BS11885.complete Sequence
2840 bp assembled on 2009-12-07
GenBank Submission: KX800780
> BS11885.complete
GAAGTTATCAGTCGACATGCCGGAGCAGGATAATTACGATGATGAGTTGG
TCTCCAGCAATCCCAACCAACGGAACTGGCGCGGAATTCTCATCGCGCTG
CTGGTCATCATCATTGTGCTGGCCCTGATTGTTACATCGGTGGTGCTGCT
CACGCCCCCCGATGAGGGACCGCGGGTCAAAGGGCAGCGCATCAAGCTGC
AGGACATCGTCGATGGCCTCTTCGTGCCGCAGCACTCCAACGGCAGCTGG
ATCGATGGCGAGGAGTTCCTGTACCAGGACCATTTGGGTCGCATCTGTCT
GCTGAATGCAGCCAATCGCTCGGAACGTGTCCTCATGTCCAATGTGACAT
TTAAAACCCTGTCACCCTTCACCTTCACCATATCGGCGGACAAGCGCTAT
CTGCTTCTGGCCCAGAATGTTGTGAAACTATTCCGGCACTCGTACTTGGC
CCAGTACACGCTCTACGACATTCAGACCAGCGAGAGCATCAAGCTGCGCC
ACAGTCCGCACCAGGATGAATGGCCATACCTGCACTACGCACGATTTACG
CCAGCTGGAAACGCACTGGTCTGGGTCCAGAGCTACGATATCTATTACCG
AGAGGAGGTCCGCAGTGCGTCCGTGCATCGGATTACCCACGATGCGGTGC
CCGGAGTGGTGTACAACGGCATTCCCGATTGGCTGTACGAAGAGGAGATC
CTTCATGCAAATAATGCAATTTGGATGTCCGACAATGGCCAACTGATGCT
GTATGCCACCTTCAACGACACGCACGTCCAGGAGCAGCACTTCGCCTGGT
ACGGCACGACGGGTCCGTCCGCCGGTGGAGCAGCAGCTGCAGCGGCAGTC
GGCGCTGGAGGAGCCGGAACTGGGAGCCCAGGAGCTGGCGGCAGTAATCC
GCATGCCAGCCTGTATCCGGAAATCAGGTCCTTACGCTACCCCAAGCCGG
GCACTCAGAATCCCACGGTAACCCTACGAGTGGCTGACCTAAAGGATCCG
CTGAAAGTTCACATCACCGACCTGCATCCTCCTCAGATTATAGCCAATGA
AGATCACTACTTCAGCAGTGCCAGTTGGGTGAGTCACTCGAAGATCGCGG
TGGTGTGGCTAAATCGTCCGCAAAACATCTCGGTGGTCAGTGTGTGTAAG
GCTCCATTGTTCCAGTGCATCGAGACCCACCGGGTGAGCGGAGATGGACG
TGGTTGGGTGGACACTGTCGCAGTGCCGCTGTTTGCCGCCAATGCCAGCA
TCTACGTGGCCATATCCCCGCTACGAGATGGACTGTTTGGCTATTTCCGG
CACATTGTGCACGTGGACATCGACAAGAACCGCGTGCTGCCCCTCACCCA
TGGGCCGTACGAAGTGAATCGATTGCTGCACTGGGATCAGCTGGATAATT
GGATTTACTTTCTGGGAACTCCGGAGCGTCTTCCTTCGCAGCAGCATCTG
TATCGCGTATCCGCCCTGCCGGCCCGCCAAGGTCAGGCGCTTCGCTCACC
CGACTGTCTGACTTGTCCGGCAGTGTCGCAGTGGTCCGAGGGCTACGACG
AAGGTCACACCAAGTCGCCGCCCAAGCTGGTGACCGCCTGGGACGATGAC
TGGGAGGATTCCGAGGAAGCGGAGGCTCAACCGCCGCAGCCAGCTCTGCC
GGTGGAGCAACAGCCTCCGGGGCGGGGTCAAAGTGCTCCACTGCCACCGC
CTCCCAGTGATTGCCTGTACCACGAGGCGAAGTTTCCAATTTCGCGGCAG
GCGAAGTACGTACTAATCGATTGCCTGGGACCAGTGGTACCCACCTCCAT
ACTATACGGCTTGAAATCCGCCGCTGCGGACAGTGCCAAGACGAAACGAC
ACAGCACCCAGCAGGAAGAACCACCCACGGAGGGTGGTGATGAGAAACCA
GGGGAGGAGCCGAAGTCTCAGTTCCTGGAACTCCTGGTCATCGTGCAGAA
TAACACGCGCTTGAAGGAGAAGATGGCCAAGACGGCTATGCCGCAAATCA
AGACCTTCCCCGTGATGATCTCCGGCGGTTATCATGCCCAGGTTCGACTA
TATCTGCCGCCTGTGCTGCGCGAGGACGAGATAACACGGTATCCCACCAT
TCTGCATGTTTACTCCGGACCCGGCAGTCAGCTGGTCACCGATCACTGGC
ACGTCGATTGGAACACCTATTTGTCCGGCAGCAAGGATTACATTGTCGTT
GAGATCGACGGACGGGGATCTGCTGGACAGGGCTACCAGCTGCTCCACGA
GGTCTACAAGCGTCTGGGCAGCGTGGAGGTCTCCGATCAACTGGAGGTGA
GCGAGTACCTCAGGGATAACCTGCACTTCATCGACTCACGCAGAATGGGC
GTCTGGGGCTGGAGTTACGGAGGATACACAGCCGCATTGGCCCTCGCCGG
ACAGCAGTCCATTTTCCAGTGCGGCATCAGTGTGTCACCGGTTACCAATT
GGAAGTTATATGATTCCACGTATGCGGAACGCTATCTGAGTTTCCCCAAC
GTGACGGACAACTACAAGGGCTACGAGGAGAGTGACCTGTCCAAGTACGT
GGACAACCTGCGGGATCGCCAGTTCCTGCTGGTCCACGGAACCGCCGACG
ATAATGTCCATGTGCAGCAATCTATGGTCCTGGCCCGTTCTCTGACCAGC
AAGGGAGTGCTCTATAAGCAGCAGATATATCCGGATGAGGGGCACAGCCT
TTCGGGGGTTAAGCGGCACTTGTACCGCTCGATGACCGCCTTCTTTGAGG
ATTGTTTCAAGAAACTGGTGCCGCCGGAGTCGAAAGCTGGTCTTGGCAAT
GGCGGCGATATGCAACAGCAATAAAAGCTTTCTAGACCAT
BS11885.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:30:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11319-RC | 2808 | CG11319-PC | 1..2808 | 17..2824 | 14040 | 100 | Plus |
CG11319-RA | 2808 | CG11319-PA | 1..2808 | 17..2824 | 14040 | 100 | Plus |
CG11319-RB | 2823 | CG11319-PB | 1..2751 | 17..2767 | 13755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:30:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11319-RC | 7965 | CG11319-RC | 1071..3880 | 16..2825 | 14050 | 100 | Plus |
CG11319-RA | 4635 | CG11319-RA | 1071..3880 | 16..2825 | 14050 | 100 | Plus |
CG11319-RB | 4518 | CG11319-RB | 1071..3822 | 16..2767 | 13760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:30:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6574398..6575455 | 2462..1405 | 5290 | 100 | Minus |
2L | 23513712 | 2L | 6574014..6574321 | 2769..2462 | 1540 | 100 | Minus |
2L | 23513712 | 2L | 6576847..6577092 | 936..691 | 1230 | 100 | Minus |
2L | 23513712 | 2L | 6577378..6577592 | 692..478 | 1075 | 100 | Minus |
2L | 23513712 | 2L | 6577653..6577780 | 480..353 | 640 | 100 | Minus |
2L | 23513712 | 2L | 6576041..6576164 | 1174..1051 | 620 | 100 | Minus |
2L | 23513712 | 2L | 6575848..6575965 | 1290..1173 | 590 | 100 | Minus |
2L | 23513712 | 2L | 6579262..6579382 | 262..142 | 590 | 99.2 | Minus |
2L | 23513712 | 2L | 6575613..6575728 | 1404..1289 | 580 | 100 | Minus |
2L | 23513712 | 2L | 6576253..6576367 | 1050..936 | 575 | 100 | Minus |
2L | 23513712 | 2L | 6580413..6580512 | 144..45 | 500 | 100 | Minus |
2L | 23513712 | 2L | 6578905..6579000 | 352..257 | 480 | 100 | Minus |
2L | 23513712 | 2L | 6572485..6572547 | 2825..2763 | 300 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:30:46 has no hits.
BS11885.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:54 Download gff for
BS11885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11319-RA | 1070..3875 | 17..2822 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:51 Download gff for
BS11885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11319-RA | 1072..3877 | 17..2822 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:20:20 Download gff for
BS11885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11319-RA | 1070..3875 | 17..2822 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:01 Download gff for
BS11885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11319-RA | 1072..3877 | 17..2822 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:01 Download gff for
BS11885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6572488..6572542 | 2768..2822 | 100 | <- | Minus |
2L | 6574016..6574320 | 2463..2767 | 100 | <- | Minus |
2L | 6574398..6575455 | 1405..2462 | 100 | <- | Minus |
2L | 6575613..6575727 | 1290..1404 | 100 | <- | Minus |
2L | 6575849..6575963 | 1175..1289 | 100 | <- | Minus |
2L | 6576041..6576164 | 1051..1174 | 100 | <- | Minus |
2L | 6576253..6576366 | 937..1050 | 100 | <- | Minus |
2L | 6576847..6577090 | 693..936 | 100 | <- | Minus |
2L | 6577378..6577589 | 481..692 | 100 | <- | Minus |
2L | 6577653..6577780 | 353..480 | 100 | <- | Minus |
2L | 6578905..6578999 | 258..352 | 100 | <- | Minus |
2L | 6579267..6579381 | 143..257 | 100 | <- | Minus |
2L | 6580415..6580510 | 47..142 | 100 | <- | Minus |
2L | 6586501..6586530 | 17..46 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:51 Download gff for
BS11885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6572488..6572542 | 2768..2822 | 100 | <- | Minus |
arm_2L | 6574016..6574320 | 2463..2767 | 100 | <- | Minus |
arm_2L | 6574398..6575455 | 1405..2462 | 100 | <- | Minus |
arm_2L | 6575613..6575727 | 1290..1404 | 100 | <- | Minus |
arm_2L | 6575849..6575963 | 1175..1289 | 100 | <- | Minus |
arm_2L | 6576041..6576164 | 1051..1174 | 100 | <- | Minus |
arm_2L | 6576253..6576366 | 937..1050 | 100 | <- | Minus |
arm_2L | 6576847..6577090 | 693..936 | 100 | <- | Minus |
arm_2L | 6577378..6577589 | 481..692 | 100 | <- | Minus |
arm_2L | 6577653..6577780 | 353..480 | 100 | <- | Minus |
arm_2L | 6578905..6578999 | 258..352 | 100 | <- | Minus |
arm_2L | 6579267..6579381 | 143..257 | 100 | <- | Minus |
arm_2L | 6580415..6580510 | 47..142 | 100 | <- | Minus |
arm_2L | 6586501..6586530 | 17..46 | 100 | | Minus |
BS11885.pep Sequence
Translation from 16 to 2823
> BS11885.pep
MPEQDNYDDELVSSNPNQRNWRGILIALLVIIIVLALIVTSVVLLTPPDE
GPRVKGQRIKLQDIVDGLFVPQHSNGSWIDGEEFLYQDHLGRICLLNAAN
RSERVLMSNVTFKTLSPFTFTISADKRYLLLAQNVVKLFRHSYLAQYTLY
DIQTSESIKLRHSPHQDEWPYLHYARFTPAGNALVWVQSYDIYYREEVRS
ASVHRITHDAVPGVVYNGIPDWLYEEEILHANNAIWMSDNGQLMLYATFN
DTHVQEQHFAWYGTTGPSAGGAAAAAAVGAGGAGTGSPGAGGSNPHASLY
PEIRSLRYPKPGTQNPTVTLRVADLKDPLKVHITDLHPPQIIANEDHYFS
SASWVSHSKIAVVWLNRPQNISVVSVCKAPLFQCIETHRVSGDGRGWVDT
VAVPLFAANASIYVAISPLRDGLFGYFRHIVHVDIDKNRVLPLTHGPYEV
NRLLHWDQLDNWIYFLGTPERLPSQQHLYRVSALPARQGQALRSPDCLTC
PAVSQWSEGYDEGHTKSPPKLVTAWDDDWEDSEEAEAQPPQPALPVEQQP
PGRGQSAPLPPPPSDCLYHEAKFPISRQAKYVLIDCLGPVVPTSILYGLK
SAAADSAKTKRHSTQQEEPPTEGGDEKPGEEPKSQFLELLVIVQNNTRLK
EKMAKTAMPQIKTFPVMISGGYHAQVRLYLPPVLREDEITRYPTILHVYS
GPGSQLVTDHWHVDWNTYLSGSKDYIVVEIDGRGSAGQGYQLLHEVYKRL
GSVEVSDQLEVSEYLRDNLHFIDSRRMGVWGWSYGGYTAALALAGQQSIF
QCGISVSPVTNWKLYDSTYAERYLSFPNVTDNYKGYEESDLSKYVDNLRD
RQFLLVHGTADDNVHVQQSMVLARSLTSKGVLYKQQIYPDEGHSLSGVKR
HLYRSMTAFFEDCFKKLVPPESKAGLGNGGDMQQQ*
BS11885.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:58:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11319-PC | 935 | CG11319-PC | 1..935 | 1..935 | 4994 | 100 | Plus |
CG11319-PA | 935 | CG11319-PA | 1..935 | 1..935 | 4994 | 100 | Plus |
CG11319-PB | 940 | CG11319-PB | 1..923 | 1..923 | 4902 | 99.3 | Plus |
CG45002-PF | 969 | CG45002-PF | 263..951 | 183..914 | 999 | 30.3 | Plus |
CG17684-PC | 855 | CG17684-PC | 30..517 | 2..510 | 717 | 31.3 | Plus |
CG45002-PF | 969 | CG45002-PF | 16..190 | 1..180 | 305 | 35.6 | Plus |