BS11887.complete Sequence
1256 bp assembled on 2006-11-01
GenBank Submission: FJ637012
> BS11887.complete
GAAGTTATCAGTCGACATGATCCACTGGAGACTTCTTTCCGCCCTACTTG
TGGGCCTGGCTATAGCTTTAACGCTTCCAGTCGACGGGGAGCTCTTGGCC
AGATCGCCGGCCAGCGTCTCGAGTAACCGCTTTGGCCTACGCCTAACTAC
TAAGTTGGGACTAACTCAACCAGATGCAAATGTGGTGGTTTCCCCCTTGC
TTATACAGGCGGCGCTCAGCCTGCTGTATGCGGAAAGTTCTTCGGAGTAC
GGTAGCCAACTCCGCCAGGCTCTGGAGCTGACCCACGCCAGTCACCCGAA
GCTTGCGGTGCAGGACTTCGAGACCCTTTTGACGGACCTCAAGCAGTCGG
CTGCCATTGGCTGTCGCTTGCGGTTGCTGAGTGACCTCTACGCACAGCAG
CGCTTCACCTTCAACTTCCGCAATGAATTCGAGACCTTGGCCGCCCGAAT
GGGCGTCGGCTGCCACCGCTTGTCGTGGGAAAGTGCGTCGAACGCGGCCC
AGGATATCAACTACGCCTTCCTTAGCCGCAGCAACTTCAGCCTGGGGGAG
CTCGTCAGTGCCCCCCAACTCGAGTCCTTGGCCGAGCACAACACGCCCTT
TTTACACGTCTCGGGAGTCACCTTCCGAGCCCCTTGGGCTTGGGCCTTCG
ATCCTACCGAGACGCAGAGCATCAACTTCTTTGCCGGGGGAAATCGCCCC
AGGCTGGTGGATGCCATGTTCGGACAGCACCGCTACAGGTACGCTGAAGT
GCCCGCTCTGGACGCCCAGCTCATTGAGGTGCCCTTCGCCACTGCAGACC
TCCGAATGCTCATTGTATTTCCCAATCGGCCTGATGGCCTGGCCCAACTT
GAGAGGAAGCTGGCGCAGTCCGATCTCCACCAGCTAAGGTCCCAGCTCGA
GGAGCGCAAGGTGGCCCTCACTCTGCCCAAGCTCAGAGTGCTAGTCCACT
CCGACCTGAAGCACGTGCTCGAGGAGTTGGGTCTGGCAAAACTATTCACA
TCGGAGGTCCACCTGAGCGAGGTCTTCAGCTCCATCCTGTCCAGTTCGGC
TCCACCCTTGGGAGCAGTGGTCCAGAGTGGTCTCCTGGAGCTACAGGAGG
ATGGCGGCAATGCCGACGACTCGTTCTCCTTCGGGGATCTGTTCCGACGA
GCCCTGCCCCTGGTCATCAATCACCCGTTCTTTTACGCCATCGGCAATGG
CAAAACTCTGCTGCTGTCCGGCCACATCGTCGACATCTGAAAGCTTTCTA
GACCAT
BS11887.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:18:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn43Ad-RA | 1224 | CG1859-PA | 1..1224 | 17..1240 | 6120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn43Ad-RA | 1432 | CG1859-RA | 65..1290 | 15..1240 | 6130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7154399..7155360 | 976..15 | 4810 | 100 | Minus |
| 2R | 25286936 | 2R | 7154050..7154202 | 1127..975 | 765 | 100 | Minus |
| 2R | 25286936 | 2R | 7153880..7153992 | 1240..1128 | 565 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:18:46 has no hits.
BS11887.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:32 Download gff for
BS11887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn43Ad-RA | 1..1224 | 17..1240 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:51 Download gff for
BS11887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn43Ad-RA | 59..1302 | 9..1256 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:39:41 Download gff for
BS11887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn43Ad-RA | 67..1289 | 17..1239 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:32 Download gff for
BS11887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn43Ad-RA | 59..1302 | 9..1256 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:50 Download gff for
BS11887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn43Ad-RA | 67..1289 | 17..1239 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:50 Download gff for
BS11887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7154050..7154200 | 977..1127 | 100 | <- | Minus |
| 2R | 7153881..7153992 | 1128..1239 | 100 | <- | Minus |
| 2R | 7154399..7155358 | 17..976 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:39:41 Download gff for
BS11887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3041386..3041497 | 1128..1239 | 100 | <- | Minus |
| arm_2R | 3041555..3041705 | 977..1127 | 100 | <- | Minus |
| arm_2R | 3041904..3042863 | 17..976 | 100 | | Minus |
BS11887.pep Sequence
Translation from 16 to 1239
> BS11887.pep
MIHWRLLSALLVGLAIALTLPVDGELLARSPASVSSNRFGLRLTTKLGLT
QPDANVVVSPLLIQAALSLLYAESSSEYGSQLRQALELTHASHPKLAVQD
FETLLTDLKQSAAIGCRLRLLSDLYAQQRFTFNFRNEFETLAARMGVGCH
RLSWESASNAAQDINYAFLSRSNFSLGELVSAPQLESLAEHNTPFLHVSG
VTFRAPWAWAFDPTETQSINFFAGGNRPRLVDAMFGQHRYRYAEVPALDA
QLIEVPFATADLRMLIVFPNRPDGLAQLERKLAQSDLHQLRSQLEERKVA
LTLPKLRVLVHSDLKHVLEELGLAKLFTSEVHLSEVFSSILSSSAPPLGA
VVQSGLLELQEDGGNADDSFSFGDLFRRALPLVINHPFFYAIGNGKTLLL
SGHIVDI*
BS11887.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn43Ad-PA | 407 | CG1859-PA | 1..407 | 1..407 | 2049 | 100 | Plus |
| Spn42Da-PL | 379 | CG9453-PL | 16..376 | 39..404 | 361 | 28.5 | Plus |
| Spn42Da-PK | 379 | CG9453-PK | 16..376 | 39..404 | 361 | 28.5 | Plus |
| Spn42Da-PH | 379 | CG9453-PH | 16..376 | 39..404 | 361 | 28.5 | Plus |
| Spn42Da-PG | 379 | CG9453-PG | 16..376 | 39..404 | 361 | 29 | Plus |
