Clone Sequence Records
BS11908.3prime Sequence
744 bp (675 high quality bases) assembled on 2006-06-16
> BS11908.3prime
ATGGTCTAGAAAGCTTTTATTGTCTGCAGAGAATCTCGTACGAGTTGATG
CGAATCTCCCGACCTCCGTACGGAATATAGAGGCAACGCTGGCTGGCCGA
GATCAGACCCGGTGTCAAACTGCCCTGGTAGTGTCCTCGCCCATAGTACA
GCAGCTCTCCATTGCGAGCACGACCCGTGGTTACGGCGTTTGGTGGAATG
CTGTGGCCGCAATTCATCCATACATATCCGTAGCCAGTGAGCACCTCGTA
GCTGGGCTTCTGGAATTCGTATCCGCCGAAGCAAACGTAGGCGGTTCCCT
TGCTCGGCACCACCTTGGCAGGCAGCATTTCACCCTCGTGCATTGCCCTT
CCGGCGTAAATGGGAGTACGGTCGGAGTCGTGTCCGGCGATCACTGCGCC
CGGAGGAGTGTAACTGGGCGAGGCCGGTACCCAGACGTCGTGCTGCTGCT
TGATGAGCACCTCGTAGGTGTTGATGCGCACCTCCTGGCCGCCAAATGGA
ATGTATAGGCAGCCGTGCGATGGATGAACTTTGCCCACAGTCAAGCTTCC
GGCATGATGTCCGCGTCCCACATAGAGCGGCTCGCCCGTTCGCGTCGTTC
CGCTCCTCACCGCATTCGGTGGCACTCCACCGCTGGAACTGGGCACCCAG
GCAAATCCCTGACCCACCAGCACCTCGTAGTGCGTCTTCGTGTGCTCCGC
ACCACCGTAGGCCACATAGGCGCATCCCTTGCTCGGTACGACCT
BS11908.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3884-PB | 861 | CG3884-RB | 134..861 | 744..17 | 3640 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:42:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG44250-RC | 1100 | CG44250-RC | 284..1011 | 744..17 | 3640 | 100 | Minus |
CG44250-RB | 1067 | CG44250-RB | 251..978 | 744..17 | 3640 | 100 | Minus |
CG32633-RB | 956 | CG32633-RB | 794..864 | 547..477 | 190 | 84.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:42:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12950493..12951220 | 17..744 | 3640 | 100 | Plus |
X | 23542271 | X | 13562712..13562782 | 547..477 | 190 | 84.5 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:42:34 has no hits.
BS11908.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:05 Download gff for
BS11908.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3884-PB | 134..861 | 17..744 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:21 Download gff for
BS11908.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG44250-RB | 251..981 | 12..744 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:21 Download gff for
BS11908.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG44250-RB | 251..981 | 12..744 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:21 Download gff for
BS11908.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12950490..12951220 | 12..744 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:21 Download gff for
BS11908.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8837995..8838725 | 12..744 | 99 | | Plus |
BS11908.5prime Sequence
758 bp (645 high quality bases) assembled on 2006-06-16
> BS11908.5prime
GAAGTTATCAGTCGACATGGACAACACCTGGGTGCACTCGTCTCCATACA
GCCCCCTGCCCCCATACGCGGTTATCGGTGGCCATGACTCGGACCGCACG
CCCATCTATGTGGGTCGATCCTTTCACGAAGGCGAGAATCTTCCCGCCAA
GGTCGTACCGAGCAAGGGATGCGCCTATGTGGCCTACGGTGGTGCGGAGC
ACACGAAGACGCACTACGAGGTGCTGGTGGGTCAGGGATTTGCCTGGGTG
CCCAGTTCCAGCGGTGGAGTGCCACCGAATGCGGTGAGGAGCGGAACGAC
GCGAACGGGCGAGCCGCTCTATGTGGGACGCGGACATCATGCCGGAAGCT
TGACTGTGGGCAAAGTTCATCCATCGCACGGCTGCCTATACATTCCATTT
GGCGGCCAGGAGGTGCGCATCAACACCTACGAGGTGCTCATCAAGCAGCA
GCACGACGTCTGGGTACCGGCCTCGCCCAGTTACACTCCTCCGGGCGCAG
TGATCGCCGGACACGACTCCGACCGTACTCCCATTTACGCCGGAAGGGCA
ATGCACGAGGGTGAAATGCTGCCTGCCAAGGTGGTGCCGAGCAAGGGAAC
CGCCTACGTTTGCTTCGGCGGATACGAATTCCAGAAGCCCAGCTACGAGG
TGCTCACTGGCTACGGATATGTATGGATGAATTGCGGCCACAGCATTCCA
CCAAACGCCGTAACCACGGGTCGTGCTCGCAATGGAGAGCTGCTGTACTA
TGGGCGAG
BS11908.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3884-PB | 861 | CG3884-RB | 1..742 | 17..758 | 3710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:50:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG44250-RB | 1067 | CG44250-RB | 118..859 | 17..758 | 3710 | 100 | Plus |
CG44250-RC | 1100 | CG44250-RC | 154..892 | 20..758 | 3695 | 100 | Plus |
CG32633-RB | 956 | CG32633-RB | 794..864 | 347..417 | 190 | 84.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:50:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12950612..12951350 | 758..20 | 3695 | 100 | Minus |
X | 23542271 | X | 13562712..13562782 | 347..417 | 190 | 84.5 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:50:49 has no hits.
BS11908.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:06 Download gff for
BS11908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3884-PB | 1..742 | 17..758 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:04 Download gff for
BS11908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG44250-RB | 118..859 | 17..758 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:43 Download gff for
BS11908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG44250-RB | 118..859 | 17..758 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:43 Download gff for
BS11908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12950612..12951352 | 16..758 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:04 Download gff for
BS11908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8838117..8838857 | 16..758 | 99 | | Minus |
BS11908.complete Sequence
893 bp assembled on 2006-11-01
GenBank Submission: FJ637019
> BS11908.complete
GAAGTTATCAGTCGACATGGACAACACCTGGGTGCACTCGTCTCCATACA
GCCCCCTGCCCCCATACGCGGTTATCGGTGGCCATGACTCGGACCGCACG
CCCATCTATGTGGGTCGATCCTTTCACGAAGGCGAGAATCTTCCCGCCAA
GGTCGTACCGAGCAAGGGATGCGCCTATGTGGCCTACGGTGGTGCGGAGC
ACACGAAGACGCACTACGAGGTGCTGGTGGGTCAGGGATTTGCCTGGGTG
CCCAGTTCCAGCGGTGGAGTGCCACCGAATGCGGTGAGGAGCGGAACGAC
GCGAACGGGCGAGCCGCTCTATGTGGGACGCGGACATCATGCCGGAAGCT
TGACTGTGGGCAAAGTTCATCCATCGCACGGCTGCCTATACATTCCATTT
GGCGGCCAGGAGGTGCGCATCAACACCTACGAGGTGCTCATCAAGCAGCA
GCACGACGTCTGGGTACCGGCCTCGCCCAGTTACACTCCTCCGGGCGCAG
TGATCGCCGGACACGACTCCGACCGTACTCCCATTTACGCCGGAAGGGCA
ATGCACGAGGGTGAAATGCTGCCTGCCAAGGTGGTGCCGAGCAAGGGAAC
CGCCTACGTTTGCTTCGGCGGATACGAATTCCAGAAGCCCAGCTACGAGG
TGCTCACTGGCTACGGATATGTATGGATGAATTGCGGCCACAGCATTCCA
CCAAACGCCGTAACCACGGGTCGTGCTCGCAATGGAGAGCTGCTGTACTA
TGGGCGAGGACACTACCAGGGCAGTTTGACACCGGGTCTGATCTCGGCCA
GCCAGCGTTGCCTCTATATTCCGTACGGAGGTCGGGAGATTCGCATCAAC
TCGTACGAGATTCTCTGCAGACAATAAAAGCTTTCTAGACCAT
BS11908.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:09:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG44250-RB | 861 | CG44250-PB | 1..861 | 17..877 | 4305 | 100 | Plus |
CG44250-RC | 894 | CG44250-PC | 37..894 | 20..877 | 4290 | 100 | Plus |
CG32633-RB | 858 | CG32633-PB | 754..824 | 347..417 | 190 | 84.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:09:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG44250-RB | 1067 | CG44250-RB | 118..978 | 17..877 | 4305 | 100 | Plus |
CG44250-RC | 1100 | CG44250-RC | 154..1011 | 20..877 | 4290 | 100 | Plus |
CG32633-RB | 956 | CG32633-RB | 794..864 | 347..417 | 190 | 84.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:09:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12950493..12951350 | 877..20 | 4290 | 100 | Minus |
X | 23542271 | X | 13562712..13562782 | 347..417 | 190 | 84.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:09:51 has no hits.
BS11908.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:37 Download gff for
BS11908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3884-RB | 1..861 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:55 Download gff for
BS11908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3884-RB | 111..974 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:16:03 Download gff for
BS11908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG44250-RB | 118..976 | 17..875 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:37 Download gff for
BS11908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3884-RB | 111..974 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:37 Download gff for
BS11908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG44250-RB | 118..976 | 17..875 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:14:37 Download gff for
BS11908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12950495..12951351 | 17..875 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:16:03 Download gff for
BS11908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8838000..8838856 | 17..875 | 99 | | Minus |
BS11908.pep Sequence
Translation from 16 to 876
> BS11908.pep
MDNTWVHSSPYSPLPPYAVIGGHDSDRTPIYVGRSFHEGENLPAKVVPSK
GCAYVAYGGAEHTKTHYEVLVGQGFAWVPSSSGGVPPNAVRSGTTRTGEP
LYVGRGHHAGSLTVGKVHPSHGCLYIPFGGQEVRINTYEVLIKQQHDVWV
PASPSYTPPGAVIAGHDSDRTPIYAGRAMHEGEMLPAKVVPSKGTAYVCF
GGYEFQKPSYEVLTGYGYVWMNCGHSIPPNAVTTGRARNGELLYYGRGHY
QGSLTPGLISASQRCLYIPYGGREIRINSYEILCRQ*
BS11908.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG44250-PB | 286 | CG44250-PB | 1..286 | 1..286 | 1578 | 100 | Plus |
CG44250-PC | 297 | CG44250-PC | 12..297 | 1..286 | 1574 | 99.7 | Plus |
CG13321-PB | 286 | CG13321-PB | 3..285 | 2..285 | 878 | 56.5 | Plus |
CG13321-PA | 286 | CG13321-PA | 3..285 | 2..285 | 878 | 56.5 | Plus |
CG32633-PB | 285 | CG32633-PB | 3..284 | 2..285 | 734 | 49.8 | Plus |