Clone BS11891 Report

Search the DGRC for BS11891

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:118
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptCG7294-RA
Protein status:BS11891.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11891.3prime Sequence

414 bp (414 high quality bases) assembled on 2006-06-16

> BS11891.3prime
ATGGTCTAGAAAGCTTTTATCCGTAGAAACCACCACCGCTTGCGGAGGCG
GATGAAGAGGCGGATGAGGAGGCCGCTCCGCCACCACCACCAGCTGCAGA
GGCTGACGAAGATGCGGAGGCAGAGGCAGCACCACCGCCACCACCGCGTC
CACCGCCATGACGCCTGCCACCGCCGAATCCGCCGCCATAGGGATTACCG
AATCCCCCGCCGTATGGACCACCTCCGAAACCGCCGCCATAAGGACCACC
GCCAAAGCCGCCGCCATATGGACCACCGCCAAAGCCACCGCCGTAGGGTC
CGCCGCCGAATCCGCCACCAAATCCTGGTCGTCCGAATCCAAATTGCGGT
AGGGCCGAAACGGCGGCCACCAGAAGAGCGAGAACAATCAGAGTCTTCAT
GTCGACTGATAACT

BS11891.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG7294-PA 384 CG7294-RA 1..384 400..17 1920 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:54:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7294-RA 538 CG7294-RA 76..459 400..17 1920 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10688813..10689196 17..400 1920 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:54:32 has no hits.

BS11891.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:01 Download gff for BS11891.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7294-PA 1..384 17..400 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:08:00 Download gff for BS11891.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7294-RA 69..462 12..409 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:02 Download gff for BS11891.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7294-RA 69..462 12..409 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:02 Download gff for BS11891.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10688810..10689201 12..409 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:08:00 Download gff for BS11891.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10688810..10689201 12..409 98   Plus

BS11891.5prime Sequence

414 bp (414 high quality bases) assembled on 2006-06-16

> BS11891.5prime
GAAGTTATCAGTCGACATGAAGACTCTGATTGTTCTCGCTCTTCTGGTGG
CCGCCGTTTCGGCCCTACCGCAATTTGGATTCGGACGACCAGGATTTGGT
GGCGGATTCGGCGGCGGACCCTACGGCGGTGGCTTTGGCGGTGGTCCATA
TGGCGGCGGCTTTGGCGGTGGTCCTTATGGCGGCGGTTTCGGAGGTGGTC
CATACGGCGGGGGATTCGGTAATCCCTATGGCGGCGGATTCGGCGGTGGC
AGGCGTCATGGCGGTGGACGCGGTGGTGGCGGTGGTGCTGCCTCTGCCTC
CGCATCTTCGTCAGCCTCTGCAGCTGGTGGTGGTGGCGGAGCGGCCTCCT
CATCCGCCTCTTCATCCGCCTCCGCAAGCGGTGGTGGTTTCTACGGATAA
AAGCTTTCTAGACC

BS11891.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG7294-PA 384 CG7294-RA 1..384 17..400 1920 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7294-RA 538 CG7294-RA 76..459 17..400 1920 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10688813..10689196 400..17 1920 100 Minus
Blast to na_te.dros performed on 2015-01-30 17:41:09 has no hits.

BS11891.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:02 Download gff for BS11891.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7294-PA 1..384 17..400 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:04 Download gff for BS11891.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7294-RA 69..462 8..405 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:09 Download gff for BS11891.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7294-RA 69..462 8..405 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:09 Download gff for BS11891.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10688810..10689201 8..405 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:04 Download gff for BS11891.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10688810..10689201 8..405 98   Minus

BS11891.complete Sequence

416 bp assembled on 2006-11-01

GenBank Submission: FJ637013

> BS11891.complete
GAAGTTATCAGTCGACATGAAGACTCTGATTGTTCTCGCTCTTCTGGTGG
CCGCCGTTTCGGCCCTACCGCAATTTGGATTCGGACGACCAGGATTTGGT
GGCGGATTCGGCGGCGGACCCTACGGCGGTGGCTTTGGCGGTGGTCCATA
TGGCGGCGGCTTTGGCGGTGGTCCTTATGGCGGCGGTTTCGGAGGTGGTC
CATACGGCGGGGGATTCGGTAATCCCTATGGCGGCGGATTCGGCGGTGGC
AGGCGTCATGGCGGTGGACGCGGTGGTGGCGGTGGTGCTGCCTCTGCCTC
CGCATCTTCGTCAGCCTCTGCAGCTGGTGGTGGTGGCGGAGCGGCCTCCT
CATCCGCCTCTTCATCCGCCTCCGCAAGCGGTGGTGGTTTCTACGGATAA
AAGCTTTCTAGACCAT

BS11891.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG7294-RA 384 CG7294-PA 1..384 17..400 1920 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:41:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG7294-RA 538 CG7294-RA 76..459 17..400 1920 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:41:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10688813..10689196 400..17 1920 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:41:29 has no hits.

BS11891.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:43 Download gff for BS11891.complete
Subject Subject Range Query Range Percent Splice Strand
CG7294-RA 1..384 17..400 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:38 Download gff for BS11891.complete
Subject Subject Range Query Range Percent Splice Strand
CG7294-RA 67..460 8..405 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:33:10 Download gff for BS11891.complete
Subject Subject Range Query Range Percent Splice Strand
CG7294-RA 76..457 17..398 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:43 Download gff for BS11891.complete
Subject Subject Range Query Range Percent Splice Strand
CG7294-RA 67..460 8..405 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:24:47 Download gff for BS11891.complete
Subject Subject Range Query Range Percent Splice Strand
CG7294-RA 76..457 17..398 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:24:47 Download gff for BS11891.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10688815..10689196 17..398 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:33:10 Download gff for BS11891.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10688815..10689196 17..398 100   Minus

BS11891.pep Sequence

Translation from 16 to 399

> BS11891.pep
MKTLIVLALLVAAVSALPQFGFGRPGFGGGFGGGPYGGGFGGGPYGGGFG
GGPYGGGFGGGPYGGGFGNPYGGGFGGGRRHGGGRGGGGGAASASASSSA
SAAGGGGGAASSSASSSASASGGGFYG*

BS11891.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7294-PA 127 CG7294-PA 1..127 1..127 689 100 Plus
CG7296-PB 161 CG7296-PB 1..161 1..127 368 58.9 Plus
CG7296-PA 161 CG7296-PA 1..161 1..127 368 58.9 Plus
TwdlT-PA 286 CG5812-PA 1..126 1..124 261 47 Plus
CG17108-PA 342 CG17108-PA 219..342 21..127 255 50.4 Plus
TwdlT-PA 286 CG5812-PA 43..129 21..95 218 56.2 Plus
TwdlT-PA 286 CG5812-PA 51..127 21..108 212 56.8 Plus