Clone BS11904 Report

Search the DGRC for BS11904

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:119
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptGstE6-RA
Protein status:BS11904.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11904.3prime Sequence

699 bp (699 high quality bases) assembled on 2006-06-16

> BS11904.3prime
ATGGTCTAGAAAGCTTTCATGCTTCGAATGTGAAATTGGTCTTCTTGAAA
ATGGCCACCAACTGGCGGACGCCCTTGCCATTGGCTTCCTCGTAGTATGG
AAGCTGTTCCAGCTTTTTGATCCAAGCACCGATCCTGGGATACTTAGTCG
TATCCAAGGCCACGAAGGCCTCAAGGGAGGCCACCGATGAAACGAGACTG
AAATCCGCAATGGTCAGTTGATTGCCAGCAATGTAATCCTGTCCCTTGAG
AAAAGTTTCCACAAAATCGTAGATCTCGATAATGGCATCGTATCGCTCCT
TGGGTACTTTCGTCTGTCCCTGGAAGAGCACTGACTTCGATATGCTCCTT
ATGCCATTGGCAAAGACCACTCCGGATTCAAAGTGCAGCCGCTGATCCAC
AACAGCCCGCTTGAGAGGATCTTTCGGGTATAGGGCATCGGAATCGGCAT
ATTTCGAGACCAAATAGGCAATAATGGCATGCGAATCCCAGATGTAGTGA
CCGTCATCCTCCAGGGTGGGCACCGTATGCTGTGGATTCTTCTCCAGATA
TTCCGGTGAAAGTTGGGCACGAGCCACAATGTCAACGTTTACATATTCGT
AGGTTAGGTTTAGAGCGGCCAAAGTAAGCTTAACAGCGCGAACTGGGGGA
CTGGGGTCCAAACCGTATAAAGTCAATTTCACCATGTCGACTGATAACT

BS11904.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG17530-PA 669 GstE6-RA 1..669 685..17 3345 100 Minus
CG17527-PA 669 GstE5-RA 145..254 541..432 175 86.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:50:44
Subject Length Description Subject Range Query Range Score Percent Strand
GstE6-RA 751 CG17530-RA 32..700 685..17 3345 100 Minus
GstE5-RA 734 CG17527-RA 28..685 687..30 800 75 Minus
GstE7-RA 765 CG17531-RA 169..642 548..75 495 74.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:50:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18406042..18406710 685..17 3345 100 Minus
2R 25286936 2R 18404632..18405289 687..30 800 74.8 Minus
2R 25286936 2R 18407092..18407565 548..75 480 73.4 Minus
2R 25286936 2R 18408003..18408344 542..201 390 74.3 Minus
Blast to na_te.dros performed on 2015-02-12 03:50:43 has no hits.

BS11904.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:05 Download gff for BS11904.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17530-PA 1..669 17..685 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:40 Download gff for BS11904.3prime
Subject Subject Range Query Range Percent Splice Strand
GstE6-RA 32..704 11..685 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:59 Download gff for BS11904.3prime
Subject Subject Range Query Range Percent Splice Strand
GstE6-RA 32..704 11..685 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:56:59 Download gff for BS11904.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18406042..18406714 11..685 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:40 Download gff for BS11904.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14293547..14294219 11..685 99   Minus

BS11904.5prime Sequence

699 bp (699 high quality bases) assembled on 2006-06-16

> BS11904.5prime
GAAGTTATCAGTCGACATGGTGAAATTGACTTTATACGGTTTGGACCCCA
GTCCCCCAGTTCGCGCTGTTAAGCTTACTTTGGCCGCTCTAAACCTAACC
TACGAATATGTAAACGTTGACATTGTGGCTCGTGCCCAACTTTCACCGGA
ATATCTGGAGAAGAATCCACAGCATACGGTGCCCACCCTGGAGGATGACG
GTCACTACATCTGGGATTCGCATGCCATTATTGCCTATTTGGTCTCGAAA
TATGCCGATTCCGATGCCCTATACCCGAAAGATCCTCTCAAGCGGGCTGT
TGTGGATCAGCGGCTGCACTTTGAATCCGGAGTGGTCTTTGCCAATGGCA
TAAGGAGCATATCGAAGTCAGTGCTCTTCCAGGGACAGACGAAAGTACCC
AAGGAGCGATACGATGCCATTATCGAGATCTACGATTTTGTGGAAACTTT
TCTCAAGGGACAGGATTACATTGCTGGCAATCAACTGACCATTGCGGATT
TCAGTCTCGTTTCATCGGTGGCCTCCCTTGAGGCCTTCGTGGCCTTGGAT
ACGACTAAGTATCCCAGGATCGGTGCTTGGATCAAAAAGCTGGAACAGCT
TCCATACTACGAGGAAGCCAATGGCAAGGGCGTCCGCCAGTTGGTGGCCA
TTTTCAAGAAGACCAATTTCACATTCGAAGCATGAAAGCTTTCTAGACC

BS11904.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG17530-PA 669 GstE6-RA 1..669 17..685 3345 100 Plus
CG17527-PA 669 GstE5-RA 145..254 161..270 175 86.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:40:54
Subject Length Description Subject Range Query Range Score Percent Strand
GstE6-RA 751 CG17530-RA 32..700 17..685 3345 100 Plus
GstE5-RA 734 CG17527-RA 28..685 15..672 800 75 Plus
GstE7-RA 765 CG17531-RA 169..642 154..627 495 74.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18406042..18406710 17..685 3345 100 Plus
2R 25286936 2R 18404632..18405289 15..672 800 74.8 Plus
2R 25286936 2R 18407092..18407565 154..627 480 73.4 Plus
2R 25286936 2R 18408003..18408344 160..501 390 74.3 Plus
Blast to na_te.dros performed on 2015-02-12 17:40:53 has no hits.

BS11904.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:05 Download gff for BS11904.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17530-PA 1..669 17..685 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:14 Download gff for BS11904.5prime
Subject Subject Range Query Range Percent Splice Strand
GstE6-RA 32..704 17..691 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:49:27 Download gff for BS11904.5prime
Subject Subject Range Query Range Percent Splice Strand
GstE6-RA 32..704 17..691 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:49:27 Download gff for BS11904.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18406042..18406714 17..691 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:14 Download gff for BS11904.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14293547..14294219 17..691 99   Plus

BS11904.complete Sequence

701 bp assembled on 2006-11-01

GenBank Submission: FJ637018

> BS11904.complete
GAAGTTATCAGTCGACATGGTGAAATTGACTTTATACGGTTTGGACCCCA
GTCCCCCAGTTCGCGCTGTTAAGCTTACTTTGGCCGCTCTAAACCTAACC
TACGAATATGTAAACGTTGACATTGTGGCTCGTGCCCAACTTTCACCGGA
ATATCTGGAGAAGAATCCACAGCATACGGTGCCCACCCTGGAGGATGACG
GTCACTACATCTGGGATTCGCATGCCATTATTGCCTATTTGGTCTCGAAA
TATGCCGATTCCGATGCCCTATACCCGAAAGATCCTCTCAAGCGGGCTGT
TGTGGATCAGCGGCTGCACTTTGAATCCGGAGTGGTCTTTGCCAATGGCA
TAAGGAGCATATCGAAGTCAGTGCTCTTCCAGGGACAGACGAAAGTACCC
AAGGAGCGATACGATGCCATTATCGAGATCTACGATTTTGTGGAAACTTT
TCTCAAGGGACAGGATTACATTGCTGGCAATCAACTGACCATTGCGGATT
TCAGTCTCGTTTCATCGGTGGCCTCCCTTGAGGCCTTCGTGGCCTTGGAT
ACGACTAAGTATCCCAGGATCGGTGCTTGGATCAAAAAGCTGGAACAGCT
TCCATACTACGAGGAAGCCAATGGCAAGGGCGTCCGCCAGTTGGTGGCCA
TTTTCAAGAAGACCAATTTCACATTCGAAGCATGAAAGCTTTCTAGACCA
T

BS11904.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:59:45
Subject Length Description Subject Range Query Range Score Percent Strand
GstE6-RA 669 CG17530-PA 1..669 17..685 3345 100 Plus
GstE5-RA 669 CG17527-PA 1..656 17..672 790 74.7 Plus
GstE7-RA 672 CG17531-PA 138..611 154..627 480 73.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
GstE6-RA 751 CG17530-RA 32..700 17..685 3345 100 Plus
GstE5-RA 734 CG17527-RA 28..685 15..672 800 74.8 Plus
GstE7-RA 765 CG17531-RA 169..642 154..627 480 73.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:59:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18406042..18406710 17..685 3345 100 Plus
2R 25286936 2R 18404632..18405289 15..672 800 74.8 Plus
2R 25286936 2R 18407092..18407565 154..627 480 73.4 Plus
2R 25286936 2R 18408003..18408344 160..501 390 74.3 Plus
Blast to na_te.dros performed on 2014-11-27 13:59:44 has no hits.

BS11904.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:36 Download gff for BS11904.complete
Subject Subject Range Query Range Percent Splice Strand
GstE6-RA 1..669 17..685 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:54 Download gff for BS11904.complete
Subject Subject Range Query Range Percent Splice Strand
GstE6-RA 30..702 17..691 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:46 Download gff for BS11904.complete
Subject Subject Range Query Range Percent Splice Strand
GstE6-RA 32..699 17..684 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:36 Download gff for BS11904.complete
Subject Subject Range Query Range Percent Splice Strand
GstE6-RA 30..702 17..691 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:59 Download gff for BS11904.complete
Subject Subject Range Query Range Percent Splice Strand
GstE6-RA 32..699 17..684 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:59 Download gff for BS11904.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18406042..18406709 17..684 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:46 Download gff for BS11904.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14293547..14294214 17..684 100   Plus

BS11904.pep Sequence

Translation from 16 to 684

> BS11904.pep
MVKLTLYGLDPSPPVRAVKLTLAALNLTYEYVNVDIVARAQLSPEYLEKN
PQHTVPTLEDDGHYIWDSHAIIAYLVSKYADSDALYPKDPLKRAVVDQRL
HFESGVVFANGIRSISKSVLFQGQTKVPKERYDAIIEIYDFVETFLKGQD
YIAGNQLTIADFSLVSSVASLEAFVALDTTKYPRIGAWIKKLEQLPYYEE
ANGKGVRQLVAIFKKTNFTFEA*

BS11904.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
GstE6-PA 222 CG17530-PA 1..222 1..222 1134 100 Plus
GstE5-PA 222 CG17527-PA 1..220 1..220 884 75.5 Plus
GstE8-PB 222 CG17533-PB 1..220 1..220 831 70.5 Plus
GstE8-PA 222 CG17533-PA 1..220 1..220 831 70.5 Plus
GstE7-PA 223 CG17531-PA 1..220 1..220 826 70 Plus