BS11910.complete Sequence
1652 bp assembled on 2009-08-26
GenBank Submission: KX802604
> BS11910.complete
GAAGTTATCAGTCGACATGTACGGTGGAGACGAATACGCAACCAACTCGG
ATTACTACGATGACTACGCTCATACCGGAGACCCGCAACTGGACATGGAG
TACGAGAGGAACTACTACGCCGCCCGGATGCCGGACAACGTCAAGTACTT
CCTCATAAACTTCTGCCAGGCGATCAAAGAGGGCAACTTGTACGACATCC
AAAACATGTACGAGAACACGTTCCCGCAGATCAGCGACCACCACTTCGAC
AAGACTGCTTGGCCCGAGGAGCAGGAGGTGGCTGCTATTGTAGACAACGA
CAAGGTCTTCCTGATCTTATACAAGGAGTTGTACTATCGCCACATCCACG
CCCGCATCCCCGGTGGTCCCAAGTTGGAGCAGAGGATCAACTCGTTCTTC
AACTACTGCGACTTCTTCAACCTGATCATCTCGGCCCAGAACCCAGTGAT
GCTGGAGCTGCCCGACATCTGGCTGTGGGAGTTGGTGGATGAGTTCGTGT
ATCAGTTCCAGAACTTCGCGCAGTATCGCGCCCGCCTTACGGAGAAATCG
CAGGATGAGATCCAGCAGCTGTGCGTGAACCACAGCAACGAGTGGAGCAT
TCTCTGCATCCTCAACGTTCTGCATTCCCTTGTGGACATCTCGAACATCA
AGAAGCAGCTGGAGGCCATCTCTCAAGGTGTTGATCCCCAAACCGTGGCC
GGTGACTTCGGCAAACTGTCCTTCTACAAGATGCTGGGATACTTCTCCCT
TGTCGGACTGCTGCGCGTTCATTCGCTGCTGGGTGACTACTACCAGGCCA
TCAAGGTGCTGGAGCCCATTGAGATCCACAAGAAGTCCGCCTATTCGCAC
ATCCCCGCCTGCCAAATCTCGACGTCGTACTACGTGGGCTTCGCCTACAT
GATGATGCGCCGCTACGCTGATGCCATCCGCACCTTTTCTGATATCCTCC
TGTACATTCAGCGTACCAAGCAGCTGTACAGCACGCGTTCATACCAAAAC
GATCAAATCAACAAGCAGGCCGAGCAGATGTACCATCTTTTGGCCATCTG
CCTGGTACTCCATCCCCAGTGCATCGACGAGTCCATCCAGCAGGTGCTCA
GGGAAAAGAACTACCACGACGCCATGTTTAAGATGCAGTGCGGTGATCTG
GAGGTCTTCAAGTCCTTCTTTGTCTTCGCCTGCCCACGTTTCGTGAGCCC
CTGCCCGCCAGCTGTAGACGCACCCATGGACGACTACGTCAAGGACCCCA
TGGAACACCAGTTGCAGGTTTTCATGGATGAGGTGCGCCAGCAGAAGGAT
CTGCCCACAACGCGCTCGTATCTAAAGCTGTACACCACCCTGCCGCTGAC
CAAACTGGCATCTTTCATCGATCCCAACGCCAGCGAGGATGACGTGTCGA
AGCTGCTGATTCGCCTGCTTTGCTTCAAGCACAAAATGCGCAACCTAGTG
TGGAGCAAGGGACCCAGCGGCCTGGAAGGCACATTCAAGTCTGGCTCCGA
GTTGGACTTCTACATCGACGACGACATGATCCACATAGCCGACACCAAGG
TTTCACATCGGTATGGCGACTTCTTTGTGCGTAAAATTCTTAAGTTCAAC
GATCTGAATCGCAAATTGAAGAACATCAACATTTAAAAGCTTTCTAGACC
AT
BS11910.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:34:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5642-RA | 1620 | CG5642-PA | 1..1620 | 17..1636 | 8085 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5642-RA | 1834 | CG5642-RA | 110..1729 | 17..1636 | 8085 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12143745..12144718 | 1501..528 | 4855 | 99.9 | Minus |
| 3L | 28110227 | 3L | 12144772..12145251 | 528..49 | 2400 | 100 | Minus |
| 3L | 28110227 | 3L | 12143551..12143687 | 1636..1500 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:34:57 has no hits.
BS11910.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:26 Download gff for
BS11910.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5642-RA | 128..1745 | 17..1634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:51:45 Download gff for
BS11910.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5642-RA | 110..1727 | 17..1634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:59 Download gff for
BS11910.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5642-RA | 110..1727 | 17..1634 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:59 Download gff for
BS11910.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12143553..12143685 | 1502..1634 | 100 | <- | Minus |
| 3L | 12143745..12144717 | 529..1501 | 99 | <- | Minus |
| 3L | 12144772..12145250 | 50..528 | 100 | <- | Minus |
| 3L | 12145956..12145988 | 17..49 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:51:45 Download gff for
BS11910.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12136653..12136785 | 1502..1634 | 100 | <- | Minus |
| arm_3L | 12136845..12137817 | 529..1501 | 99 | <- | Minus |
| arm_3L | 12137872..12138350 | 50..528 | 100 | <- | Minus |
| arm_3L | 12139056..12139088 | 17..49 | 100 | | Minus |
BS11910.pep Sequence
Translation from 16 to 1635
> BS11910.pep
MYGGDEYATNSDYYDDYAHTGDPQLDMEYERNYYAARMPDNVKYFLINFC
QAIKEGNLYDIQNMYENTFPQISDHHFDKTAWPEEQEVAAIVDNDKVFLI
LYKELYYRHIHARIPGGPKLEQRINSFFNYCDFFNLIISAQNPVMLELPD
IWLWELVDEFVYQFQNFAQYRARLTEKSQDEIQQLCVNHSNEWSILCILN
VLHSLVDISNIKKQLEAISQGVDPQTVAGDFGKLSFYKMLGYFSLVGLLR
VHSLLGDYYQAIKVLEPIEIHKKSAYSHIPACQISTSYYVGFAYMMMRRY
ADAIRTFSDILLYIQRTKQLYSTRSYQNDQINKQAEQMYHLLAICLVLHP
QCIDESIQQVLREKNYHDAMFKMQCGDLEVFKSFFVFACPRFVSPCPPAV
DAPMDDYVKDPMEHQLQVFMDEVRQQKDLPTTRSYLKLYTTLPLTKLASF
IDPNASEDDVSKLLIRLLCFKHKMRNLVWSKGPSGLEGTFKSGSELDFYI
DDDMIHIADTKVSHRYGDFFVRKILKFNDLNRKLKNINI*
BS11910.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:33:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5642-PA | 539 | CG5642-PA | 1..539 | 1..539 | 2873 | 100 | Plus |
