Clone BS11890 Report

Search the DGRC for BS11890

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:118
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptProsalpha4-RA
Protein status:BS11890.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11890.3prime Sequence

725 bp (724 high quality bases) assembled on 2006-06-16

> BS11890.3prime
ATGGTCTAGAAAGCTTTTACTTTTTCTGTTTCTTCTTCTCGAGCTCCTCC
TCCTTCTCCTTCTCGATGATCTTAACATAATCGGTAATGACATCGGTGTC
CAGCATTTTCAGTGGCTTGCCGTTCTCCATGATGGCCACCTCCAGATTGT
TCTGGCCTGACTGCGCCACCTCGAGCAGCGCACGGATGGCCAGTTTGACG
GCTCCGTGCTCGTTGGCCACCTCCTCCTCGCGGTAGGACTTCTCGAAGAA
CTCGCGCACAACCTTTGCCGATCGCCCGGTGGCGTTAGCCTTATACTCGT
AGAAAATGCCCGACGGCTCAGTCTGGAACAGATGCGCAGAGCCATCGGCA
TCGAAGCCGCCAATAAGGCAGGAAATACCGAAGGGACGGCGGCCATTGCT
CTGCGTGTATTTTTGTTTCAGCTGGGCAATGAATCTGGTTATGTACTCGA
GGGTCACGGGATCCTCGACATTGAGACGATGGCTCTGGCACTCCACCTGG
GCACGATTGATCATGATGCGAGCGTCGGCCGTGAGACCGGCAAAAGCCAT
TACAACGTGGTTGTCGAGCATGCAAATCTTGCGCACCTTTCGATCCTCCT
GCAGTTGGGCCACCGACTTCTTCTCCACGCCAAGCACAACGCAGTTGGCG
CCGCGAACTCCGACCGCAGTCGATCCCTTGCGAACGGCCTCCTGGGCATA
CTCCACCTGCAGGAGGTGACCGTCG

BS11890.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:09:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG3422-PA 750 Pros28.1-RA 42..750 725..17 3545 100 Minus
CG4569-PA 759 Pros28.1B-RA 42..83 725..684 160 95.2 Minus
CG4569-PA 759 Pros28.1B-RA 319..374 448..393 155 91 Minus
CG4569-PA 759 Pros28.1B-RA 164..212 603..555 145 91.8 Minus
CG17268-PA 750 Pros28.1A-RA 310..392 457..375 140 86.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:00:23
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha4-RA 1176 CG3422-RA 190..898 725..17 3545 100 Minus
Prosalpha4T1-RA 891 CG17268-RA 105..726 718..97 1040 78.4 Minus
Prosalpha4T2-RB 1254 CG4569-RB 132..581 725..276 825 79.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16276890..16277309 436..17 2100 100 Minus
X 23542271 X 16276596..16276826 665..435 1155 100 Minus
3R 32079331 3R 20748349..20748970 97..718 1040 77.8 Plus
2R 25286936 2R 24501794..24501988 437..631 390 80 Plus
X 23542271 X 16276459..16276521 725..663 315 100 Minus
Blast to na_te.dros performed on 2015-02-05 02:00:19 has no hits.

BS11890.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:00 Download gff for BS11890.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3422-PA 42..750 17..725 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:06:45 Download gff for BS11890.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha4-RA 190..898 17..725 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:01:29 Download gff for BS11890.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha4-RA 190..898 17..725 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:01:29 Download gff for BS11890.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16276459..16276519 665..725 100 -> Minus
X 16276597..16276826 435..664 100 -> Minus
X 16276892..16277309 17..434 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:06:45 Download gff for BS11890.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16170492..16170552 665..725 100 -> Minus
arm_X 16170630..16170859 435..664 100 -> Minus
arm_X 16170925..16171342 17..434 100   Minus

BS11890.5prime Sequence

780 bp (731 high quality bases) assembled on 2006-06-16

> BS11890.5prime
GAAGTTATCAGTCGACATGTCCTCACGCTACGATCGTGCTGTAACCATAT
TCTCTCCCGACGGTCACCTCCTGCAGGTGGAGTATGCCCAGGAGGCCGTT
CGCAAGGGATCGACTGCGGTCGGAGTTCGCGGCGCCAACTGCGTTGTGCT
TGGCGTGGAGAAGAAGTCGGTGGCCCAACTGCAGGAGGATCGAAAGGTGC
GCAAGATTTGCATGCTCGACAACCACGTTGTAATGGCTTTTGCCGGTCTC
ACGGCCGACGCTCGCATCATGATCAATCGTGCCCAGGTGGAGTGCCAGAG
CCATCGTCTCAATGTCGAGGATCCCGTGACCCTCGAGTACATAACCAGAT
TCATTGCCCAGCTGAAACAAAAATACACGCAGAGCAATGGCCGCCGTCCC
TTCGGTATTTCCTGCCTTATTGGCGGCTTCGATGCCGATGGCTCTGCGCA
TCTGTTCCAGACTGAGCCGTCGGGCATTTTCTACGAGTATAAGGCTAACG
CCACCGGGCGATCGGCAAAGGTTGTGCGCGAGTTCTTCGAGAAGTCCTAC
CGCGAGGAGGAGGTGGCCAACGAGCACGGAGCCGTCAAACTGGCCATCCG
TGCGCTGCTCGAGGTGGCGCAGTCAGGCCAGAACAATCTGGAGGTGGCCA
TCATGGAGAACGGCAAGCCACTGAAAATGCTGGACACCGATGTCATTACC
GATTATGTTAAGATCATCGAGAAGGAGAAGGAGGAGGAGCTCGAGAAGAA
GAAACAGAAAAAGTAAAAGCTTTCTAGACC

BS11890.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:09:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3422-PA 750 Pros28.1-RA 1..750 17..766 3750 100 Plus
CG4569-PA 759 Pros28.1B-RA 40..83 56..99 170 95.4 Plus
CG4569-PA 759 Pros28.1B-RA 319..374 335..390 155 91 Plus
CG4569-PA 759 Pros28.1B-RA 164..212 180..228 145 91.8 Plus
CG17268-PA 750 Pros28.1A-RA 310..392 326..408 140 86.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha4-RA 1176 CG3422-RA 149..898 17..766 3750 100 Plus
Prosalpha4T1-RA 891 CG17268-RA 57..726 17..686 1175 78.9 Plus
Prosalpha4T2-RB 1254 CG4569-RB 103..581 29..507 880 79.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16276890..16277309 347..766 2100 100 Plus
3R 32079331 3R 20748349..20749018 686..17 1175 78.4 Minus
X 23542271 X 16276596..16276826 118..348 1155 100 Plus
X 23542271 X 16276418..16276521 17..120 520 100 Plus
2R 25286936 2R 24501794..24501988 346..152 390 80 Minus
Blast to na_te.dros performed on 2015-02-13 06:43:52 has no hits.

BS11890.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:01 Download gff for BS11890.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3422-PA 1..750 17..766 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:33:59 Download gff for BS11890.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha4-RA 142..898 9..766 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:10:52 Download gff for BS11890.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha4-RA 142..898 9..766 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:10:52 Download gff for BS11890.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16276418..16276519 17..118 100 -> Plus
X 16276597..16276826 119..348 100 -> Plus
X 16276892..16277309 349..766 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:33:59 Download gff for BS11890.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16170451..16170552 17..118 100 -> Plus
arm_X 16170630..16170859 119..348 100 -> Plus
arm_X 16170925..16171342 349..766 100   Plus

BS11890.complete Sequence

782 bp assembled on 2007-10-17

GenBank Submission: FJ638838

> BS11890.complete
GAAGTTATCAGTCGACATGTCCTCACGCTACGATCGTGCTGTAACCATAT
TCTCTCCCGACGGTCACCTCCTGCAGGTGGAGTATGCCCAGGAGGCCGTT
CGCAAGGGATCGACTGCGGTCGGAGTTCGCGGCGCCAACTGCGTTGTGCT
TGGCGTGGAGAAGAAGTCGGTGGCCCAACTGCAGGAGGATCGAAAGGTGC
GCAAGATTTGCATGCTCGACAACCACGTTGTAATGGCTTTTGCCGGTCTC
ACGGCCGACGCTCGCATCATGATCAATCGTGCCCAGGTGGAGTGCCAGAG
CCATCGTCTCAATGTCGAGGATCCCGTGACCCTCGAGTACATAACCAGAT
TCATTGCCCAGCTGAAACAAAAATACACGCAGAGCAATGGCCGCCGTCCC
TTCGGTATTTCCTGCCTTATTGGCGGCTTCGATGCCGATGGCTCTGCGCA
TCTGTTCCAGACTGAGCCGTCGGGCATTTTCTACGAGTATAAGGCTAACG
CCACCGGGCGATCGGCAAAGGTTGTGCGCGAGTTCTTCGAGAAGTCCTAC
CGCGAGGAGGAGGTGGCCAACGAGCACGGAGCCGTCAAACTGGCCATCCG
TGCGCTGCTCGAGGTGGCGCAGTCAGGCCAGAACAATCTGGAGGTGGCCA
TCATGGAGAACGGCAAGCCACTGAAAATGCTGGACACCGATGTCATTACC
GATTATGTTAAGATCATCGAGAAGGAGAAGGAGGAGGAGCTCGAGAAGAA
GAAACAGAAAAAGTAAAAGCTTTCTAGACCAT

BS11890.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha4-RA 750 CG3422-PA 1..750 17..766 3750 100 Plus
Prosalpha4T1-RA 750 CG17268-PA 1..670 17..686 1175 78.4 Plus
Prosalpha4T2-RB 759 CG4569-PB 13..491 29..507 880 78.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha4-RA 1176 CG3422-RA 149..898 17..766 3750 100 Plus
Prosalpha4T1-RA 891 CG17268-RA 57..726 17..686 1175 78.4 Plus
Prosalpha4T2-RB 1254 CG4569-RB 103..581 29..507 880 78.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:40:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16276890..16277309 347..766 2100 100 Plus
3R 32079331 3R 20748349..20749018 686..17 1175 78.4 Minus
X 23542271 X 16276596..16276826 118..348 1155 100 Plus
X 23542271 X 16276418..16276521 17..120 520 100 Plus
2R 25286936 2R 24501794..24501988 346..152 390 80 Minus
2R 25286936 2R 24501453..24501614 507..346 330 80.2 Minus
2R 25286936 2R 24502084..24502175 120..29 250 84.8 Minus
Blast to na_te.dros performed on 2014-11-27 15:40:30 has no hits.

BS11890.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:14:34 Download gff for BS11890.complete
Subject Subject Range Query Range Percent Splice Strand
Pros28.1-RA 1..750 17..766 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:52:50 Download gff for BS11890.complete
Subject Subject Range Query Range Percent Splice Strand
Pros28.1-RA 140..896 9..766 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:34 Download gff for BS11890.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha4-RA 149..883 17..751 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:30:04 Download gff for BS11890.complete
Subject Subject Range Query Range Percent Splice Strand
Pros28.1-RA 147..881 17..751 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:35 Download gff for BS11890.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha4-RA 149..883 17..751 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:35 Download gff for BS11890.complete
Subject Subject Range Query Range Percent Splice Strand
X 16276418..16276519 17..118 100 -> Plus
X 16276597..16276826 119..348 100 -> Plus
X 16276892..16277294 349..751 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:34 Download gff for BS11890.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16170451..16170552 17..118 100 -> Plus
arm_X 16170630..16170859 119..348 100 -> Plus
arm_X 16170925..16171327 349..751 100   Plus

BS11890.pep Sequence

Translation from 16 to 765

> BS11890.pep
MSSRYDRAVTIFSPDGHLLQVEYAQEAVRKGSTAVGVRGANCVVLGVEKK
SVAQLQEDRKVRKICMLDNHVVMAFAGLTADARIMINRAQVECQSHRLNV
EDPVTLEYITRFIAQLKQKYTQSNGRRPFGISCLIGGFDADGSAHLFQTE
PSGIFYEYKANATGRSAKVVREFFEKSYREEEVANEHGAVKLAIRALLEV
AQSGQNNLEVAIMENGKPLKMLDTDVITDYVKIIEKEKEEELEKKKQKK*

BS11890.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha4-PA 249 CG3422-PA 1..249 1..249 1257 100 Plus
Prosalpha4T1-PA 249 CG17268-PA 1..249 1..249 958 75.1 Plus
Prosalpha4T2-PB 252 CG4569-PB 1..250 1..249 809 60.4 Plus
Prosalpha4T2-PA 252 CG4569-PA 1..250 1..249 809 60.4 Plus
Prosalpha2-PA 234 CG5266-PA 3..233 2..234 368 36.4 Plus