Clone Sequence Records
BS11883.5prime Sequence
697 bp (566 high quality bases) assembled on 2006-06-16
> BS11883.5prime
GAAGTTATCAGTCGACATGAAGCTCTTTGTTTTCCTAGCCTGTCTGGCTG
TCGCCTCTGCCGGAGTGGTGCCCTCCGAGTCCGCCAGGGCTGTCCCAGTG
AAGGACATGCCACGCGCCGGCAAGATCGAGGGTCGCATTACCAATGGATA
CCCGGCCTACGAGGGCAAGATTCCCTACATTGTCGGACTGAGCTTCAACG
ATGGCGGCTACTGGTGCGGGGGTTCCATCATCGACCACACCTGGGTCCTG
ACCGCAGCCCACTGCACGAACAGCGCTAACCATGTGCTCATCTACTTCGG
AGCCAGCTTCCGTCACGAGGCCCAGTACACCCACTGGGTGAGCCGCAGCG
ACATGATCCAACATCCCGACTGGAACGACTTCCTGAACAACGACATCGCT
CTGATCCGCATCCCCCACGTGGACTTCTGGAGCTTGGTCAACAAGGTGGA
GTTGCCCAGCTACAACGATCGCTACAACAGCTACTCCGGCTGGTGGGCAG
TGGCCTCTGGATGGGGTCTGACAGACAACAACAGCGGCATGTCCAACTAC
CTGAACTGCGTCGATGTCCAGATTATTGACAACAACGACTGCCGCAACTA
CTACGGTAGCAACTACATCACCGACAACACCATCTGCTTCAACACCGACG
GCGGCAAGTCCTCCTGCAGCGGTGACTCCGGTGGTCCCTTGGTCCTG
BS11883.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:09:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8579-PA | 816 | Jon44E-RA | 1..681 | 17..697 | 3380 | 99.8 | Plus |
| CG31034-PA | 798 | Jon99Cii-RA | 362..450 | 387..475 | 195 | 88.7 | Plus |
| CG31362-PA | 798 | Jon99Ciii-RA | 362..450 | 387..475 | 195 | 88.7 | Plus |
| CG2229-PA | 804 | Jon99Fii-RA | 416..456 | 435..475 | 180 | 97.5 | Plus |
| CG18030-PA | 804 | Jon99Fi-RA | 96..155 | 121..180 | 175 | 91.6 | Plus |
| CG7118-PA | 783 | Jon66Ci-RA | 388..426 | 440..478 | 170 | 97.4 | Plus |
| CG7170-PA | 789 | Jon66Cii-RA | 400..438 | 440..478 | 170 | 97.4 | Plus |
| CG18030-PA | 804 | Jon99Fi-RA | 416..456 | 435..475 | 155 | 95.1 | Plus |
| CG2229-PA | 804 | Jon99Fii-RA | 96..155 | 121..180 | 150 | 90 | Plus |
| CG8867-PA | 801 | Jon25Bi-RA | 415..454 | 440..479 | 150 | 95 | Plus |
| CG8867-PB | 801 | Jon25Bi-RB | 415..454 | 440..479 | 150 | 95 | Plus |
| CG6580-PA | 780 | Jon65Aii-RA | 335..378 | 387..430 | 145 | 93.1 | Plus |
| CG8867-PA | 801 | Jon25Bi-RA | 363..405 | 388..430 | 140 | 93 | Plus |
| CG8867-PB | 801 | Jon25Bi-RB | 363..405 | 388..430 | 140 | 93 | Plus |
| CG10475-PA | 789 | Jon65Ai-RA | 511..537 | 548..574 | 135 | 100 | Plus |
| CG8869-PA | 831 | Jon25Bii-RA | 114..170 | 124..180 | 135 | 89.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:15:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jon44E-RB | 1397 | CG8579-RB | 20..702 | 15..697 | 3400 | 99.9 | Plus |
| Jon44E-RA | 900 | CG8579-RA | 20..702 | 15..697 | 3400 | 99.9 | Plus |
| Jon99Cii-RA | 862 | CG31034-RA | 126..519 | 129..516 | 720 | 79.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:15:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8691467..8692149 | 15..697 | 3400 | 99.9 | Plus |
| 3R | 32079331 | 3R | 29924097..29924490 | 516..129 | 670 | 79.2 | Minus |
| 3R | 32079331 | 3R | 29922339..29922732 | 129..516 | 640 | 78.7 | Plus |
| 3R | 32079331 | 3R | 30487407..30487808 | 516..121 | 605 | 77.9 | Minus |
| 3R | 32079331 | 3R | 30489083..30489484 | 121..516 | 605 | 77.9 | Plus |
| 2L | 23513712 | 2L | 4954627..4955031 | 522..121 | 520 | 75.8 | Minus |
| 3R | 32079331 | 3R | 30487238..30487310 | 694..622 | 215 | 86.3 | Minus |
| 3R | 32079331 | 3R | 30489581..30489652 | 622..693 | 210 | 86.1 | Plus |
Blast to na_te.dros performed 2015-02-13 16:15:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2799..2996 | 457..657 | 159 | 55.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2533 | 457..656 | 158 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2339..2464 | 525..656 | 151 | 59.8 | Plus |
BS11883.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:00 Download gff for
BS11883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8579-PA | 1..681 | 17..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:44:01 Download gff for
BS11883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon44E-RA | 20..702 | 15..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:26:16 Download gff for
BS11883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon44E-RA | 20..702 | 15..697 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:26:16 Download gff for
BS11883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8691467..8692149 | 15..697 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:44:01 Download gff for
BS11883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4578972..4579654 | 15..697 | 99 | | Plus |
BS11883.complete Sequence
860 bp assembled on 2009-08-24
GenBank Submission: KX804220
> BS11883.complete
GAAGTTATCAGTCGACATGAAGCTCTTTGTTTTCCTAGCCTGTCTGGCTG
TCGCCTCTGCCGGAGTGGTGCCCTCCGAGTCCGCCAGGGCTGTCCCAGTG
AAGGACATGCCACGCGCCGGCAAGATCGAGGGTCGCATTACCAATGGATA
CCCGGCCTACGAGGGCAAGATTCCCTACATTGTCGGACTGAGCTTCAACG
ATGGCGGCTACTGGTGCGGGGGTTCCATCATCGACCACACCTGGGTCCTG
ACCGCAGCCCACTGCACGAACAGCGCTAACCATGTGCTCATCTACTTCGG
AGCCAGCTTCCGTCACGAGGCCCAGTACACCCACTGGGTGAGCCGCAGCG
ACATGATCCAACATCCCGACTGGAACGACTTCCTGAACAACGACATCGCT
CTGATCCGCATCCCCCACGTGGACTTCTGGAGCTTGGTCAACAAGGTGGA
GTTGCCCAGCTACAACGATCGCTACAACAGCTACTCCGGCTGGTGGGCAG
TGGCCTCTGGATGGGGTCTGACAGACAACAACAGCGGCATGTCCAACTAC
CTGAACTGCGTCGATGTCCAGATTATTGACAACAACGACTGCCGCAACTA
CTACGGTAGCAACTACATCACCGACAACACCATCTGCATCAACACCGACG
GCGGCAAGTCCTCCTGCAGCGGTGACTCCGGTGGTCCCTTGGTCCTGCAC
GATAACAACCGCATCGTGGGCATCGTATCCTTCGGCAGCGGAGAGGGCTG
TACCGCCGGCCGCCCCGCCGGATTCACTCGTGTCACCGGATACCTGGACT
GGATCCGCGACCACACCGGCATTGTCTACTAAAAAGCATTTCATTAGCCC
CAAATTTCCC
BS11883.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:31:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jon44E-RB | 816 | CG8579-PB | 1..816 | 17..832 | 4080 | 100 | Plus |
| Jon44E-RA | 816 | CG8579-PA | 1..816 | 17..832 | 4080 | 100 | Plus |
| Jon99Cii-RA | 798 | CG31034-PA | 98..491 | 129..516 | 670 | 79.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jon44E-RB | 1397 | CG8579-RB | 20..837 | 15..832 | 4090 | 100 | Plus |
| Jon44E-RA | 900 | CG8579-RA | 20..837 | 15..832 | 4090 | 100 | Plus |
| Jon99Cii-RA | 862 | CG31034-RA | 126..519 | 129..516 | 670 | 79.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8691467..8692284 | 15..832 | 4090 | 100 | Plus |
| 3R | 32079331 | 3R | 29924097..29924490 | 516..129 | 670 | 79.2 | Minus |
| 3R | 32079331 | 3R | 29922339..29922732 | 129..516 | 640 | 78.7 | Plus |
| 3R | 32079331 | 3R | 30487407..30487808 | 516..121 | 605 | 77.9 | Minus |
| 3R | 32079331 | 3R | 30489083..30489484 | 121..516 | 605 | 77.9 | Plus |
| 2L | 23513712 | 2L | 4954627..4955031 | 522..121 | 520 | 75.8 | Minus |
| 2L | 23513712 | 2L | 4952284..4953008 | 832..117 | 480 | 71.7 | Minus |
| 3L | 28110227 | 3L | 6052746..6053182 | 387..823 | 415 | 73 | Plus |
| 3L | 28110227 | 3L | 8391897..8392142 | 392..637 | 360 | 76.4 | Plus |
| 3L | 28110227 | 3L | 6053724..6054062 | 736..392 | 340 | 73.9 | Minus |
| 2L | 23513712 | 2L | 4950281..4950403 | 517..395 | 315 | 83.7 | Minus |
| 3L | 28110227 | 3L | 8393171..8393296 | 516..391 | 315 | 83.3 | Minus |
| 3R | 32079331 | 3R | 29922829..29923039 | 622..832 | 260 | 74.9 | Plus |
| 3R | 32079331 | 3R | 29923790..29924000 | 832..622 | 260 | 74.9 | Minus |
| 3R | 32079331 | 3R | 30487110..30487310 | 822..622 | 255 | 75.1 | Minus |
| 3R | 32079331 | 3R | 30489581..30489652 | 622..693 | 225 | 87.5 | Plus |
| 3L | 28110227 | 3L | 8391650..8391792 | 121..266 | 215 | 78.1 | Plus |
Blast to na_te.dros performed 2014-11-28 01:31:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2799..2996 | 457..657 | 168 | 56.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2535 | 457..670 | 163 | 55.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2339..2464 | 525..656 | 160 | 60.6 | Plus |
BS11883.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:39 Download gff for
BS11883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon44E-RA | 20..838 | 17..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:19 Download gff for
BS11883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon44E-RA | 22..840 | 17..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:52 Download gff for
BS11883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon44E-RA | 22..840 | 17..835 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:52 Download gff for
BS11883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8691469..8692287 | 17..835 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:19 Download gff for
BS11883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4578974..4579792 | 17..835 | 99 | | Plus |
BS11883.pep Sequence
Translation from 16 to 831
> BS11883.pep
MKLFVFLACLAVASAGVVPSESARAVPVKDMPRAGKIEGRITNGYPAYEG
KIPYIVGLSFNDGGYWCGGSIIDHTWVLTAAHCTNSANHVLIYFGASFRH
EAQYTHWVSRSDMIQHPDWNDFLNNDIALIRIPHVDFWSLVNKVELPSYN
DRYNSYSGWWAVASGWGLTDNNSGMSNYLNCVDVQIIDNNDCRNYYGSNY
ITDNTICINTDGGKSSCSGDSGGPLVLHDNNRIVGIVSFGSGEGCTAGRP
AGFTRVTGYLDWIRDHTGIVY*
BS11883.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:44:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jon44E-PB | 271 | CG8579-PB | 1..271 | 1..271 | 1500 | 100 | Plus |
| Jon44E-PA | 271 | CG8579-PA | 1..271 | 1..271 | 1500 | 100 | Plus |
| Jon99Ciii-PB | 265 | CG31362-PB | 1..265 | 1..271 | 916 | 64.7 | Plus |
| Jon99Ciii-PA | 265 | CG31362-PA | 1..265 | 1..271 | 916 | 64.7 | Plus |
| Jon99Cii-PA | 265 | CG31034-PA | 1..265 | 1..271 | 916 | 64.7 | Plus |
