Clone Sequence Records
BS11890.3prime Sequence
725 bp (724 high quality bases) assembled on 2006-06-16
> BS11890.3prime
ATGGTCTAGAAAGCTTTTACTTTTTCTGTTTCTTCTTCTCGAGCTCCTCC
TCCTTCTCCTTCTCGATGATCTTAACATAATCGGTAATGACATCGGTGTC
CAGCATTTTCAGTGGCTTGCCGTTCTCCATGATGGCCACCTCCAGATTGT
TCTGGCCTGACTGCGCCACCTCGAGCAGCGCACGGATGGCCAGTTTGACG
GCTCCGTGCTCGTTGGCCACCTCCTCCTCGCGGTAGGACTTCTCGAAGAA
CTCGCGCACAACCTTTGCCGATCGCCCGGTGGCGTTAGCCTTATACTCGT
AGAAAATGCCCGACGGCTCAGTCTGGAACAGATGCGCAGAGCCATCGGCA
TCGAAGCCGCCAATAAGGCAGGAAATACCGAAGGGACGGCGGCCATTGCT
CTGCGTGTATTTTTGTTTCAGCTGGGCAATGAATCTGGTTATGTACTCGA
GGGTCACGGGATCCTCGACATTGAGACGATGGCTCTGGCACTCCACCTGG
GCACGATTGATCATGATGCGAGCGTCGGCCGTGAGACCGGCAAAAGCCAT
TACAACGTGGTTGTCGAGCATGCAAATCTTGCGCACCTTTCGATCCTCCT
GCAGTTGGGCCACCGACTTCTTCTCCACGCCAAGCACAACGCAGTTGGCG
CCGCGAACTCCGACCGCAGTCGATCCCTTGCGAACGGCCTCCTGGGCATA
CTCCACCTGCAGGAGGTGACCGTCG
BS11890.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:09:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3422-PA | 750 | Pros28.1-RA | 42..750 | 725..17 | 3545 | 100 | Minus |
CG4569-PA | 759 | Pros28.1B-RA | 42..83 | 725..684 | 160 | 95.2 | Minus |
CG4569-PA | 759 | Pros28.1B-RA | 319..374 | 448..393 | 155 | 91 | Minus |
CG4569-PA | 759 | Pros28.1B-RA | 164..212 | 603..555 | 145 | 91.8 | Minus |
CG17268-PA | 750 | Pros28.1A-RA | 310..392 | 457..375 | 140 | 86.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:00:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha4-RA | 1176 | CG3422-RA | 190..898 | 725..17 | 3545 | 100 | Minus |
Prosalpha4T1-RA | 891 | CG17268-RA | 105..726 | 718..97 | 1040 | 78.4 | Minus |
Prosalpha4T2-RB | 1254 | CG4569-RB | 132..581 | 725..276 | 825 | 79.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:00:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16276890..16277309 | 436..17 | 2100 | 100 | Minus |
X | 23542271 | X | 16276596..16276826 | 665..435 | 1155 | 100 | Minus |
3R | 32079331 | 3R | 20748349..20748970 | 97..718 | 1040 | 77.8 | Plus |
2R | 25286936 | 2R | 24501794..24501988 | 437..631 | 390 | 80 | Plus |
X | 23542271 | X | 16276459..16276521 | 725..663 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-05 02:00:19 has no hits.
BS11890.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:00 Download gff for
BS11890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3422-PA | 42..750 | 17..725 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:06:45 Download gff for
BS11890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha4-RA | 190..898 | 17..725 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:01:29 Download gff for
BS11890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha4-RA | 190..898 | 17..725 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:01:29 Download gff for
BS11890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16276459..16276519 | 665..725 | 100 | -> | Minus |
X | 16276597..16276826 | 435..664 | 100 | -> | Minus |
X | 16276892..16277309 | 17..434 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:06:45 Download gff for
BS11890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16170492..16170552 | 665..725 | 100 | -> | Minus |
arm_X | 16170630..16170859 | 435..664 | 100 | -> | Minus |
arm_X | 16170925..16171342 | 17..434 | 100 | | Minus |
BS11890.5prime Sequence
780 bp (731 high quality bases) assembled on 2006-06-16
> BS11890.5prime
GAAGTTATCAGTCGACATGTCCTCACGCTACGATCGTGCTGTAACCATAT
TCTCTCCCGACGGTCACCTCCTGCAGGTGGAGTATGCCCAGGAGGCCGTT
CGCAAGGGATCGACTGCGGTCGGAGTTCGCGGCGCCAACTGCGTTGTGCT
TGGCGTGGAGAAGAAGTCGGTGGCCCAACTGCAGGAGGATCGAAAGGTGC
GCAAGATTTGCATGCTCGACAACCACGTTGTAATGGCTTTTGCCGGTCTC
ACGGCCGACGCTCGCATCATGATCAATCGTGCCCAGGTGGAGTGCCAGAG
CCATCGTCTCAATGTCGAGGATCCCGTGACCCTCGAGTACATAACCAGAT
TCATTGCCCAGCTGAAACAAAAATACACGCAGAGCAATGGCCGCCGTCCC
TTCGGTATTTCCTGCCTTATTGGCGGCTTCGATGCCGATGGCTCTGCGCA
TCTGTTCCAGACTGAGCCGTCGGGCATTTTCTACGAGTATAAGGCTAACG
CCACCGGGCGATCGGCAAAGGTTGTGCGCGAGTTCTTCGAGAAGTCCTAC
CGCGAGGAGGAGGTGGCCAACGAGCACGGAGCCGTCAAACTGGCCATCCG
TGCGCTGCTCGAGGTGGCGCAGTCAGGCCAGAACAATCTGGAGGTGGCCA
TCATGGAGAACGGCAAGCCACTGAAAATGCTGGACACCGATGTCATTACC
GATTATGTTAAGATCATCGAGAAGGAGAAGGAGGAGGAGCTCGAGAAGAA
GAAACAGAAAAAGTAAAAGCTTTCTAGACC
BS11890.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:09:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3422-PA | 750 | Pros28.1-RA | 1..750 | 17..766 | 3750 | 100 | Plus |
CG4569-PA | 759 | Pros28.1B-RA | 40..83 | 56..99 | 170 | 95.4 | Plus |
CG4569-PA | 759 | Pros28.1B-RA | 319..374 | 335..390 | 155 | 91 | Plus |
CG4569-PA | 759 | Pros28.1B-RA | 164..212 | 180..228 | 145 | 91.8 | Plus |
CG17268-PA | 750 | Pros28.1A-RA | 310..392 | 326..408 | 140 | 86.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:43:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha4-RA | 1176 | CG3422-RA | 149..898 | 17..766 | 3750 | 100 | Plus |
Prosalpha4T1-RA | 891 | CG17268-RA | 57..726 | 17..686 | 1175 | 78.9 | Plus |
Prosalpha4T2-RB | 1254 | CG4569-RB | 103..581 | 29..507 | 880 | 79.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:43:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16276890..16277309 | 347..766 | 2100 | 100 | Plus |
3R | 32079331 | 3R | 20748349..20749018 | 686..17 | 1175 | 78.4 | Minus |
X | 23542271 | X | 16276596..16276826 | 118..348 | 1155 | 100 | Plus |
X | 23542271 | X | 16276418..16276521 | 17..120 | 520 | 100 | Plus |
2R | 25286936 | 2R | 24501794..24501988 | 346..152 | 390 | 80 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:43:52 has no hits.
BS11890.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:01 Download gff for
BS11890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3422-PA | 1..750 | 17..766 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:33:59 Download gff for
BS11890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha4-RA | 142..898 | 9..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:10:52 Download gff for
BS11890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha4-RA | 142..898 | 9..766 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:10:52 Download gff for
BS11890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16276418..16276519 | 17..118 | 100 | -> | Plus |
X | 16276597..16276826 | 119..348 | 100 | -> | Plus |
X | 16276892..16277309 | 349..766 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:33:59 Download gff for
BS11890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16170451..16170552 | 17..118 | 100 | -> | Plus |
arm_X | 16170630..16170859 | 119..348 | 100 | -> | Plus |
arm_X | 16170925..16171342 | 349..766 | 100 | | Plus |
BS11890.complete Sequence
782 bp assembled on 2007-10-17
GenBank Submission: FJ638838
> BS11890.complete
GAAGTTATCAGTCGACATGTCCTCACGCTACGATCGTGCTGTAACCATAT
TCTCTCCCGACGGTCACCTCCTGCAGGTGGAGTATGCCCAGGAGGCCGTT
CGCAAGGGATCGACTGCGGTCGGAGTTCGCGGCGCCAACTGCGTTGTGCT
TGGCGTGGAGAAGAAGTCGGTGGCCCAACTGCAGGAGGATCGAAAGGTGC
GCAAGATTTGCATGCTCGACAACCACGTTGTAATGGCTTTTGCCGGTCTC
ACGGCCGACGCTCGCATCATGATCAATCGTGCCCAGGTGGAGTGCCAGAG
CCATCGTCTCAATGTCGAGGATCCCGTGACCCTCGAGTACATAACCAGAT
TCATTGCCCAGCTGAAACAAAAATACACGCAGAGCAATGGCCGCCGTCCC
TTCGGTATTTCCTGCCTTATTGGCGGCTTCGATGCCGATGGCTCTGCGCA
TCTGTTCCAGACTGAGCCGTCGGGCATTTTCTACGAGTATAAGGCTAACG
CCACCGGGCGATCGGCAAAGGTTGTGCGCGAGTTCTTCGAGAAGTCCTAC
CGCGAGGAGGAGGTGGCCAACGAGCACGGAGCCGTCAAACTGGCCATCCG
TGCGCTGCTCGAGGTGGCGCAGTCAGGCCAGAACAATCTGGAGGTGGCCA
TCATGGAGAACGGCAAGCCACTGAAAATGCTGGACACCGATGTCATTACC
GATTATGTTAAGATCATCGAGAAGGAGAAGGAGGAGGAGCTCGAGAAGAA
GAAACAGAAAAAGTAAAAGCTTTCTAGACCAT
BS11890.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:40:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha4-RA | 750 | CG3422-PA | 1..750 | 17..766 | 3750 | 100 | Plus |
Prosalpha4T1-RA | 750 | CG17268-PA | 1..670 | 17..686 | 1175 | 78.4 | Plus |
Prosalpha4T2-RB | 759 | CG4569-PB | 13..491 | 29..507 | 880 | 78.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:40:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha4-RA | 1176 | CG3422-RA | 149..898 | 17..766 | 3750 | 100 | Plus |
Prosalpha4T1-RA | 891 | CG17268-RA | 57..726 | 17..686 | 1175 | 78.4 | Plus |
Prosalpha4T2-RB | 1254 | CG4569-RB | 103..581 | 29..507 | 880 | 78.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:40:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16276890..16277309 | 347..766 | 2100 | 100 | Plus |
3R | 32079331 | 3R | 20748349..20749018 | 686..17 | 1175 | 78.4 | Minus |
X | 23542271 | X | 16276596..16276826 | 118..348 | 1155 | 100 | Plus |
X | 23542271 | X | 16276418..16276521 | 17..120 | 520 | 100 | Plus |
2R | 25286936 | 2R | 24501794..24501988 | 346..152 | 390 | 80 | Minus |
2R | 25286936 | 2R | 24501453..24501614 | 507..346 | 330 | 80.2 | Minus |
2R | 25286936 | 2R | 24502084..24502175 | 120..29 | 250 | 84.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:40:30 has no hits.
BS11890.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:14:34 Download gff for
BS11890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pros28.1-RA | 1..750 | 17..766 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:52:50 Download gff for
BS11890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pros28.1-RA | 140..896 | 9..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:34 Download gff for
BS11890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha4-RA | 149..883 | 17..751 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:30:04 Download gff for
BS11890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pros28.1-RA | 147..881 | 17..751 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:35 Download gff for
BS11890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha4-RA | 149..883 | 17..751 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:35 Download gff for
BS11890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16276418..16276519 | 17..118 | 100 | -> | Plus |
X | 16276597..16276826 | 119..348 | 100 | -> | Plus |
X | 16276892..16277294 | 349..751 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:34 Download gff for
BS11890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16170451..16170552 | 17..118 | 100 | -> | Plus |
arm_X | 16170630..16170859 | 119..348 | 100 | -> | Plus |
arm_X | 16170925..16171327 | 349..751 | 100 | | Plus |
BS11890.pep Sequence
Translation from 16 to 765
> BS11890.pep
MSSRYDRAVTIFSPDGHLLQVEYAQEAVRKGSTAVGVRGANCVVLGVEKK
SVAQLQEDRKVRKICMLDNHVVMAFAGLTADARIMINRAQVECQSHRLNV
EDPVTLEYITRFIAQLKQKYTQSNGRRPFGISCLIGGFDADGSAHLFQTE
PSGIFYEYKANATGRSAKVVREFFEKSYREEEVANEHGAVKLAIRALLEV
AQSGQNNLEVAIMENGKPLKMLDTDVITDYVKIIEKEKEEELEKKKQKK*
BS11890.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:32:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha4-PA | 249 | CG3422-PA | 1..249 | 1..249 | 1257 | 100 | Plus |
Prosalpha4T1-PA | 249 | CG17268-PA | 1..249 | 1..249 | 958 | 75.1 | Plus |
Prosalpha4T2-PB | 252 | CG4569-PB | 1..250 | 1..249 | 809 | 60.4 | Plus |
Prosalpha4T2-PA | 252 | CG4569-PA | 1..250 | 1..249 | 809 | 60.4 | Plus |
Prosalpha2-PA | 234 | CG5266-PA | 3..233 | 2..234 | 368 | 36.4 | Plus |