCAGCTTTAGGCTTTGACAGTTATCTGGTAATGCGACATGGCACTAC
GCGTAAGGAAGCAGGCGACGATGGCCAAGAAATCGAAGGACTTAAGTGCA
TTAATGGCGATCAATTAGGTTGCTACTTTTGTAACGATGTTACGGCCCCT
GGAAATTCGCTCAAAGACCGAACTTTGGATCAACAGTGCACAGTGACACG
ACCCGGAGTATCCAACATTGCGGCCAGCTATGCGGTGGAATTGTTGGTGG
CTTTGCTGCAGCATCCTCGTAAGGAGCTGGCACCCGCCTACTATGCACAG
AGTGGGCGTGGCAGGTCGGAGGAGACGGAAGAAAAGGTGCCGGAGGGTCT
GCTAGGAATTTTGCCTCACTCCATCCGTGGAATGCTGTGCAACTACGAGA
ATATTCTGCCCGCCACTCAAAAGTTTGCTCAGTGCATAGCCTGTTCAGCG
GCCGTCCTAAATGAATATAAAAAAGAGGGTCATGCTTTCCTGTTTAAAAC
TTTTGAAACAGCCAAGTTTCTGGAGGATTTGACGGGAATCTCCGAATTCA
AGCGGTTAAACAGCGAGATTATCGATTTTGATGATGAAGAATTTGACATG
TCCGATAGCGACGAGGATTAGAAGCTTTCTAGACCAT
BS11880.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:11:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg7-RA | 2055 | CG5489-PA | 1..2055 | 17..2071 | 10275 | 100 | Plus |
| Atg7-RB | 1533 | CG5489-PB | 197..1533 | 735..2071 | 6685 | 100 | Plus |
| Atg7-RB | 1533 | CG5489-PB | 1..197 | 17..213 | 985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:11:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg7-RA | 2395 | CG5489-RA | 84..2140 | 15..2071 | 10285 | 100 | Plus |
| Atg7-RB | 1873 | CG5489-RB | 282..1618 | 735..2071 | 6685 | 100 | Plus |
| Atg7-RB | 1873 | CG5489-RB | 84..282 | 15..213 | 995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:11:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18624185..18624709 | 735..211 | 2625 | 100 | Minus |
| 2R | 25286936 | 2R | 18623230..18623578 | 1441..1093 | 1745 | 100 | Minus |
| 2R | 25286936 | 2R | 18621038..18621332 | 1901..1607 | 1475 | 100 | Minus |
| 2R | 25286936 | 2R | 18623915..18624128 | 948..735 | 1070 | 100 | Minus |
| 2R | 25286936 | 2R | 18624763..18624961 | 213..15 | 995 | 100 | Minus |
| 2R | 25286936 | 2R | 18623005..18623169 | 1606..1442 | 825 | 100 | Minus |
| 2R | 25286936 | 2R | 18623639..18623783 | 1093..949 | 725 | 100 | Minus |
| 2R | 25286936 | 2R | 18620839..18620956 | 2017..1900 | 590 | 100 | Minus |
| 2R | 25286936 | 2R | 18620721..18620776 | 2071..2016 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:11:51 has no hits.
BS11880.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:48 Download gff for
BS11880.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg7-RA | 90..2144 | 17..2071 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:08:25 Download gff for
BS11880.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg7-RA | 86..2140 | 17..2071 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:23:25 Download gff for
BS11880.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg7-RA | 90..2144 | 17..2071 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:08 Download gff for
BS11880.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg7-RA | 86..2140 | 17..2071 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:08 Download gff for
BS11880.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18623915..18624127 | 736..948 | 100 | <- | Minus |
| 2R | 18624185..18624706 | 214..735 | 100 | <- | Minus |
| 2R | 18624763..18624959 | 17..213 | 100 | | Minus |
| 2R | 18623639..18623783 | 949..1093 | 100 | <- | Minus |
| 2R | 18623005..18623169 | 1442..1606 | 100 | <- | Minus |
| 2R | 18623230..18623577 | 1094..1441 | 100 | <- | Minus |
| 2R | 18620721..18620774 | 2018..2071 | 100 | <- | Minus |
| 2R | 18620839..18620955 | 1901..2017 | 100 | <- | Minus |
| 2R | 18621039..18621332 | 1607..1900 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:08:25 Download gff for
BS11880.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14510510..14510674 | 1442..1606 | 100 | <- | Minus |
| arm_2R | 14508226..14508279 | 2018..2071 | 100 | <- | Minus |
| arm_2R | 14508344..14508460 | 1901..2017 | 100 | <- | Minus |
| arm_2R | 14508544..14508837 | 1607..1900 | 100 | <- | Minus |
| arm_2R | 14510735..14511082 | 1094..1441 | 100 | <- | Minus |
| arm_2R | 14511144..14511288 | 949..1093 | 100 | <- | Minus |
| arm_2R | 14511420..14511632 | 736..948 | 100 | <- | Minus |
| arm_2R | 14511690..14512211 | 214..735 | 100 | <- | Minus |
| arm_2R | 14512268..14512464 | 17..213 | 100 | | Minus |
BS11880.pep Sequence
Translation from 16 to 2070
> BS11880.pep
MSTEKEIILQFAPWESFVSPTFWHKLAELKLDHDRLSDSKRSITGHYTNR
NASGCLLEVDYTAYNRMAKPPKFSHSAIGTIYNKNTIEEFKALDKLQLLA
DEGKELLADMCSGGALRDPSLLTRFFVLSFADLKCHSYYYWFAFPCPLTP
TLKLQGAVQKLRDLPNSSSYIMALKALPTESQNFFILYANVEKNIFEARS
LSSLDDKNVEFCYFGFADPSEYEHPAWIMRNYAAFLLQQCPSFVGKPLKF
LGLRHNQQMNIDDSLVWKVIQTEACDLSQSENIKFVGWELNKNGKMGPRM
VCMRDSMDPAKLAENSVNLNLKLMKWRLVPDLNLEIISQTKCLLFGAGTL
GCAVARNLLSWGFKHITLLDSGKVGFSNPVRQNLYTHADAVAGNRMKATT
AAQRLKEINPSAETAGYVLEIPMPGHTIGESLLAQTKEHLKVIEKLVQDH
DVIFLLTDSRESRWLPTLLGAAKEKIVINAALGFDSYLVMRHGTTRKEAG
DDGQEIEGLKCINGDQLGCYFCNDVTAPGNSLKDRTLDQQCTVTRPGVSN
IAASYAVELLVALLQHPRKELAPAYYAQSGRGRSEETEEKVPEGLLGILP
HSIRGMLCNYENILPATQKFAQCIACSAAVLNEYKKEGHAFLFKTFETAK
FLEDLTGISEFKRLNSEIIDFDDEEFDMSDSDED*
BS11880.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:34:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg7-PA | 684 | CG5489-PA | 1..684 | 1..684 | 3588 | 100 | Plus |
| Atg7-PB | 510 | CG5489-PB | 67..510 | 241..684 | 2313 | 100 | Plus |
| Atg7-PB | 510 | CG5489-PB | 1..76 | 1..73 | 355 | 90.8 | Plus |
