BS11886.complete Sequence
2285 bp assembled on 2009-12-07
GenBank Submission: KX801502
> BS11886.complete
GAAGTTATCAGTCGACATGTGCAATTTGTTTTGGCTTTCGGCCTGTTTTT
TGGCCCTCTGTCTGCCCCATGCCCTCAGCGAATCCAATGCCACAAGTGTT
GAGGGGACGCCTAAGACTGAGTCAAAAGCAGAGCTGGTGCCCACGGCGGA
GAAACTAATCCGATATCGCCGTCAGCCTCCCTACGCCGTGATCAAGCGCT
CCAAGCTGCGCCGGCGGACTAAGGGTCATCCGAAGATTAAGTACGGACCA
CCACCGCCCCACATTCGCTACTCGAAACCATCATTCCCTGCCCATACCCA
TATCGAGGAGCCAAGCTTCTCCCTCGATGACTTTCAGCACCTGAAGTTCG
ATGGTGCGGACTTTAAGATACCCACTTCCAGTTACGAAGCGCAGTCCATG
GATCTGGACTTCTACAATCACGATACGGAACCGGATCTCTATGGAGCACA
CAAATTCCCTAGCCTGGACTTTGGCTTAGTCACCACACATGAGCATGTTC
CTCACCAACAGTACGGGTTGCCTCCTGTGCAGCAGAGCTTCCAGCCAGAT
CACTCTTTTACTACGCACTATGAGCCACCTCCAGCTCCGGCTCATCCGCC
GGCTACCCGCTATGGAGTACCCGACGCTCCTGCTCCAGTGCCCAGCTATC
CACATCAGGATCTGCCAGCTCCTGACTCCTATTCCATATATGAGCAGAAG
ATTCCCAATGTGGGCTACCATCAGAACTTTGCGGAACCACCCAAGCATCC
CCCCAAACATGGTTCCATCAATAATCCTAACTTTGAGATCGCCTATTCTC
CGCCCGCATTCGAGATCAGCACTTCCTATCAGTCCAATCACCAGCAGAGC
TACGTTCCACCCCATCCCCCATCATCTCATGATGGGTTCGCGGAGCCACC
GTCTAATAATTATGTGAAGCCTCCTCCCCAGCACCCTCCAACTAATAGTT
ACGCACCACCCCAACATCCTTCTTCGAGCTATGACCAGCCACCGCAGCAT
CCATCATCGAGTTATGACCAGCCGCCACAGCATCCTCCTCCCAGCTATAG
TCAGCCTCCCCAACACCCTTCTTCTAGTTATGATCAACCTGCTCAACATC
CCTCATCCAGTTATGATCAACCTCCTAAACATCCGTCTTCCAGTTACGAA
CAACCTCCCCAGCATCCCTCCTCCAGTTACGATCAACCTCCCCAACATCC
CTCCTCCAGTTATGATCAACCTCCTGAGGAGCACCCAAGCTCCTACCAAC
ATCCTCCAACATCCACATATGATCAGGCACCCCAGCATCCACCATCAAAC
TATGTTTCCTCCGATTCCCATTCCATCAATACATATCCGCAGGACGATTA
CTCACCACCGTCGCAGGAGTTGCCCTTAAATCCACACCACAAGTTTCCTA
GTTTCGATTTCCCCAAATCCAGCTACGAAGTGCCCATCTACGATCCCGTT
CCTTTCGAAGCCTCCAATCGCGATGAACAGGAGTCCTATCCACCCATCTT
GGCATCCTCTCCCGATCTGAATGAGATAACTTCAGATGCCCATGCGGCTG
GTAGTTCCAAGCGGCGTAAGAGAAAGCGAAAGCCCAGTCCTGGAGTTGTC
CCCGCAAAGCATACGCTTGATGTTCCTGAGCTCCAGCAGGCCTATGATGC
GGATAGCCACTTGGGGGAGTCACACGAGTCAAATGCAGATACGGATGCAA
ATAGTTCTCACTATGTGGAGAGGAAGCAGAGCTTTTTCAACTTTGTCACG
CCCACAACAACGACGTCGACGACTCCGGCTCCTTGGACTCCAATGAGGGG
CAGGGGTAGTACGACCCGTGCGGCATTCATACCAACCATTGTAACAAGTA
CTCCGAAAACACCCACTACTGATCGCAGTAGACATCGTGGCTCTTCTCGG
TATCGCACAAAGCAGCAACCCGGAAATCCCAGTTCATCCGATCCCACCAA
TACCAGCGTTCAAATCGATCAATCCCACTCGCAAAGCTATTACGATGGAA
CCATTGCACCACCGACCAGGCAACAGTTTTCACCCACAACCGGAGGACGT
GGCTCGAGACCGACAAGACCAAGTTACGTCAGAAATCACGGCCCGGTGTC
ACCGCTGGCATTGCAGCCCGCCGATGGTAGGGGTCCATCCACATCCAAGC
GGACTACTAAGGGCGTCTTCGACACGACGCTGTTCAAGAGTCCCCTCAGC
GATAGGGAGATGGAGAGAAATCTCCATGGGCTGCGTCAGAACTTGCCAAA
AAATCATAAACTATTCTGAAAGCTTTCTAGACCAT
BS11886.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:22:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15005-RA | 2253 | CG15005-PA | 1..2253 | 17..2269 | 11265 | 100 | Plus |
| CG15005-RA | 2253 | CG15005-PA | 940..1175 | 989..1224 | 475 | 80.1 | Plus |
| CG15005-RA | 2253 | CG15005-PA | 973..1208 | 956..1191 | 475 | 80.1 | Plus |
| CG15005-RA | 2253 | CG15005-PA | 943..1110 | 1058..1225 | 315 | 79.2 | Plus |
| CG15005-RA | 2253 | CG15005-PA | 1042..1209 | 959..1126 | 315 | 79.2 | Plus |
| CG15005-RA | 2253 | CG15005-PA | 949..1142 | 1031..1224 | 295 | 76.8 | Plus |
| CG15005-RA | 2253 | CG15005-PA | 1015..1208 | 965..1158 | 295 | 76.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:22:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15005-RA | 2648 | CG15005-RA | 223..2476 | 17..2270 | 11270 | 100 | Plus |
| CG15005-RA | 2648 | CG15005-RA | 1162..1397 | 989..1224 | 475 | 80.1 | Plus |
| CG15005-RA | 2648 | CG15005-RA | 1195..1430 | 956..1191 | 475 | 80.1 | Plus |
| CG15005-RA | 2648 | CG15005-RA | 1165..1332 | 1058..1225 | 315 | 79.2 | Plus |
| CG15005-RA | 2648 | CG15005-RA | 1264..1431 | 959..1126 | 315 | 79.2 | Plus |
| CG15005-RA | 2648 | CG15005-RA | 1171..1364 | 1031..1224 | 295 | 76.8 | Plus |
| CG15005-RA | 2648 | CG15005-RA | 1237..1430 | 965..1158 | 295 | 76.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:22:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4200997..4203217 | 2270..50 | 11105 | 100 | Minus |
| 3L | 28110227 | 3L | 4202043..4202278 | 1191..956 | 475 | 80.1 | Minus |
| 3L | 28110227 | 3L | 4202076..4202311 | 1224..989 | 475 | 80.1 | Minus |
| 3L | 28110227 | 3L | 4202042..4202209 | 1126..959 | 315 | 79.2 | Minus |
| 3L | 28110227 | 3L | 4202141..4202308 | 1225..1058 | 315 | 79.2 | Minus |
| 3L | 28110227 | 3L | 4202043..4202236 | 1158..965 | 295 | 76.8 | Minus |
| 3L | 28110227 | 3L | 4202109..4202302 | 1224..1031 | 295 | 76.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:22:18 has no hits.
BS11886.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:58 Download gff for
BS11886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15005-RA | 222..2473 | 17..2268 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:39 Download gff for
BS11886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15005-RA | 223..2474 | 17..2268 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:33 Download gff for
BS11886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15005-RA | 222..2473 | 17..2268 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:03 Download gff for
BS11886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15005-RA | 223..2474 | 17..2268 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:03 Download gff for
BS11886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4200999..4203217 | 50..2268 | 100 | <- | Minus |
| 3L | 4204085..4204117 | 17..49 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:39 Download gff for
BS11886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4200999..4203217 | 50..2268 | 100 | <- | Minus |
| arm_3L | 4204085..4204117 | 17..49 | 100 | | Minus |
BS11886.pep Sequence
Translation from 16 to 2268
> BS11886.pep
MCNLFWLSACFLALCLPHALSESNATSVEGTPKTESKAELVPTAEKLIRY
RRQPPYAVIKRSKLRRRTKGHPKIKYGPPPPHIRYSKPSFPAHTHIEEPS
FSLDDFQHLKFDGADFKIPTSSYEAQSMDLDFYNHDTEPDLYGAHKFPSL
DFGLVTTHEHVPHQQYGLPPVQQSFQPDHSFTTHYEPPPAPAHPPATRYG
VPDAPAPVPSYPHQDLPAPDSYSIYEQKIPNVGYHQNFAEPPKHPPKHGS
INNPNFEIAYSPPAFEISTSYQSNHQQSYVPPHPPSSHDGFAEPPSNNYV
KPPPQHPPTNSYAPPQHPSSSYDQPPQHPSSSYDQPPQHPPPSYSQPPQH
PSSSYDQPAQHPSSSYDQPPKHPSSSYEQPPQHPSSSYDQPPQHPSSSYD
QPPEEHPSSYQHPPTSTYDQAPQHPPSNYVSSDSHSINTYPQDDYSPPSQ
ELPLNPHHKFPSFDFPKSSYEVPIYDPVPFEASNRDEQESYPPILASSPD
LNEITSDAHAAGSSKRRKRKRKPSPGVVPAKHTLDVPELQQAYDADSHLG
ESHESNADTDANSSHYVERKQSFFNFVTPTTTTSTTPAPWTPMRGRGSTT
RAAFIPTIVTSTPKTPTTDRSRHRGSSRYRTKQQPGNPSSSDPTNTSVQI
DQSHSQSYYDGTIAPPTRQQFSPTTGGRGSRPTRPSYVRNHGPVSPLALQ
PADGRGPSTSKRTTKGVFDTTLFKSPLSDREMERNLHGLRQNLPKNHKLF
*
BS11886.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:11:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15005-PA | 750 | CG15005-PA | 1..750 | 1..750 | 4147 | 100 | Plus |
| Muc91C-PB | 949 | CG7709-PB | 192..835 | 23..710 | 378 | 28.2 | Plus |
| Muc91C-PA | 950 | CG7709-PA | 193..836 | 23..710 | 378 | 28.2 | Plus |
| Muc91C-PB | 949 | CG7709-PB | 116..767 | 53..686 | 372 | 28.8 | Plus |
| Muc91C-PA | 950 | CG7709-PA | 117..768 | 53..686 | 372 | 28.8 | Plus |
| Muc91C-PB | 949 | CG7709-PB | 338..941 | 72..546 | 290 | 27.6 | Plus |
| Muc91C-PA | 950 | CG7709-PA | 339..942 | 72..546 | 290 | 27.6 | Plus |
| CG13722-PB | 708 | CG13722-PB | 338..663 | 162..499 | 286 | 28.9 | Plus |
| Muc91C-PB | 949 | CG7709-PB | 115..531 | 292..710 | 280 | 28.2 | Plus |
| Muc91C-PA | 950 | CG7709-PA | 116..532 | 292..710 | 280 | 28.2 | Plus |
| CG13722-PB | 708 | CG13722-PB | 224..562 | 164..494 | 258 | 26.8 | Plus |
| CG13722-PB | 708 | CG13722-PB | 72..455 | 162..499 | 246 | 25.9 | Plus |
| Vml-PB | 578 | CG34333-PB | 34..545 | 147..687 | 235 | 25.2 | Plus |
| CG13722-PB | 708 | CG13722-PB | 402..695 | 159..482 | 232 | 28.3 | Plus |
