Clone Sequence Records
BS11894.3prime Sequence
497 bp (497 high quality bases) assembled on 2006-06-16
> BS11894.3prime
ATGGTCTAGAAAGCTCTAAACGGCGAACGGCTGATCCTTGCCATCCTCGT
GGTACTTGATGTATGTTTCCCCGTGGGTGAAGTCCTTGGTTCCCTCCAGG
CGACCGCGGGGCGGTGCCTTCTCGTAGTCGAAGGCCTTCTCTGACTTGCC
GAACAGCTGGTTGGCCATCTCGATGTCCTCGCGGTAATTGCCCACGACCA
CCTTCTTGCCAGTGAGCGGGTCCGTTATGTCACCCAGCGGATAGACCACT
TTTTCCACGTTGTGCGTGATGAGGCGGGTGAGGCGCTCTGGCAGTTCCCG
TATCAGGACCACGTCCCCGGTCTTGCACACCTTCTGCGGATCGTGGGCGA
AGTAGAACTCGTCCTTCTTAAAGTACATATTCAGGTTCTTGTCCAGCTCC
ATTCGGCGAATGCGGATCTTGGAGGCGTTCTGCTTGATGCAGGGCATGCA
CTGGCCCATTAGTAGGAGTCCTCGCCTCGACATGTCGACTGATAACT
BS11894.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:09:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4326-PA | 468 | mRpS17-RA | 1..468 | 483..16 | 2340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:55:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS17-RA | 713 | CG4326-RA | 75..546 | 483..12 | 2360 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:54:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24173832..24174196 | 12..376 | 1825 | 100 | Plus |
| 2R | 25286936 | 2R | 24174260..24174367 | 376..483 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:55:04 has no hits.
BS11894.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:03 Download gff for
BS11894.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4326-PA | 1..468 | 16..483 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:17:35 Download gff for
BS11894.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS17-RA | 67..551 | 3..495 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:58 Download gff for
BS11894.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS17-RA | 67..551 | 3..495 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:58 Download gff for
BS11894.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24173827..24174195 | 3..375 | 98 | <- | Plus |
| 2R | 24174260..24174375 | 376..495 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:17:35 Download gff for
BS11894.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20061350..20061718 | 3..375 | 98 | <- | Plus |
| arm_2R | 20061783..20061898 | 376..495 | 95 | | Plus |
BS11894.5prime Sequence
497 bp (497 high quality bases) assembled on 2006-06-16
> BS11894.5prime
GAAGTTATCAGTCGACATGTCGAGGCGAGGACTCCTACTAATGGGCCAGT
GCATGCCCTGCATCAAGCAGAACGCCTCCAAGATCCGCATTCGCCGAATG
GAGCTGGACAAGAACCTGAATATGTACTTTAAGAAGGACGAGTTCTACTT
CGCCCACGATCCGCAGAAGGTGTGCAAGACCGGGGACGTGGTCCTGATAC
GGGAACTGCCAGAGCGCCTCACCCGCCTCATCACGCACAACGTGGAAAAA
GTGGTCTATCCGCTGGGTGACATAACGGACCCGCTCACTGGCAAGAAGGT
GGTCGTGGGCAATTACCGCGAGGACATCGAGATGGCCAACCAGCTGTTCG
GCAAGTCAGAGAAGGCCTTCGACTACGAGAAGGCACCGCCCCGCGGTCGC
CTGGAGGGAACCAAGGACTTCACCCACGGGGAAACATACATCAAGTACCA
CGAGGATGGCAAGGATCAGCCGTTCGCCGTTTAGAGCTTTCTAGACC
BS11894.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:09:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4326-PA | 468 | mRpS17-RA | 1..468 | 17..484 | 2340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:00:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS17-RA | 713 | CG4326-RA | 75..546 | 17..488 | 2360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:00:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24173832..24174196 | 488..124 | 1825 | 100 | Minus |
| 2R | 25286936 | 2R | 24174260..24174367 | 124..17 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-05 02:00:39 has no hits.
BS11894.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:03 Download gff for
BS11894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4326-PA | 1..468 | 17..484 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:06:47 Download gff for
BS11894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS17-RA | 67..551 | 5..497 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:01:32 Download gff for
BS11894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS17-RA | 67..551 | 5..497 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:01:32 Download gff for
BS11894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24173827..24174195 | 125..497 | 98 | <- | Minus |
| 2R | 24174260..24174375 | 5..124 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:06:47 Download gff for
BS11894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20061350..20061718 | 125..497 | 98 | <- | Minus |
| arm_2R | 20061783..20061898 | 5..124 | 95 | | Minus |
BS11894.complete Sequence
499 bp assembled on 2008-08-15
GenBank Submission: FJ637015
> BS11894.complete
GAAGTTATCAGTCGACATGTCGAGGCGAGGACTCCTACTAATGGGCCAGT
GCATGCCCTGCATCAAGCAGAACGCCTCCAAGATCCGCATTCGCCGAATG
GAGCTGGACAAGAACCTGAATATGTACTTTAAGAAGGACGAGTTCTACTT
CGCCCACGATCCGCAGAAGGTGTGCAAGACCGGGGACGTGGTCCTGATAC
GGGAACTGCCAGAGCGCCTCACCCGCCTCATCACGCACAACGTGGAAAAA
GTGGTCTATCCGCTGGGTGACATAACGGACCCGCTCACTGGCAAGAAGGT
GGTCGTGGGCAATTACCGCGAGGACATCGAGATGGCCAACCAGCTGTTCG
GCAAGTCAGAGAAGGCCTTCGACTACGAGAAGGCACCGCCCCGCGGTCGC
CTGGAGGGAACCAAGGACTTCACCCACGGGGAAACATACATCAAGTACCA
CGAGGATGGCAAGGATCAGCCGTTCGCCGTTTAGAGCTTTCTAGACCAT
BS11894.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:45:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS17-RA | 468 | CG4326-PA | 1..468 | 17..484 | 2340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:45:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS17-RA | 713 | CG4326-RA | 75..546 | 17..488 | 2360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:45:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24173832..24174196 | 488..124 | 1825 | 100 | Minus |
| 2R | 25286936 | 2R | 24174260..24174367 | 124..17 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:45:31 has no hits.
BS11894.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:55:06 Download gff for
BS11894.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS17-RA | 61..545 | 5..497 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:04 Download gff for
BS11894.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS17-RA | 75..540 | 17..482 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:00:54 Download gff for
BS11894.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS17-RA | 71..536 | 17..482 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:16 Download gff for
BS11894.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS17-RA | 75..540 | 17..482 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:16 Download gff for
BS11894.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24173838..24174195 | 125..482 | 100 | <- | Minus |
| 2R | 24174260..24174367 | 17..124 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:04 Download gff for
BS11894.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20061361..20061718 | 125..482 | 100 | <- | Minus |
| arm_2R | 20061783..20061890 | 17..124 | 100 | | Minus |
BS11894.pep Sequence
Translation from 16 to 483
> BS11894.pep
MSRRGLLLMGQCMPCIKQNASKIRIRRMELDKNLNMYFKKDEFYFAHDPQ
KVCKTGDVVLIRELPERLTRLITHNVEKVVYPLGDITDPLTGKKVVVGNY
REDIEMANQLFGKSEKAFDYEKAPPRGRLEGTKDFTHGETYIKYHEDGKD
QPFAV*
BS11894.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:22:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS17-PA | 155 | CG4326-PA | 1..155 | 1..155 | 824 | 100 | Plus |
