BS11913.complete Sequence
1220 bp assembled on 2006-11-01
GenBank Submission: FJ637020
> BS11913.complete
GAAGTTATCAGTCGACATGTCCTCCCGACGCAGCTCCTTCAGGCGGAGGG
AGAAGCCGGCCTTCGAGCGCTTTAAGGACCACTGCCGCCACTTCACGGCG
TTCATGTTCAGCAACGTGGGCATCATTCTACTGGTCACATTTTATATTAT
CGGCGGAGCGTTCATATTCCAGAGCATCGAGATTTTCGAGTACGAGCGGC
TCAAGTCGGAGAAGCCGCACCGGTTTATAGCACGGAACTTCAGTGGCGAG
TGCCTCAGCCGCATATGGGAGTTGACGGCGGAGAACATCAGCTTCTTCGA
CCACCACGCCTACAGGAGACGGGTGAACGATGTGCTTCTGGATTATCAGA
GGGCCATAGTGAAAAAGCAGCTGAAGGGACCCGACGTGGAGCAGTGGAGC
TTCTCCGGAGCTTTTCTCTACTCACTGACGGTGATCACGACCATCGGGTA
CGGGAACATTACGCCGCACTCCGAGTGCGGAAAGCTGGTGACCATTCTAT
ATGCGATAATTGGCATGCCGCTGTTCTTGCTCTACCTGTCCAACATTGGA
GACGTCCTGGCCAAGTCCTTCAAGTGGATATACTCGAAGGTGTGCCTATG
TCGCATCTGCCCCGGCGTGGCCAAGCGCCGGATAATCCGCGAGAGACGAA
AAATGCGACAGTTGGCCAGAGCGCTCCAGATGCACGACATGGAGAATGCC
CGGGGAAGCAGCAGCTACACTAGCACCAGCAGTACCACCTCCTCCAACAG
CAGCAGTAGCGAATACACCAGAAGTTCCCGCCAGAGTTCCAGCCTCGTGG
ATATTCAGTACACCGAGTCTGATTCGGATATCGAGCGGGAAATACGCGGC
AGCACGGATGAAATTACAGTGCCAGTCACTGTGTGCGTCTTCGTTATGGT
CGGGTATATCCTGTGGGGTGCGCTGCTCTTCGGTCGTTGGGAGGACTGGA
ACTATCTGGATGGGAGCTACTTCTGCCTTATATCGCTCAGCAGCATTGGA
TTTGGCGATCTGGTGCCAGGCGATCGTGTGATAACTGCCGACAGGGATAA
GGTGGAGGTTAGCTTCATTCTCTGCGCCATATATCTGCTGCTCGGCATGG
CCGTGATTGCCATGTGCTTCAATTTGATGCAGGAGCAGGTCGTTCACAAC
ATTCGGGCGATCAAGCGGGGATTCAAGGCCTGCTTTCGGTGCCGCACCTC
CTAGAAGCTTTCTAGACCAT
BS11913.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:25:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8713-RA | 1188 | CG8713-PA | 1..1188 | 17..1204 | 5940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:25:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8713-RA | 1978 | CG8713-RA | 603..1798 | 14..1209 | 5965 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:25:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8095595..8095947 | 321..673 | 1765 | 100 | Plus |
2R | 25286936 | 2R | 8095211..8095519 | 14..322 | 1545 | 100 | Plus |
2R | 25286936 | 2R | 8096013..8096247 | 673..907 | 1175 | 100 | Plus |
2R | 25286936 | 2R | 8096303..8096430 | 903..1030 | 640 | 100 | Plus |
2R | 25286936 | 2R | 8096534..8096637 | 1030..1133 | 520 | 100 | Plus |
2R | 25286936 | 2R | 8096687..8096768 | 1128..1209 | 395 | 98.8 | Plus |
Blast to na_te.dros performed 2014-11-27 15:25:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..6898 | 707..774 | 169 | 72.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1625 | 709..794 | 162 | 66.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1093..1164 | 705..776 | 162 | 69.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6802 | 707..774 | 160 | 70.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2717..2850 | 651..793 | 154 | 60.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2391 | 704..793 | 146 | 64.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2368..2434 | 707..773 | 146 | 68.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..6809 | 707..760 | 144 | 74.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2392 | 707..773 | 137 | 67.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1083..1136 | 707..760 | 135 | 72.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6802..6867 | 705..773 | 122 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..6825 | 707..755 | 119 | 71.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1069..1141 | 705..774 | 115 | 64.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6781 | 718..774 | 114 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2783..2831 | 708..756 | 110 | 69.4 | Plus |
BS11913.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:17 Download gff for
BS11913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8713-RA | 1..1188 | 17..1204 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:31 Download gff for
BS11913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8713-RA | 598..1806 | 9..1219 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:39 Download gff for
BS11913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8713-RA | 606..1793 | 17..1204 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:17 Download gff for
BS11913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8713-RA | 598..1806 | 9..1219 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:34 Download gff for
BS11913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8713-RA | 606..1793 | 17..1204 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:34 Download gff for
BS11913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8096535..8096636 | 1031..1132 | 100 | -> | Plus |
2R | 8096692..8096763 | 1133..1204 | 100 | | Plus |
2R | 8095214..8095518 | 17..321 | 100 | -> | Plus |
2R | 8095596..8095947 | 322..673 | 100 | -> | Plus |
2R | 8096014..8096243 | 674..903 | 100 | -> | Plus |
2R | 8096304..8096430 | 904..1030 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:39 Download gff for
BS11913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3982719..3983023 | 17..321 | 100 | -> | Plus |
arm_2R | 3983101..3983452 | 322..673 | 100 | -> | Plus |
arm_2R | 3983519..3983748 | 674..903 | 100 | -> | Plus |
arm_2R | 3983809..3983935 | 904..1030 | 100 | -> | Plus |
arm_2R | 3984040..3984141 | 1031..1132 | 100 | -> | Plus |
arm_2R | 3984197..3984268 | 1133..1204 | 100 | | Plus |
BS11913.pep Sequence
Translation from 16 to 1203
> BS11913.pep
MSSRRSSFRRREKPAFERFKDHCRHFTAFMFSNVGIILLVTFYIIGGAFI
FQSIEIFEYERLKSEKPHRFIARNFSGECLSRIWELTAENISFFDHHAYR
RRVNDVLLDYQRAIVKKQLKGPDVEQWSFSGAFLYSLTVITTIGYGNITP
HSECGKLVTILYAIIGMPLFLLYLSNIGDVLAKSFKWIYSKVCLCRICPG
VAKRRIIRERRKMRQLARALQMHDMENARGSSSYTSTSSTTSSNSSSSEY
TRSSRQSSSLVDIQYTESDSDIEREIRGSTDEITVPVTVCVFVMVGYILW
GALLFGRWEDWNYLDGSYFCLISLSSIGFGDLVPGDRVITADRDKVEVSF
ILCAIYLLLGMAVIAMCFNLMQEQVVHNIRAIKRGFKACFRCRTS*
BS11913.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8713-PA | 395 | CG8713-PA | 1..395 | 1..395 | 2051 | 100 | Plus |
CG42594-PD | 905 | CG42594-PD | 594..857 | 121..382 | 428 | 33.7 | Plus |
CG42594-PA | 905 | CG42594-PA | 594..857 | 121..382 | 428 | 33.7 | Plus |
CG42594-PC | 1039 | CG42594-PC | 594..857 | 121..382 | 428 | 33.7 | Plus |
CG10864-PA | 389 | CG10864-PA | 34..365 | 17..389 | 412 | 29.8 | Plus |