Clone BS11893 Report

Search the DGRC for BS11893

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:118
Well:93
Vector:pDNR-Dual
Associated Gene/Transcriptbou-RA
Protein status:BS11893.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11893.3prime Sequence

480 bp (480 high quality bases) assembled on 2006-06-16

> BS11893.3prime
ATGGTCTAGAAAGCTTTCAGTGCCGTAAGAGCCATGTGAGAGTGAGGAGG
GCCGCTGCCACGCCCCATTCCAGTTCCAGCCTTCCAGCGGCATTGCAACC
GTCCGTATCACAAGTGTAAATGCAGCTGCGATAGTCCATGCGATCGCCCT
TGTTTCGCACATAGTCACAATAGTTGCCCATGTCCTTCGAACTGCAGAAC
CTCTTCGCCCCGATTCCACCCTCAAAACGACCCACGTGCTTCACACAGAA
CTGGGCGCCATGGACACTGGAACAATTTTGGGGTTGAATGTCCGGTATGT
CGTATCGCTCGAACCACTCGCCGCACTGGAACGGATGCTCCGTATCGCTC
GTGTCGCACACGTAGCACTCGATCCCCGATACCATTACCATTTGCAGGCT
CATCAGGAGAACGACGAGAGCAAGGCTTGAAAGCCAGCCAATGTGGGCGT
GCTTGGGCGGCCACATGTCGACTGATAACT

BS11893.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG14430-PA 450 CG14430-RA 1..450 466..17 2250 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:26:37
Subject Length Description Subject Range Query Range Score Percent Strand
bou-RA 703 CG14430-RA 93..547 467..13 2260 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:26:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6986578..6987032 467..13 2260 99.8 Minus
Blast to na_te.dros performed on 2015-02-11 17:26:33 has no hits.

BS11893.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:02 Download gff for BS11893.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14430-PA 1..450 17..466 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:37 Download gff for BS11893.3prime
Subject Subject Range Query Range Percent Splice Strand
bou-RA 87..546 13..472 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:54 Download gff for BS11893.3prime
Subject Subject Range Query Range Percent Splice Strand
bou-RA 88..547 13..472 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:54 Download gff for BS11893.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6986573..6987032 13..472 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:37 Download gff for BS11893.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6880606..6881065 13..472 99   Minus

BS11893.5prime Sequence

480 bp (480 high quality bases) assembled on 2006-06-16

> BS11893.5prime
GAAGTTATCAGTCGACATGTGGCCGCCCAAGCACGCCCACATTGGCTGGC
TTTCAAGCCTTGCTCTCGTCGTTCTCCTGATGAGCCTGCAAATGGTAATG
GTATCGGGGATCGAGTGCTACGTGTGCGACACGAGCGATACGGAGCATCC
GTTCCAGTGCGGCGAGTGGTTCGAGCGATACGACATACCGGACATTCAAC
CCCAAAATTGTTCCAGTGTCCATGGCGCCCAGTTCTGTGTGAAGCACGTG
GGTCGTTTTGAGGGTGGAATCGGGGCGAAGAGGTTCTGCAGTTCGAAGGA
CATGGGCAACTATTGTGACTATGTGCGAAACAAGGGCGATCGCATGGACT
ATCGCAGCTGCATTTACACTTGTGATACGGACGGTTGCAATGCCGCTGGA
AGGCTGGAACTGGAATGGGGCGTGGCAGCGGCCCTCCTCACTCTCACATG
GCTCTTACGGCACTGAAAGCTTTCTAGACC

BS11893.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG14430-PA 450 CG14430-RA 1..450 17..466 2250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
bou-RA 703 CG14430-RA 93..547 16..470 2260 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6986578..6987032 16..470 2260 99.8 Plus
Blast to na_te.dros performed on 2015-02-10 16:32:34 has no hits.

BS11893.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:02 Download gff for BS11893.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14430-PA 1..450 17..466 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:17:38 Download gff for BS11893.5prime
Subject Subject Range Query Range Percent Splice Strand
bou-RA 87..546 11..470 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:46 Download gff for BS11893.5prime
Subject Subject Range Query Range Percent Splice Strand
bou-RA 88..547 11..470 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:46 Download gff for BS11893.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6986573..6987032 11..470 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:17:38 Download gff for BS11893.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6880606..6881065 11..470 99   Plus

BS11893.complete Sequence

482 bp assembled on 2006-11-01

GenBank Submission: FJ637014

> BS11893.complete
GAAGTTATCAGTCGACATGTGGCCGCCCAAGCACGCCCACATTGGCTGGC
TTTCAAGCCTTGCTCTCGTCGTTCTCCTGATGAGCCTGCAAATGGTAATG
GTATCGGGGATCGAGTGCTACGTGTGCGACACGAGCGATACGGAGCATCC
GTTCCAGTGCGGCGAGTGGTTCGAGCGATACGACATACCGGACATTCAAC
CCCAAAATTGTTCCAGTGTCCATGGCGCCCAGTTCTGTGTGAAGCACGTG
GGTCGTTTTGAGGGTGGAATCGGGGCGAAGAGGTTCTGCAGTTCGAAGGA
CATGGGCAACTATTGTGACTATGTGCGAAACAAGGGCGATCGCATGGACT
ATCGCAGCTGCATTTACACTTGTGATACGGACGGTTGCAATGCCGCTGGA
AGGCTGGAACTGGAATGGGGCGTGGCAGCGGCCCTCCTCACTCTCACATG
GCTCTTACGGCACTGAAAGCTTTCTAGACCAT

BS11893.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:33:14
Subject Length Description Subject Range Query Range Score Percent Strand
bou-RA 450 CG14430-PA 1..450 17..466 2250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:33:16
Subject Length Description Subject Range Query Range Score Percent Strand
bou-RA 703 CG14430-RA 93..547 16..470 2260 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:33:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6986578..6987032 16..470 2260 99.8 Plus
Blast to na_te.dros performed on 2014-11-27 08:33:13 has no hits.

BS11893.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:44:18 Download gff for BS11893.complete
Subject Subject Range Query Range Percent Splice Strand
CG14430-RA 1..450 17..466 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:11:04 Download gff for BS11893.complete
Subject Subject Range Query Range Percent Splice Strand
CG14430-RA 84..543 11..470 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:40 Download gff for BS11893.complete
Subject Subject Range Query Range Percent Splice Strand
bou-RA 93..541 17..465 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:44:18 Download gff for BS11893.complete
Subject Subject Range Query Range Percent Splice Strand
CG14430-RA 84..543 11..470 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:21:48 Download gff for BS11893.complete
Subject Subject Range Query Range Percent Splice Strand
bou-RA 94..542 17..465 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:21:48 Download gff for BS11893.complete
Subject Subject Range Query Range Percent Splice Strand
X 6986579..6987027 17..465 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:40 Download gff for BS11893.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6880612..6881060 17..465 100   Plus

BS11893.pep Sequence

Translation from 16 to 465

> BS11893.pep
MWPPKHAHIGWLSSLALVVLLMSLQMVMVSGIECYVCDTSDTEHPFQCGE
WFERYDIPDIQPQNCSSVHGAQFCVKHVGRFEGGIGAKRFCSSKDMGNYC
DYVRNKGDRMDYRSCIYTCDTDGCNAAGRLELEWGVAAALLTLTWLLRH*

BS11893.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:39:51
Subject Length Description Subject Range Query Range Score Percent Strand
bou-PA 149 CG14430-PA 1..149 1..149 839 100 Plus