Clone BS11908 Report

Search the DGRC for BS11908

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:119
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG44250-RB
Protein status:BS11908.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11908.3prime Sequence

744 bp (675 high quality bases) assembled on 2006-06-16

> BS11908.3prime
ATGGTCTAGAAAGCTTTTATTGTCTGCAGAGAATCTCGTACGAGTTGATG
CGAATCTCCCGACCTCCGTACGGAATATAGAGGCAACGCTGGCTGGCCGA
GATCAGACCCGGTGTCAAACTGCCCTGGTAGTGTCCTCGCCCATAGTACA
GCAGCTCTCCATTGCGAGCACGACCCGTGGTTACGGCGTTTGGTGGAATG
CTGTGGCCGCAATTCATCCATACATATCCGTAGCCAGTGAGCACCTCGTA
GCTGGGCTTCTGGAATTCGTATCCGCCGAAGCAAACGTAGGCGGTTCCCT
TGCTCGGCACCACCTTGGCAGGCAGCATTTCACCCTCGTGCATTGCCCTT
CCGGCGTAAATGGGAGTACGGTCGGAGTCGTGTCCGGCGATCACTGCGCC
CGGAGGAGTGTAACTGGGCGAGGCCGGTACCCAGACGTCGTGCTGCTGCT
TGATGAGCACCTCGTAGGTGTTGATGCGCACCTCCTGGCCGCCAAATGGA
ATGTATAGGCAGCCGTGCGATGGATGAACTTTGCCCACAGTCAAGCTTCC
GGCATGATGTCCGCGTCCCACATAGAGCGGCTCGCCCGTTCGCGTCGTTC
CGCTCCTCACCGCATTCGGTGGCACTCCACCGCTGGAACTGGGCACCCAG
GCAAATCCCTGACCCACCAGCACCTCGTAGTGCGTCTTCGTGTGCTCCGC
ACCACCGTAGGCCACATAGGCGCATCCCTTGCTCGGTACGACCT

BS11908.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3884-PB 861 CG3884-RB 134..861 744..17 3640 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:42:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG44250-RC 1100 CG44250-RC 284..1011 744..17 3640 100 Minus
CG44250-RB 1067 CG44250-RB 251..978 744..17 3640 100 Minus
CG32633-RB 956 CG32633-RB 794..864 547..477 190 84.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:42:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12950493..12951220 17..744 3640 100 Plus
X 23542271 X 13562712..13562782 547..477 190 84.5 Minus
Blast to na_te.dros performed on 2015-01-30 17:42:34 has no hits.

BS11908.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:05 Download gff for BS11908.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3884-PB 134..861 17..744 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:21 Download gff for BS11908.3prime
Subject Subject Range Query Range Percent Splice Strand
CG44250-RB 251..981 12..744 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:21 Download gff for BS11908.3prime
Subject Subject Range Query Range Percent Splice Strand
CG44250-RB 251..981 12..744 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:21 Download gff for BS11908.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12950490..12951220 12..744 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:21 Download gff for BS11908.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8837995..8838725 12..744 99   Plus

BS11908.5prime Sequence

758 bp (645 high quality bases) assembled on 2006-06-16

> BS11908.5prime
GAAGTTATCAGTCGACATGGACAACACCTGGGTGCACTCGTCTCCATACA
GCCCCCTGCCCCCATACGCGGTTATCGGTGGCCATGACTCGGACCGCACG
CCCATCTATGTGGGTCGATCCTTTCACGAAGGCGAGAATCTTCCCGCCAA
GGTCGTACCGAGCAAGGGATGCGCCTATGTGGCCTACGGTGGTGCGGAGC
ACACGAAGACGCACTACGAGGTGCTGGTGGGTCAGGGATTTGCCTGGGTG
CCCAGTTCCAGCGGTGGAGTGCCACCGAATGCGGTGAGGAGCGGAACGAC
GCGAACGGGCGAGCCGCTCTATGTGGGACGCGGACATCATGCCGGAAGCT
TGACTGTGGGCAAAGTTCATCCATCGCACGGCTGCCTATACATTCCATTT
GGCGGCCAGGAGGTGCGCATCAACACCTACGAGGTGCTCATCAAGCAGCA
GCACGACGTCTGGGTACCGGCCTCGCCCAGTTACACTCCTCCGGGCGCAG
TGATCGCCGGACACGACTCCGACCGTACTCCCATTTACGCCGGAAGGGCA
ATGCACGAGGGTGAAATGCTGCCTGCCAAGGTGGTGCCGAGCAAGGGAAC
CGCCTACGTTTGCTTCGGCGGATACGAATTCCAGAAGCCCAGCTACGAGG
TGCTCACTGGCTACGGATATGTATGGATGAATTGCGGCCACAGCATTCCA
CCAAACGCCGTAACCACGGGTCGTGCTCGCAATGGAGAGCTGCTGTACTA
TGGGCGAG

BS11908.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3884-PB 861 CG3884-RB 1..742 17..758 3710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG44250-RB 1067 CG44250-RB 118..859 17..758 3710 100 Plus
CG44250-RC 1100 CG44250-RC 154..892 20..758 3695 100 Plus
CG32633-RB 956 CG32633-RB 794..864 347..417 190 84.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12950612..12951350 758..20 3695 100 Minus
X 23542271 X 13562712..13562782 347..417 190 84.5 Plus
Blast to na_te.dros performed on 2015-02-02 17:50:49 has no hits.

BS11908.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:06 Download gff for BS11908.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3884-PB 1..742 17..758 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:04 Download gff for BS11908.5prime
Subject Subject Range Query Range Percent Splice Strand
CG44250-RB 118..859 17..758 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:43 Download gff for BS11908.5prime
Subject Subject Range Query Range Percent Splice Strand
CG44250-RB 118..859 17..758 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:43 Download gff for BS11908.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12950612..12951352 16..758 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:04 Download gff for BS11908.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8838117..8838857 16..758 99   Minus

BS11908.complete Sequence

893 bp assembled on 2006-11-01

GenBank Submission: FJ637019

> BS11908.complete
GAAGTTATCAGTCGACATGGACAACACCTGGGTGCACTCGTCTCCATACA
GCCCCCTGCCCCCATACGCGGTTATCGGTGGCCATGACTCGGACCGCACG
CCCATCTATGTGGGTCGATCCTTTCACGAAGGCGAGAATCTTCCCGCCAA
GGTCGTACCGAGCAAGGGATGCGCCTATGTGGCCTACGGTGGTGCGGAGC
ACACGAAGACGCACTACGAGGTGCTGGTGGGTCAGGGATTTGCCTGGGTG
CCCAGTTCCAGCGGTGGAGTGCCACCGAATGCGGTGAGGAGCGGAACGAC
GCGAACGGGCGAGCCGCTCTATGTGGGACGCGGACATCATGCCGGAAGCT
TGACTGTGGGCAAAGTTCATCCATCGCACGGCTGCCTATACATTCCATTT
GGCGGCCAGGAGGTGCGCATCAACACCTACGAGGTGCTCATCAAGCAGCA
GCACGACGTCTGGGTACCGGCCTCGCCCAGTTACACTCCTCCGGGCGCAG
TGATCGCCGGACACGACTCCGACCGTACTCCCATTTACGCCGGAAGGGCA
ATGCACGAGGGTGAAATGCTGCCTGCCAAGGTGGTGCCGAGCAAGGGAAC
CGCCTACGTTTGCTTCGGCGGATACGAATTCCAGAAGCCCAGCTACGAGG
TGCTCACTGGCTACGGATATGTATGGATGAATTGCGGCCACAGCATTCCA
CCAAACGCCGTAACCACGGGTCGTGCTCGCAATGGAGAGCTGCTGTACTA
TGGGCGAGGACACTACCAGGGCAGTTTGACACCGGGTCTGATCTCGGCCA
GCCAGCGTTGCCTCTATATTCCGTACGGAGGTCGGGAGATTCGCATCAAC
TCGTACGAGATTCTCTGCAGACAATAAAAGCTTTCTAGACCAT

BS11908.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG44250-RB 861 CG44250-PB 1..861 17..877 4305 100 Plus
CG44250-RC 894 CG44250-PC 37..894 20..877 4290 100 Plus
CG32633-RB 858 CG32633-PB 754..824 347..417 190 84.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG44250-RB 1067 CG44250-RB 118..978 17..877 4305 100 Plus
CG44250-RC 1100 CG44250-RC 154..1011 20..877 4290 100 Plus
CG32633-RB 956 CG32633-RB 794..864 347..417 190 84.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:09:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12950493..12951350 877..20 4290 100 Minus
X 23542271 X 13562712..13562782 347..417 190 84.5 Plus
Blast to na_te.dros performed on 2014-11-27 10:09:51 has no hits.

BS11908.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:37 Download gff for BS11908.complete
Subject Subject Range Query Range Percent Splice Strand
CG3884-RB 1..861 17..877 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:55 Download gff for BS11908.complete
Subject Subject Range Query Range Percent Splice Strand
CG3884-RB 111..974 17..882 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:16:03 Download gff for BS11908.complete
Subject Subject Range Query Range Percent Splice Strand
CG44250-RB 118..976 17..875 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:37 Download gff for BS11908.complete
Subject Subject Range Query Range Percent Splice Strand
CG3884-RB 111..974 17..882 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:37 Download gff for BS11908.complete
Subject Subject Range Query Range Percent Splice Strand
CG44250-RB 118..976 17..875 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:14:37 Download gff for BS11908.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12950495..12951351 17..875 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:16:03 Download gff for BS11908.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8838000..8838856 17..875 99   Minus

BS11908.pep Sequence

Translation from 16 to 876

> BS11908.pep
MDNTWVHSSPYSPLPPYAVIGGHDSDRTPIYVGRSFHEGENLPAKVVPSK
GCAYVAYGGAEHTKTHYEVLVGQGFAWVPSSSGGVPPNAVRSGTTRTGEP
LYVGRGHHAGSLTVGKVHPSHGCLYIPFGGQEVRINTYEVLIKQQHDVWV
PASPSYTPPGAVIAGHDSDRTPIYAGRAMHEGEMLPAKVVPSKGTAYVCF
GGYEFQKPSYEVLTGYGYVWMNCGHSIPPNAVTTGRARNGELLYYGRGHY
QGSLTPGLISASQRCLYIPYGGREIRINSYEILCRQ*

BS11908.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG44250-PB 286 CG44250-PB 1..286 1..286 1578 100 Plus
CG44250-PC 297 CG44250-PC 12..297 1..286 1574 99.7 Plus
CG13321-PB 286 CG13321-PB 3..285 2..285 878 56.5 Plus
CG13321-PA 286 CG13321-PA 3..285 2..285 878 56.5 Plus
CG32633-PB 285 CG32633-PB 3..284 2..285 734 49.8 Plus