Clone Sequence Records
BS11884.complete Sequence
1490 bp assembled on 2010-06-30
GenBank Submission: KX802418
> BS11884.complete
GAAGTTATCAGTCGACATGTCCATGTCGTTGGGCTCCAAGATCCGGAAAT
TGGTCACCAGCAGACGGCACTTCCTGCTTTTGCGCCGATCGCTGAACCAA
GATCTGACAACGGCGCTGAGACCCTTCTACTTCGCGGTGCATCCTGACTT
CTTTGCCCAGCATCCGGAGCAGAGGAACACCAACGAGAACTCACTGAAAT
TGCTGAGTGAGCATCTAGAGGCTTTGTATGAACGCAGACAGCGAAGCGGG
GACACCCAAGTGCTCAAGTTCTATGTACGCACCAGTTCAGATGCTGACAA
GCGAGACTCCTTCAAGCTCATCCAAATACGCACGGACTGGCAGAGTACCC
GAGATCCCAAAACCTTTATTCAAGGTCTTCTGGAGTCATGCAACTTGTCC
ACGGAGTATGTGAAGAACATTAAGGCCCAGCCTGAGCCGCCAAAAACCTC
TGGCTTGGATTTTAAACCAAGCCATGACTATCACTATGACATGGAGTTCG
CCGAGTTTGAAACTCAGTTGAAGAATGAACGTGCCAGTAAGCGTCCAGTG
CTGACCACCTGGCTGGAAGAGAATGCTGGCACAGCCAAACAGCGCTCTAA
GGAAACTGCGGATCTGCAGGCCGAAATCGACAAACTGAAAAAAATGCTGG
TAGAGAAACTGGAGTTGCAAGATGCTCGTTACGAGTGCGGCTGGAACATT
GAGCACTACCGTGGCTGTTTAAAGACCCTTGAGCGACTATCCAACACCCA
TTTGTTGGAAATGGCTTCCCTGAAAGGTCGCATAGTGGTTTTTGCTCCCT
TTACGGGCATCAGTTTAGAAGGCCATGTGATGCTTTTTACTGGTGATGTT
CTCAGCACATGGATTGACTTCATCAAGAACATTCCGCACCACGATGCCTA
TTTAAAGGTGGTGCCCGTGTATGAACGAACACTGTCTCAGGTTCTACTGA
ACATCCAGATAGGTCGTCGCAAGTTTATGCCCAAACAACAGGCAAGTGGC
TATGCAAGCTACCTCATGAAGGTCACCACTTCGCTCAGCGATTACCTGGG
CAAACAAAAATATCCGCCGGAATGGCCGAAAACGCTGAAAGAGTTTACCA
TAGTGGTGGAATCAGAGGCAGGTCCTCTGATGGTAAGCCCTACGGGCCAG
TTTATCACACCAGCCACCTGTCCGGGATCCATACTCGTAGACTTCATCAG
TGTAAATCTGGAGCTGGCCAGGGAGCGTATGAAGAAGTACGCTCAGGACA
AGCACATCGAGCAGGAGCTGATGGACTCGTGCATAAAGCAGCTACAGTTG
CAATCGCTGACCAAAGATGATGCCATAACCCCGGATAAAATGATAACATC
CCTTAGAGATTTATACCAGCTTCAGTTGAAAGAACTGCAGGGATGCAAGC
TTCACATAACCCACTACTATTCGGTACTGACCGACGGCGTTGTGTGCATA
CCCTGGGATTTTCTGCAGAGGTAGAAGCTTTCTAGACCAT
BS11884.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:35:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13295-RA | 1458 | CG13295-PA | 1..1458 | 17..1474 | 7290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:35:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13295-RA | 1638 | CG13295-RA | 129..1586 | 17..1474 | 7290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:35:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6073542..6074489 | 1474..527 | 4740 | 100 | Minus |
| 3L | 28110227 | 3L | 6074547..6074974 | 527..100 | 2140 | 100 | Minus |
| 3L | 28110227 | 3L | 6075033..6075117 | 101..17 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:35:39 has no hits.
BS11884.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-30 18:17:11 Download gff for
BS11884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13295-RA | 124..1581 | 17..1474 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:23:01 Download gff for
BS11884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13295-RA | 129..1586 | 17..1474 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:32:19 Download gff for
BS11884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13295-RA | 129..1586 | 17..1474 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:19 Download gff for
BS11884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6073542..6074489 | 527..1474 | 100 | <- | Minus |
| 3L | 6074548..6074972 | 102..526 | 100 | <- | Minus |
| 3L | 6075033..6075117 | 17..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:23:01 Download gff for
BS11884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6066642..6067589 | 527..1474 | 100 | <- | Minus |
| arm_3L | 6067648..6068072 | 102..526 | 100 | <- | Minus |
| arm_3L | 6068133..6068217 | 17..101 | 100 | | Minus |
BS11884.3prime Sequence
785 bp (568 high quality bases) assembled on 2010-02-21
> BS11884.3prime
TGCACAAAATCCCAGGGTATGCACACAACGCCGTCGGTCAGTACCGAATA
GTAGTGGGTTATGTGAAGCTTGCATCCCTGCAGTTCTTTCAACTGAAGCT
GGTATAAATCTCTAAGGGATGTTATCATTTTATCCGGGGTTATGGCATCA
TCTTTGGTCAGCGATTGCAACTGTAGCTGCTTTATGCACGAGTCCATCAG
CTCCTGCTCGATGTGCTTGTCCTGAACGTACTTCTTCATACGCTCCCTGG
CCAGCTCCAGATTTACACTGATGAAGTCTACGAGTATGGATCCCGGACAG
GTGGCTGGTGTGATAAACTGGCCCGTAGGGCTTACCATCAGAGGACCTGC
CTCTGATTCCACCACTATGGTAAACTCTTTCAGCGTTTTCGGCCATTCCG
GCGGATATTTTTGTTTGCCCAGGTAATCGCTGAGCGAAGTGGTGACCTTC
ATGAGGTAGCTTGCATAGCCACTTGCCTGTTGTTTGGGCATAAACTTGCG
ACGACCTATCTGGATGTTCAGTAGAAACCTGAGACAGTGTTCGTTCATAC
ACGGGCACCACCTTTAAATAGGCATCGTGGTGCGGAATGTTCTTGATGAA
GTCAATCCATGGGCTGACAACCTCCCCAGTAAAAAGCATCACATGACCTT
CTAAACTGATGCCCCGAAGGGGAGCAAAAACCACTATGCAACCTTTCAGG
GAAACCATTTCCAACAAAATGGGTGTTGGAAAGTCGCTCAAGGGCCTTTT
AACAGCCACGGTATTGGTCAATGTTCCACCCGCAC
BS11884.3prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:01:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13295-RA | 1638 | CG13295-RA | 797..1579 | 785..1 | 3605 | 97.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:01:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6073549..6074331 | 1..785 | 3555 | 97.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:01:11 has no hits.
BS11884.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 04:06:57 Download gff for
BS11884.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13295-RA | 792..1574 | 1..785 | 97 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 00:02:28 Download gff for
BS11884.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13295-RA | 797..1579 | 1..785 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:15:59 Download gff for
BS11884.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13295-RA | 797..1579 | 1..785 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:15:59 Download gff for
BS11884.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6073549..6074331 | 1..785 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 00:02:28 Download gff for
BS11884.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6066649..6067431 | 1..785 | 97 | | Plus |
BS11884.pep Sequence
Translation from 16 to 1473
> BS11884.pep
MSMSLGSKIRKLVTSRRHFLLLRRSLNQDLTTALRPFYFAVHPDFFAQHP
EQRNTNENSLKLLSEHLEALYERRQRSGDTQVLKFYVRTSSDADKRDSFK
LIQIRTDWQSTRDPKTFIQGLLESCNLSTEYVKNIKAQPEPPKTSGLDFK
PSHDYHYDMEFAEFETQLKNERASKRPVLTTWLEENAGTAKQRSKETADL
QAEIDKLKKMLVEKLELQDARYECGWNIEHYRGCLKTLERLSNTHLLEMA
SLKGRIVVFAPFTGISLEGHVMLFTGDVLSTWIDFIKNIPHHDAYLKVVP
VYERTLSQVLLNIQIGRRKFMPKQQASGYASYLMKVTTSLSDYLGKQKYP
PEWPKTLKEFTIVVESEAGPLMVSPTGQFITPATCPGSILVDFISVNLEL
ARERMKKYAQDKHIEQELMDSCIKQLQLQSLTKDDAITPDKMITSLRDLY
QLQLKELQGCKLHITHYYSVLTDGVVCIPWDFLQR*
BS11884.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:10:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13295-PA | 485 | CG13295-PA | 1..485 | 1..485 | 2524 | 100 | Plus |
| CG2854-PA | 491 | CG2854-PA | 5..489 | 11..485 | 763 | 37.4 | Plus |
