Clone Sequence Records
BS11891.3prime Sequence
414 bp (414 high quality bases) assembled on 2006-06-16
> BS11891.3prime
ATGGTCTAGAAAGCTTTTATCCGTAGAAACCACCACCGCTTGCGGAGGCG
GATGAAGAGGCGGATGAGGAGGCCGCTCCGCCACCACCACCAGCTGCAGA
GGCTGACGAAGATGCGGAGGCAGAGGCAGCACCACCGCCACCACCGCGTC
CACCGCCATGACGCCTGCCACCGCCGAATCCGCCGCCATAGGGATTACCG
AATCCCCCGCCGTATGGACCACCTCCGAAACCGCCGCCATAAGGACCACC
GCCAAAGCCGCCGCCATATGGACCACCGCCAAAGCCACCGCCGTAGGGTC
CGCCGCCGAATCCGCCACCAAATCCTGGTCGTCCGAATCCAAATTGCGGT
AGGGCCGAAACGGCGGCCACCAGAAGAGCGAGAACAATCAGAGTCTTCAT
GTCGACTGATAACT
BS11891.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7294-PA | 384 | CG7294-RA | 1..384 | 400..17 | 1920 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:54:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7294-RA | 538 | CG7294-RA | 76..459 | 400..17 | 1920 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:54:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10688813..10689196 | 17..400 | 1920 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:54:32 has no hits.
BS11891.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:01 Download gff for
BS11891.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7294-PA | 1..384 | 17..400 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:08:00 Download gff for
BS11891.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7294-RA | 69..462 | 12..409 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:02 Download gff for
BS11891.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7294-RA | 69..462 | 12..409 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:02 Download gff for
BS11891.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10688810..10689201 | 12..409 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:08:00 Download gff for
BS11891.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10688810..10689201 | 12..409 | 98 | | Plus |
BS11891.5prime Sequence
414 bp (414 high quality bases) assembled on 2006-06-16
> BS11891.5prime
GAAGTTATCAGTCGACATGAAGACTCTGATTGTTCTCGCTCTTCTGGTGG
CCGCCGTTTCGGCCCTACCGCAATTTGGATTCGGACGACCAGGATTTGGT
GGCGGATTCGGCGGCGGACCCTACGGCGGTGGCTTTGGCGGTGGTCCATA
TGGCGGCGGCTTTGGCGGTGGTCCTTATGGCGGCGGTTTCGGAGGTGGTC
CATACGGCGGGGGATTCGGTAATCCCTATGGCGGCGGATTCGGCGGTGGC
AGGCGTCATGGCGGTGGACGCGGTGGTGGCGGTGGTGCTGCCTCTGCCTC
CGCATCTTCGTCAGCCTCTGCAGCTGGTGGTGGTGGCGGAGCGGCCTCCT
CATCCGCCTCTTCATCCGCCTCCGCAAGCGGTGGTGGTTTCTACGGATAA
AAGCTTTCTAGACC
BS11891.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7294-PA | 384 | CG7294-RA | 1..384 | 17..400 | 1920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:41:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7294-RA | 538 | CG7294-RA | 76..459 | 17..400 | 1920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:41:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10688813..10689196 | 400..17 | 1920 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:41:09 has no hits.
BS11891.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:02 Download gff for
BS11891.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7294-PA | 1..384 | 17..400 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:04 Download gff for
BS11891.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7294-RA | 69..462 | 8..405 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:09 Download gff for
BS11891.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7294-RA | 69..462 | 8..405 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:09 Download gff for
BS11891.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10688810..10689201 | 8..405 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:04 Download gff for
BS11891.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10688810..10689201 | 8..405 | 98 | | Minus |
BS11891.complete Sequence
416 bp assembled on 2006-11-01
GenBank Submission: FJ637013
> BS11891.complete
GAAGTTATCAGTCGACATGAAGACTCTGATTGTTCTCGCTCTTCTGGTGG
CCGCCGTTTCGGCCCTACCGCAATTTGGATTCGGACGACCAGGATTTGGT
GGCGGATTCGGCGGCGGACCCTACGGCGGTGGCTTTGGCGGTGGTCCATA
TGGCGGCGGCTTTGGCGGTGGTCCTTATGGCGGCGGTTTCGGAGGTGGTC
CATACGGCGGGGGATTCGGTAATCCCTATGGCGGCGGATTCGGCGGTGGC
AGGCGTCATGGCGGTGGACGCGGTGGTGGCGGTGGTGCTGCCTCTGCCTC
CGCATCTTCGTCAGCCTCTGCAGCTGGTGGTGGTGGCGGAGCGGCCTCCT
CATCCGCCTCTTCATCCGCCTCCGCAAGCGGTGGTGGTTTCTACGGATAA
AAGCTTTCTAGACCAT
BS11891.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:41:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7294-RA | 384 | CG7294-PA | 1..384 | 17..400 | 1920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:41:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7294-RA | 538 | CG7294-RA | 76..459 | 17..400 | 1920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:41:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10688813..10689196 | 400..17 | 1920 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:41:29 has no hits.
BS11891.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:43 Download gff for
BS11891.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7294-RA | 1..384 | 17..400 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:38 Download gff for
BS11891.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7294-RA | 67..460 | 8..405 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:33:10 Download gff for
BS11891.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7294-RA | 76..457 | 17..398 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:43 Download gff for
BS11891.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7294-RA | 67..460 | 8..405 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:24:47 Download gff for
BS11891.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7294-RA | 76..457 | 17..398 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:24:47 Download gff for
BS11891.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10688815..10689196 | 17..398 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:33:10 Download gff for
BS11891.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10688815..10689196 | 17..398 | 100 | | Minus |
BS11891.pep Sequence
Translation from 16 to 399
> BS11891.pep
MKTLIVLALLVAAVSALPQFGFGRPGFGGGFGGGPYGGGFGGGPYGGGFG
GGPYGGGFGGGPYGGGFGNPYGGGFGGGRRHGGGRGGGGGAASASASSSA
SAAGGGGGAASSSASSSASASGGGFYG*
BS11891.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:41:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7294-PA | 127 | CG7294-PA | 1..127 | 1..127 | 689 | 100 | Plus |
CG7296-PB | 161 | CG7296-PB | 1..161 | 1..127 | 368 | 58.9 | Plus |
CG7296-PA | 161 | CG7296-PA | 1..161 | 1..127 | 368 | 58.9 | Plus |
TwdlT-PA | 286 | CG5812-PA | 1..126 | 1..124 | 261 | 47 | Plus |
CG17108-PA | 342 | CG17108-PA | 219..342 | 21..127 | 255 | 50.4 | Plus |
TwdlT-PA | 286 | CG5812-PA | 43..129 | 21..95 | 218 | 56.2 | Plus |
TwdlT-PA | 286 | CG5812-PA | 51..127 | 21..108 | 212 | 56.8 | Plus |