Clone BS11881 Report

Search the DGRC for BS11881

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:118
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptObp83g-RA
Protein status:BS11881.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11881.3prime Sequence

471 bp (471 high quality bases) assembled on 2006-06-16

> BS11881.3prime
ATGGTCTAGAAAGCTTTCAGGCGAAGACCTTACGCACCACGTGGCGGTTG
ATGGGCAGCCAGCAGGAGAAGACTCGGTTGGCCCAGGTGCAGACATCCGA
CTCGGCCTCGTTGTGGTCGATGCACTTCTCCAGGCCGTGCTGGACCGTGG
ACAGGTCTTTGCTGCTCTTGGAGGTGAACTGGGCGATCATGGCGCGCTCG
TCAAATCCCTTCTTCTCCGAGAACAGCTCAAGCTTCTCCAGGAAGCACTT
GACGAAGCAGCTGGTGCGCCGGTGGGCGGGAAACTCGTAGTTCAGGTACT
TCTCGTAGATGTCGTCCGGCACGTAGTAGTCCTCACGGCACTCCTCGAAC
GCCTTCTCTGCGTCGGCGTGGTCCTTCAGCAGGAACTTGGCCGTAGTCTG
GGCCACCAGAAACGTGGCAACGGCTGCAACGATCAGCAGGAGGGATTGGG
ACTGCATGTCGACTGATAACT

BS11881.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG31558-PA 441 Obp83g-RA 1..441 457..17 2205 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
Obp83g-RA 569 CG31558-RA 57..497 457..17 2205 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:40:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6111743..6112126 17..400 1920 100 Plus
3R 32079331 3R 6112187..6112246 398..457 300 100 Plus
Blast to na_te.dros performed on 2015-02-12 17:40:30 has no hits.

BS11881.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:59 Download gff for BS11881.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31558-PA 1..441 17..457 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:04 Download gff for BS11881.3prime
Subject Subject Range Query Range Percent Splice Strand
Obp83g-RA 49..500 12..464 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:47:51 Download gff for BS11881.3prime
Subject Subject Range Query Range Percent Splice Strand
Obp83g-RA 49..500 12..464 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:47:51 Download gff for BS11881.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6111740..6112123 12..397 99 <- Plus
3R 6112187..6112254 398..464 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:04 Download gff for BS11881.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1937462..1937845 12..397 99 <- Plus
arm_3R 1937909..1937976 398..464 95   Plus

BS11881.5prime Sequence

471 bp (471 high quality bases) assembled on 2006-06-16

> BS11881.5prime
GAAGTTATCAGTCGACATGCAGTCCCAATCCCTCCTGCTGATCGTTGCAG
CCGTTGCCACGTTTCTGGTGGCCCAGACTACGGCCAAGTTCCTGCTGAAG
GACCACGCCGACGCAGAGAAGGCGTTCGAGGAGTGCCGTGAGGACTACTA
CGTGCCGGACGACATCTACGAGAAGTACCTGAACTACGAGTTTCCCGCCC
ACCGGCGCACCAGCTGCTTCGTCAAGTGCTTCCTGGAGAAGCTTGAGCTG
TTCTCGGAGAAGAAGGGATTTGACGAGCGCGCCATGATCGCCCAGTTCAC
CTCCAAGAGCAGCAAAGACCTGTCCACGGTCCAGCACGGCCTGGAGAAGT
GCATCGACCACAACGAGGCCGAGTCGGATGTCTGCACCTGGGCCAACCGA
GTCTTCTCCTGCTGGCTGCCCATCAACCGCCACGTGGTGCGTAAGGTCTT
CGCCTGAAAGCTTTCTAGACC

BS11881.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG31558-PA 441 Obp83g-RA 1..441 17..457 2205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
Obp83g-RA 569 CG31558-RA 57..497 17..457 2205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:40:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6111743..6112126 457..74 1920 100 Minus
3R 32079331 3R 6112187..6112246 76..17 300 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:40:35 has no hits.

BS11881.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:00 Download gff for BS11881.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31558-PA 1..441 17..457 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:07 Download gff for BS11881.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp83g-RA 49..500 10..462 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:48:13 Download gff for BS11881.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp83g-RA 49..500 10..462 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:48:13 Download gff for BS11881.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6111740..6112123 77..462 99 <- Minus
3R 6112187..6112254 10..76 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:07 Download gff for BS11881.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1937462..1937845 77..462 99 <- Minus
arm_3R 1937909..1937976 10..76 95   Minus

BS11881.complete Sequence

473 bp assembled on 2006-11-01

GenBank Submission: FJ637011

> BS11881.complete
GAAGTTATCAGTCGACATGCAGTCCCAATCCCTCCTGCTGATCGTTGCAG
CCGTTGCCACGTTTCTGGTGGCCCAGACTACGGCCAAGTTCCTGCTGAAG
GACCACGCCGACGCAGAGAAGGCGTTCGAGGAGTGCCGTGAGGACTACTA
CGTGCCGGACGACATCTACGAGAAGTACCTGAACTACGAGTTTCCCGCCC
ACCGGCGCACCAGCTGCTTCGTCAAGTGCTTCCTGGAGAAGCTTGAGCTG
TTCTCGGAGAAGAAGGGATTTGACGAGCGCGCCATGATCGCCCAGTTCAC
CTCCAAGAGCAGCAAAGACCTGTCCACGGTCCAGCACGGCCTGGAGAAGT
GCATCGACCACAACGAGGCCGAGTCGGATGTCTGCACCTGGGCCAACCGA
GTCTTCTCCTGCTGGCTGCCCATCAACCGCCACGTGGTGCGTAAGGTCTT
CGCCTGAAAGCTTTCTAGACCAT

BS11881.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:28:35
Subject Length Description Subject Range Query Range Score Percent Strand
Obp83g-RA 441 CG31558-PA 1..441 17..457 2205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:28:36
Subject Length Description Subject Range Query Range Score Percent Strand
Obp83g-RA 569 CG31558-RA 57..497 17..457 2205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:28:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6111743..6112126 457..74 1920 100 Minus
3R 32079331 3R 6112187..6112246 76..17 300 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:28:34 has no hits.

BS11881.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:31 Download gff for BS11881.complete
Subject Subject Range Query Range Percent Splice Strand
Obp83g-RA 1..441 17..457 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:49 Download gff for BS11881.complete
Subject Subject Range Query Range Percent Splice Strand
Obp83g-RA 44..495 10..462 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:52:57 Download gff for BS11881.complete
Subject Subject Range Query Range Percent Splice Strand
Obp83g-RA 57..496 17..456 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:31 Download gff for BS11881.complete
Subject Subject Range Query Range Percent Splice Strand
Obp83g-RA 44..495 10..462 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:09 Download gff for BS11881.complete
Subject Subject Range Query Range Percent Splice Strand
Obp83g-RA 57..496 17..456 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:09 Download gff for BS11881.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6111744..6112123 77..456 100 <- Minus
3R 6112187..6112246 17..76 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:52:57 Download gff for BS11881.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1937466..1937845 77..456 100 <- Minus
arm_3R 1937909..1937968 17..76 100   Minus

BS11881.pep Sequence

Translation from 16 to 456

> BS11881.pep
MQSQSLLLIVAAVATFLVAQTTAKFLLKDHADAEKAFEECREDYYVPDDI
YEKYLNYEFPAHRRTSCFVKCFLEKLELFSEKKGFDERAMIAQFTSKSSK
DLSTVQHGLEKCIDHNEAESDVCTWANRVFSCWLPINRHVVRKVFA*

BS11881.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
Obp83g-PA 146 CG31558-PA 1..146 1..146 770 100 Plus
Obp99a-PB 142 CG18111-PB 10..139 17..146 189 30 Plus
Obp99a-PA 142 CG18111-PA 10..139 17..146 189 30 Plus
Obp44a-PB 143 CG2297-PB 4..137 12..142 171 30.4 Plus
Obp44a-PA 143 CG2297-PA 4..137 12..142 171 30.4 Plus