BS11889.complete Sequence
1874 bp assembled on 2009-12-07
GenBank Submission: KX806532
> BS11889.complete
GAAGTTATCAGTCGACATGGCGTTTGGAACAATGACGTCTTTGCTTGGCA
TGATCCCGCTGCTGGCGATCGGCATGAATTTCTATCGCTATCAAAGCGTA
GATCCCGAGAACAAGGTCCAGGAGCCAACCGTCATACGTCGTCAGTATGA
TTTCGTGGTGATTGGCGGCGGATCCGCTGGAGCTGTGGTGGCGAATCGCC
TGAGTGAGGTGCGCAACTGGACCGTTCTGCTACTCGAAGCCGGCGGTGAT
GAAACGGAGATCTCGGACGTGCCAGCTCTGGCGGGCTATCTGCAGCTTAC
GGAGTTGGACTGGAAGTACCAGACTACGCCTTCATCCACCCGCCAGTATT
GTCAGGCGATGAAGGGCGATCGCTGCTTTTGGCCAAGAGGAAAAGTCTTG
GGCGGAAGTTCTGTTTTAAATGCTATGGTCTATGTTCGTGGCTCCAAGAA
CGACTATAATCATTGGGCATCGTTGGGTAATCCGGGTTGGGACTACGACA
GCATGCTCAAATACTTCCTGAAATCGGAAGACGTACGAAATCCCTATTTG
GCCAAGACGCCATACCATGAAACAGGTGGATACCTGACGGTTCAGGAGGC
TCCATGGCGTACACCACTCTCGATAGCCTTCCTCCAAGCGGGCATTGAGA
TGGGCTATGAGAACCGGGACATTAATGGAGCCCAACAGACGGGCTTCATG
CTTACGCAAAGCACAATTCGCCGCGGTGCTAGATGCTCCACGGGCAAGGC
CTTCATTCGTCCAGTTCGACAGCGTAAGAATTTCGATGTCCTGCTCCATG
CGGAGGCCACAAGGATCCTGTTCGATAAGCAGAAGCGAGCCATTGGTGTG
GAATACATGAGGGGTGGCCGCAAGAATGTGGTTTTCGTGAGAAGAGAAGT
GATAGCCAGTGCTGGAGCTCTGAATACTCCCAAATTACTGATGCTTTCCG
GAGTTGGTCCCGCTGAGCATCTGCAGGAGCACAATATCCCTGTTATTTCG
GATCTCCCAGTGGGCAACAATATGCAGGATCATGTGGGTCTGGGTGGACT
CACCTTCGTGGTGGACGCTCCACTGACTGTCACCCGCAATCGTTTCCAAA
CCATTCCAGTTTCCATGGAATATATACTAAGGGAACGGGGTCCGATGACA
TTTTCGGGCGTAGAAGGTGTCGCCTTTCTAAACACCAAGTACCAAGATCC
CTCGGTAGACTGGCCCGATGTCCAATTTCATTTTTGTCCCAGTTCCATTA
ACTCCGATGGTGGCGAGCAGATAAGAAAGATACTGAATCTACGAGATGGT
TTCTACAACACAGTGTACAAACCACTGCAGCACAGTGAAACCTGGTCGAT
TTTGCCCCTGTTGCTGAGACCCAAGAGCACGGGATGGGTGCGCTTGAATT
CGAGGAATCCGCAGCATCAGCCCAAGATCATACCAAACTATTTTGCCCAC
CAGGAGGACATCGATGTGCTGGTCGAGGGCATCAAGTTGGCTATCAATGT
CTCGAATACCCAGGCATTTCAGCGTTTCGGCTCCAGATTGCATAATATTC
CGCTGCCAGGCTGTAGACATTTGCCATTCCAGTCGAATGAATATTGGGCA
TGTTGCATCAAGGAGTTTACGTTCACCATCTATCATCCCGCCGGCACATG
TCGCATGGGACCCAGCTGGGATGTTACGGCCGTGGTGGATCCGAGATTAC
GGGTCTATGGCGTATCCGGAGTTCGAGTGGTGGACGCCAGCATTATGCCA
ACGATCGTGAATGGGAATCCCAATGCTCCGGTCATCGCGATTGGCGAAAA
GGCCTCCGATTTGATCAAAGAAGATTGGGGCGTCAGGCGGGCGCACACTT
CCGCTTAGAAGCTTTCTAGACCAT
BS11889.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:12:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45065-RA | 1842 | CG45065-PA | 1..1842 | 17..1858 | 9210 | 100 | Plus |
| CG9518-RC | 2112 | CG9518-PC | 386..767 | 369..750 | 245 | 70.9 | Plus |
| CG9518-RB | 2112 | CG9518-PB | 386..767 | 369..750 | 245 | 70.9 | Plus |
| CG9518-RC | 2112 | CG9518-PC | 1678..1851 | 1655..1828 | 195 | 74.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:12:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45065-RA | 3359 | CG45065-RA | 1295..3138 | 15..1858 | 9220 | 100 | Plus |
| CG45064-RA | 3359 | CG45064-RA | 1295..3138 | 15..1858 | 9220 | 100 | Plus |
| CG9518-RC | 3952 | CG9518-RC | 1331..1712 | 369..750 | 245 | 70.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:12:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14875591..14877315 | 1858..134 | 8625 | 100 | Minus |
| X | 23542271 | X | 14877545..14877663 | 133..15 | 595 | 100 | Minus |
| X | 23542271 | X | 14865229..14865610 | 750..369 | 245 | 70.9 | Minus |
| X | 23542271 | X | 14864145..14864318 | 1828..1655 | 195 | 74.1 | Minus |
| X | 23542271 | X | 14921251..14921417 | 324..158 | 190 | 74.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:12:23 has no hits.
BS11889.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:54 Download gff for
BS11889.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9517-RB | 1300..3141 | 17..1858 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:08:37 Download gff for
BS11889.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9517-RB | 1296..3137 | 17..1858 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:56:31 Download gff for
BS11889.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9517-RB | 1300..3141 | 17..1858 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:18 Download gff for
BS11889.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45064-RA | 1297..3138 | 17..1858 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:18 Download gff for
BS11889.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14875591..14877315 | 134..1858 | 100 | <- | Minus |
| X | 14877545..14877661 | 17..133 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:08:37 Download gff for
BS11889.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14769624..14771348 | 134..1858 | 100 | <- | Minus |
| arm_X | 14771578..14771694 | 17..133 | 100 | | Minus |
BS11889.pep Sequence
Translation from 16 to 1857
> BS11889.pep
MAFGTMTSLLGMIPLLAIGMNFYRYQSVDPENKVQEPTVIRRQYDFVVIG
GGSAGAVVANRLSEVRNWTVLLLEAGGDETEISDVPALAGYLQLTELDWK
YQTTPSSTRQYCQAMKGDRCFWPRGKVLGGSSVLNAMVYVRGSKNDYNHW
ASLGNPGWDYDSMLKYFLKSEDVRNPYLAKTPYHETGGYLTVQEAPWRTP
LSIAFLQAGIEMGYENRDINGAQQTGFMLTQSTIRRGARCSTGKAFIRPV
RQRKNFDVLLHAEATRILFDKQKRAIGVEYMRGGRKNVVFVRREVIASAG
ALNTPKLLMLSGVGPAEHLQEHNIPVISDLPVGNNMQDHVGLGGLTFVVD
APLTVTRNRFQTIPVSMEYILRERGPMTFSGVEGVAFLNTKYQDPSVDWP
DVQFHFCPSSINSDGGEQIRKILNLRDGFYNTVYKPLQHSETWSILPLLL
RPKSTGWVRLNSRNPQHQPKIIPNYFAHQEDIDVLVEGIKLAINVSNTQA
FQRFGSRLHNIPLPGCRHLPFQSNEYWACCIKEFTFTIYHPAGTCRMGPS
WDVTAVVDPRLRVYGVSGVRVVDASIMPTIVNGNPNAPVIAIGEKASDLI
KEDWGVRRAHTSA*
BS11889.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:35:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45065-PA | 613 | CG45065-PA | 1..613 | 1..613 | 3255 | 100 | Plus |
| CG9518-PA | 703 | CG9518-PA | 16..617 | 3..604 | 1935 | 58.1 | Plus |
| CG9518-PC | 703 | CG9518-PC | 16..617 | 3..604 | 1935 | 58.1 | Plus |
| CG9518-PB | 703 | CG9518-PB | 16..617 | 3..604 | 1935 | 58.1 | Plus |
| CG9503-PA | 626 | CG9503-PA | 20..620 | 7..604 | 1819 | 55.1 | Plus |
