Clone BS11901 Report

Search the DGRC for BS11901

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:119
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptCG14879-RB
Protein status:BS11901.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11901.3prime Sequence

477 bp (477 high quality bases) assembled on 2006-06-16

> BS11901.3prime
ATGGTCTAGAAAGCTTTCAGTTGTAGCTTAGGGCAAACTGGTTGACCTTC
TGTACATCGCCCCACACCTGTACAGCCTGGATGTCGGACAGGGAGAAGAG
AGTCTCGTACTCGGTTATGAAATTGTGGCCCGAATCCCTACCCTGGTACA
CCCGCATCATTGAATTTGCGTAGTCGAAGGCGAACTCAAGGCAAAAGGAG
GACTCGTCGAAGATGTTCAGGTACTTCTCCTGGTGCAGGCTGCTCCACTC
GCCGTTCCGCTTATAATTCTCGATAATCGTCTGTGTGGGAATCACCACCT
TGAAGTGGTATGTGATGTTGTCCGTGCAGTCCGGACTGTTGACAAAGTTC
ACCGAGAATTGCTGGGGATCCTGGAGCAGGTTGCCGCTGATGGACAGCCG
GGTTACTCGATCCGAGGTACTGGCATTGGTGGGCAGCACGGCAAAGAACT
TCACATCAGGCATGTCGACTGATAACT

BS11901.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG14879-PB 447 CG14879-RB 1..447 463..17 2235 100 Minus
CG14879-PA 540 CG14879-RA 1..259 463..205 1295 100 Minus
CG14879-PA 540 CG14879-RA 352..540 205..17 945 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:03:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG14879-RB 1749 CG14879-RB 343..789 463..17 2235 100 Minus
CG14879-RD 1093 CG14879-RD 343..601 463..205 1295 100 Minus
CG14879-RC 1041 CG14879-RC 343..601 463..205 1295 100 Minus
CG14879-RD 1093 CG14879-RD 694..882 205..17 945 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:03:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16347093..16347281 17..205 945 100 Plus
3R 32079331 3R 16347374..16347528 205..359 775 100 Plus
3R 32079331 3R 16348781..16348884 360..463 520 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:03:29 has no hits.

BS11901.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:04 Download gff for BS11901.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14879-PB 1..447 17..463 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:30 Download gff for BS11901.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14879-RB 343..789 17..463 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:16:49 Download gff for BS11901.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14879-RB 343..789 17..463 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:16:49 Download gff for BS11901.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16347093..16347280 17..204 100 <- Plus
3R 16347374..16347528 205..359 100 <- Plus
3R 16348781..16348884 360..463 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:30 Download gff for BS11901.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12172815..12173002 17..204 100 <- Plus
arm_3R 12173096..12173250 205..359 100 <- Plus
arm_3R 12174503..12174606 360..463 100   Plus

BS11901.5prime Sequence

477 bp (477 high quality bases) assembled on 2006-06-16

> BS11901.5prime
GAAGTTATCAGTCGACATGCCTGATGTGAAGTTCTTTGCCGTGCTGCCCA
CCAATGCCAGTACCTCGGATCGAGTAACCCGGCTGTCCATCAGCGGCAAC
CTGCTCCAGGATCCCCAGCAATTCTCGGTGAACTTTGTCAACAGTCCGGA
CTGCACGGACAACATCACATACCACTTCAAGGTGGTGATTCCCACACAGA
CGATTATCGAGAATTATAAGCGGAACGGCGAGTGGAGCAGCCTGCACCAG
GAGAAGTACCTGAACATCTTCGACGAGTCCTCCTTTTGCCTTGAGTTCGC
CTTCGACTACGCAAATTCAATGATGCGGGTGTACCAGGGTAGGGATTCGG
GCCACAATTTCATAACCGAGTACGAGACTCTCTTCTCCCTGTCCGACATC
CAGGCTGTACAGGTGTGGGGCGATGTACAGAAGGTCAACCAGTTTGCCCT
AAGCTACAACTGAAAGCTTTCTAGACC

BS11901.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG14879-PB 447 CG14879-RB 1..447 17..463 2235 100 Plus
CG14879-PA 540 CG14879-RA 1..259 17..275 1295 100 Plus
CG14879-PA 540 CG14879-RA 352..540 275..463 945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:03:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG14879-RB 1749 CG14879-RB 343..789 17..463 2235 100 Plus
CG14879-RD 1093 CG14879-RD 343..601 17..275 1295 100 Plus
CG14879-RC 1041 CG14879-RC 343..601 17..275 1295 100 Plus
CG14879-RD 1093 CG14879-RD 694..882 275..463 945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:03:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16347093..16347281 463..275 945 100 Minus
3R 32079331 3R 16347374..16347528 275..121 775 100 Minus
3R 32079331 3R 16348781..16348884 120..17 520 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:03:45 has no hits.

BS11901.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:04 Download gff for BS11901.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14879-PB 1..447 17..463 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:35 Download gff for BS11901.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14879-RB 343..789 17..463 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:17:15 Download gff for BS11901.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14879-RB 343..789 17..463 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:17:15 Download gff for BS11901.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16347093..16347280 276..463 100 <- Minus
3R 16347374..16347528 121..275 100 <- Minus
3R 16348781..16348884 17..120 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:35 Download gff for BS11901.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12172815..12173002 276..463 100 <- Minus
arm_3R 12173096..12173250 121..275 100 <- Minus
arm_3R 12174503..12174606 17..120 100   Minus

BS11901.complete Sequence

479 bp assembled on 2006-11-01

GenBank Submission: FJ637017

> BS11901.complete
GAAGTTATCAGTCGACATGCCTGATGTGAAGTTCTTTGCCGTGCTGCCCA
CCAATGCCAGTACCTCGGATCGAGTAACCCGGCTGTCCATCAGCGGCAAC
CTGCTCCAGGATCCCCAGCAATTCTCGGTGAACTTTGTCAACAGTCCGGA
CTGCACGGACAACATCACATACCACTTCAAGGTGGTGATTCCCACACAGA
CGATTATCGAGAATTATAAGCGGAACGGCGAGTGGAGCAGCCTGCACCAG
GAGAAGTACCTGAACATCTTCGACGAGTCCTCCTTTTGCCTTGAGTTCGC
CTTCGACTACGCAAATTCAATGATGCGGGTGTACCAGGGTAGGGATTCGG
GCCACAATTTCATAACCGAGTACGAGACTCTCTTCTCCCTGTCCGACATC
CAGGCTGTACAGGTGTGGGGCGATGTACAGAAGGTCAACCAGTTTGCCCT
AAGCTACAACTGAAAGCTTTCTAGACCAT

BS11901.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:40:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG14879-RB 447 CG14879-PB 1..447 17..463 2235 100 Plus
CG14879-RD 540 CG14879-PD 1..259 17..275 1295 100 Plus
CG14879-RC 540 CG14879-PC 1..259 17..275 1295 100 Plus
CG14879-RD 540 CG14879-PD 352..540 275..463 945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:40:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG14879-RB 1749 CG14879-RB 343..789 17..463 2235 100 Plus
CG14879-RD 1093 CG14879-RD 343..601 17..275 1295 100 Plus
CG14879-RC 1041 CG14879-RC 343..601 17..275 1295 100 Plus
CG14879-RD 1093 CG14879-RD 694..882 275..463 945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16347093..16347281 463..275 945 100 Minus
3R 32079331 3R 16347374..16347528 275..121 775 100 Minus
3R 32079331 3R 16348781..16348884 120..17 520 100 Minus
Blast to na_te.dros performed on 2014-11-26 21:40:32 has no hits.

BS11901.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:34 Download gff for BS11901.complete
Subject Subject Range Query Range Percent Splice Strand
CG14879-RB 1..447 17..463 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:06 Download gff for BS11901.complete
Subject Subject Range Query Range Percent Splice Strand
CG14879-RB 341..787 17..463 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:33:21 Download gff for BS11901.complete
Subject Subject Range Query Range Percent Splice Strand
CG14879-RB 343..788 17..462 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:34 Download gff for BS11901.complete
Subject Subject Range Query Range Percent Splice Strand
CG14879-RB 341..787 17..463 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:39:18 Download gff for BS11901.complete
Subject Subject Range Query Range Percent Splice Strand
CG14879-RB 343..788 17..462 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:39:18 Download gff for BS11901.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16347094..16347280 276..462 100 <- Minus
3R 16347374..16347528 121..275 100 <- Minus
3R 16348781..16348884 17..120 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:33:21 Download gff for BS11901.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12172816..12173002 276..462 100 <- Minus
arm_3R 12173096..12173250 121..275 100 <- Minus
arm_3R 12174503..12174606 17..120 100   Minus

BS11901.pep Sequence

Translation from 16 to 462

> BS11901.pep
MPDVKFFAVLPTNASTSDRVTRLSISGNLLQDPQQFSVNFVNSPDCTDNI
TYHFKVVIPTQTIIENYKRNGEWSSLHQEKYLNIFDESSFCLEFAFDYAN
SMMRVYQGRDSGHNFITEYETLFSLSDIQAVQVWGDVQKVNQFALSYN*

BS11901.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG14879-PB 148 CG14879-PB 1..148 1..148 781 100 Plus
CG14879-PD 179 CG14879-PD 1..179 1..148 739 82.7 Plus
CG14879-PC 179 CG14879-PC 1..179 1..148 739 82.7 Plus
CG14879-PA 179 CG14879-PA 1..179 1..148 739 82.7 Plus