Clone Sequence Records
BS11901.3prime Sequence
477 bp (477 high quality bases) assembled on 2006-06-16
> BS11901.3prime
ATGGTCTAGAAAGCTTTCAGTTGTAGCTTAGGGCAAACTGGTTGACCTTC
TGTACATCGCCCCACACCTGTACAGCCTGGATGTCGGACAGGGAGAAGAG
AGTCTCGTACTCGGTTATGAAATTGTGGCCCGAATCCCTACCCTGGTACA
CCCGCATCATTGAATTTGCGTAGTCGAAGGCGAACTCAAGGCAAAAGGAG
GACTCGTCGAAGATGTTCAGGTACTTCTCCTGGTGCAGGCTGCTCCACTC
GCCGTTCCGCTTATAATTCTCGATAATCGTCTGTGTGGGAATCACCACCT
TGAAGTGGTATGTGATGTTGTCCGTGCAGTCCGGACTGTTGACAAAGTTC
ACCGAGAATTGCTGGGGATCCTGGAGCAGGTTGCCGCTGATGGACAGCCG
GGTTACTCGATCCGAGGTACTGGCATTGGTGGGCAGCACGGCAAAGAACT
TCACATCAGGCATGTCGACTGATAACT
BS11901.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14879-PB | 447 | CG14879-RB | 1..447 | 463..17 | 2235 | 100 | Minus |
CG14879-PA | 540 | CG14879-RA | 1..259 | 463..205 | 1295 | 100 | Minus |
CG14879-PA | 540 | CG14879-RA | 352..540 | 205..17 | 945 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:03:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14879-RB | 1749 | CG14879-RB | 343..789 | 463..17 | 2235 | 100 | Minus |
CG14879-RD | 1093 | CG14879-RD | 343..601 | 463..205 | 1295 | 100 | Minus |
CG14879-RC | 1041 | CG14879-RC | 343..601 | 463..205 | 1295 | 100 | Minus |
CG14879-RD | 1093 | CG14879-RD | 694..882 | 205..17 | 945 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:03:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16347093..16347281 | 17..205 | 945 | 100 | Plus |
3R | 32079331 | 3R | 16347374..16347528 | 205..359 | 775 | 100 | Plus |
3R | 32079331 | 3R | 16348781..16348884 | 360..463 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:03:29 has no hits.
BS11901.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:04 Download gff for
BS11901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14879-PB | 1..447 | 17..463 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:30 Download gff for
BS11901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14879-RB | 343..789 | 17..463 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:16:49 Download gff for
BS11901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14879-RB | 343..789 | 17..463 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:16:49 Download gff for
BS11901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16347093..16347280 | 17..204 | 100 | <- | Plus |
3R | 16347374..16347528 | 205..359 | 100 | <- | Plus |
3R | 16348781..16348884 | 360..463 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:30 Download gff for
BS11901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12172815..12173002 | 17..204 | 100 | <- | Plus |
arm_3R | 12173096..12173250 | 205..359 | 100 | <- | Plus |
arm_3R | 12174503..12174606 | 360..463 | 100 | | Plus |
BS11901.5prime Sequence
477 bp (477 high quality bases) assembled on 2006-06-16
> BS11901.5prime
GAAGTTATCAGTCGACATGCCTGATGTGAAGTTCTTTGCCGTGCTGCCCA
CCAATGCCAGTACCTCGGATCGAGTAACCCGGCTGTCCATCAGCGGCAAC
CTGCTCCAGGATCCCCAGCAATTCTCGGTGAACTTTGTCAACAGTCCGGA
CTGCACGGACAACATCACATACCACTTCAAGGTGGTGATTCCCACACAGA
CGATTATCGAGAATTATAAGCGGAACGGCGAGTGGAGCAGCCTGCACCAG
GAGAAGTACCTGAACATCTTCGACGAGTCCTCCTTTTGCCTTGAGTTCGC
CTTCGACTACGCAAATTCAATGATGCGGGTGTACCAGGGTAGGGATTCGG
GCCACAATTTCATAACCGAGTACGAGACTCTCTTCTCCCTGTCCGACATC
CAGGCTGTACAGGTGTGGGGCGATGTACAGAAGGTCAACCAGTTTGCCCT
AAGCTACAACTGAAAGCTTTCTAGACC
BS11901.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14879-PB | 447 | CG14879-RB | 1..447 | 17..463 | 2235 | 100 | Plus |
CG14879-PA | 540 | CG14879-RA | 1..259 | 17..275 | 1295 | 100 | Plus |
CG14879-PA | 540 | CG14879-RA | 352..540 | 275..463 | 945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:03:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14879-RB | 1749 | CG14879-RB | 343..789 | 17..463 | 2235 | 100 | Plus |
CG14879-RD | 1093 | CG14879-RD | 343..601 | 17..275 | 1295 | 100 | Plus |
CG14879-RC | 1041 | CG14879-RC | 343..601 | 17..275 | 1295 | 100 | Plus |
CG14879-RD | 1093 | CG14879-RD | 694..882 | 275..463 | 945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:03:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16347093..16347281 | 463..275 | 945 | 100 | Minus |
3R | 32079331 | 3R | 16347374..16347528 | 275..121 | 775 | 100 | Minus |
3R | 32079331 | 3R | 16348781..16348884 | 120..17 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:03:45 has no hits.
BS11901.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:04 Download gff for
BS11901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14879-PB | 1..447 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:35 Download gff for
BS11901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14879-RB | 343..789 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:17:15 Download gff for
BS11901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14879-RB | 343..789 | 17..463 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:17:15 Download gff for
BS11901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16347093..16347280 | 276..463 | 100 | <- | Minus |
3R | 16347374..16347528 | 121..275 | 100 | <- | Minus |
3R | 16348781..16348884 | 17..120 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:35 Download gff for
BS11901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12172815..12173002 | 276..463 | 100 | <- | Minus |
arm_3R | 12173096..12173250 | 121..275 | 100 | <- | Minus |
arm_3R | 12174503..12174606 | 17..120 | 100 | | Minus |
BS11901.complete Sequence
479 bp assembled on 2006-11-01
GenBank Submission: FJ637017
> BS11901.complete
GAAGTTATCAGTCGACATGCCTGATGTGAAGTTCTTTGCCGTGCTGCCCA
CCAATGCCAGTACCTCGGATCGAGTAACCCGGCTGTCCATCAGCGGCAAC
CTGCTCCAGGATCCCCAGCAATTCTCGGTGAACTTTGTCAACAGTCCGGA
CTGCACGGACAACATCACATACCACTTCAAGGTGGTGATTCCCACACAGA
CGATTATCGAGAATTATAAGCGGAACGGCGAGTGGAGCAGCCTGCACCAG
GAGAAGTACCTGAACATCTTCGACGAGTCCTCCTTTTGCCTTGAGTTCGC
CTTCGACTACGCAAATTCAATGATGCGGGTGTACCAGGGTAGGGATTCGG
GCCACAATTTCATAACCGAGTACGAGACTCTCTTCTCCCTGTCCGACATC
CAGGCTGTACAGGTGTGGGGCGATGTACAGAAGGTCAACCAGTTTGCCCT
AAGCTACAACTGAAAGCTTTCTAGACCAT
BS11901.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:40:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14879-RB | 447 | CG14879-PB | 1..447 | 17..463 | 2235 | 100 | Plus |
CG14879-RD | 540 | CG14879-PD | 1..259 | 17..275 | 1295 | 100 | Plus |
CG14879-RC | 540 | CG14879-PC | 1..259 | 17..275 | 1295 | 100 | Plus |
CG14879-RD | 540 | CG14879-PD | 352..540 | 275..463 | 945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:40:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14879-RB | 1749 | CG14879-RB | 343..789 | 17..463 | 2235 | 100 | Plus |
CG14879-RD | 1093 | CG14879-RD | 343..601 | 17..275 | 1295 | 100 | Plus |
CG14879-RC | 1041 | CG14879-RC | 343..601 | 17..275 | 1295 | 100 | Plus |
CG14879-RD | 1093 | CG14879-RD | 694..882 | 275..463 | 945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:40:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16347093..16347281 | 463..275 | 945 | 100 | Minus |
3R | 32079331 | 3R | 16347374..16347528 | 275..121 | 775 | 100 | Minus |
3R | 32079331 | 3R | 16348781..16348884 | 120..17 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:40:32 has no hits.
BS11901.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:34 Download gff for
BS11901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14879-RB | 1..447 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:06 Download gff for
BS11901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14879-RB | 341..787 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:33:21 Download gff for
BS11901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14879-RB | 343..788 | 17..462 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:34 Download gff for
BS11901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14879-RB | 341..787 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:39:18 Download gff for
BS11901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14879-RB | 343..788 | 17..462 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:39:18 Download gff for
BS11901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16347094..16347280 | 276..462 | 100 | <- | Minus |
3R | 16347374..16347528 | 121..275 | 100 | <- | Minus |
3R | 16348781..16348884 | 17..120 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:33:21 Download gff for
BS11901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12172816..12173002 | 276..462 | 100 | <- | Minus |
arm_3R | 12173096..12173250 | 121..275 | 100 | <- | Minus |
arm_3R | 12174503..12174606 | 17..120 | 100 | | Minus |
BS11901.pep Sequence
Translation from 16 to 462
> BS11901.pep
MPDVKFFAVLPTNASTSDRVTRLSISGNLLQDPQQFSVNFVNSPDCTDNI
TYHFKVVIPTQTIIENYKRNGEWSSLHQEKYLNIFDESSFCLEFAFDYAN
SMMRVYQGRDSGHNFITEYETLFSLSDIQAVQVWGDVQKVNQFALSYN*
BS11901.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14879-PB | 148 | CG14879-PB | 1..148 | 1..148 | 781 | 100 | Plus |
CG14879-PD | 179 | CG14879-PD | 1..179 | 1..148 | 739 | 82.7 | Plus |
CG14879-PC | 179 | CG14879-PC | 1..179 | 1..148 | 739 | 82.7 | Plus |
CG14879-PA | 179 | CG14879-PA | 1..179 | 1..148 | 739 | 82.7 | Plus |