Clone BS11913 Report

Search the DGRC for BS11913

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:119
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG8713-RA
Protein status:BS11913.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11913.complete Sequence

1220 bp assembled on 2006-11-01

GenBank Submission: FJ637020

> BS11913.complete
GAAGTTATCAGTCGACATGTCCTCCCGACGCAGCTCCTTCAGGCGGAGGG
AGAAGCCGGCCTTCGAGCGCTTTAAGGACCACTGCCGCCACTTCACGGCG
TTCATGTTCAGCAACGTGGGCATCATTCTACTGGTCACATTTTATATTAT
CGGCGGAGCGTTCATATTCCAGAGCATCGAGATTTTCGAGTACGAGCGGC
TCAAGTCGGAGAAGCCGCACCGGTTTATAGCACGGAACTTCAGTGGCGAG
TGCCTCAGCCGCATATGGGAGTTGACGGCGGAGAACATCAGCTTCTTCGA
CCACCACGCCTACAGGAGACGGGTGAACGATGTGCTTCTGGATTATCAGA
GGGCCATAGTGAAAAAGCAGCTGAAGGGACCCGACGTGGAGCAGTGGAGC
TTCTCCGGAGCTTTTCTCTACTCACTGACGGTGATCACGACCATCGGGTA
CGGGAACATTACGCCGCACTCCGAGTGCGGAAAGCTGGTGACCATTCTAT
ATGCGATAATTGGCATGCCGCTGTTCTTGCTCTACCTGTCCAACATTGGA
GACGTCCTGGCCAAGTCCTTCAAGTGGATATACTCGAAGGTGTGCCTATG
TCGCATCTGCCCCGGCGTGGCCAAGCGCCGGATAATCCGCGAGAGACGAA
AAATGCGACAGTTGGCCAGAGCGCTCCAGATGCACGACATGGAGAATGCC
CGGGGAAGCAGCAGCTACACTAGCACCAGCAGTACCACCTCCTCCAACAG
CAGCAGTAGCGAATACACCAGAAGTTCCCGCCAGAGTTCCAGCCTCGTGG
ATATTCAGTACACCGAGTCTGATTCGGATATCGAGCGGGAAATACGCGGC
AGCACGGATGAAATTACAGTGCCAGTCACTGTGTGCGTCTTCGTTATGGT
CGGGTATATCCTGTGGGGTGCGCTGCTCTTCGGTCGTTGGGAGGACTGGA
ACTATCTGGATGGGAGCTACTTCTGCCTTATATCGCTCAGCAGCATTGGA
TTTGGCGATCTGGTGCCAGGCGATCGTGTGATAACTGCCGACAGGGATAA
GGTGGAGGTTAGCTTCATTCTCTGCGCCATATATCTGCTGCTCGGCATGG
CCGTGATTGCCATGTGCTTCAATTTGATGCAGGAGCAGGTCGTTCACAAC
ATTCGGGCGATCAAGCGGGGATTCAAGGCCTGCTTTCGGTGCCGCACCTC
CTAGAAGCTTTCTAGACCAT

BS11913.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG8713-RA 1188 CG8713-PA 1..1188 17..1204 5940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:25:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG8713-RA 1978 CG8713-RA 603..1798 14..1209 5965 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8095595..8095947 321..673 1765 100 Plus
2R 25286936 2R 8095211..8095519 14..322 1545 100 Plus
2R 25286936 2R 8096013..8096247 673..907 1175 100 Plus
2R 25286936 2R 8096303..8096430 903..1030 640 100 Plus
2R 25286936 2R 8096534..8096637 1030..1133 520 100 Plus
2R 25286936 2R 8096687..8096768 1128..1209 395 98.8 Plus
Blast to na_te.dros performed 2014-11-27 15:25:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6831..6898 707..774 169 72.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1539..1625 709..794 162 66.7 Plus
roo 9092 roo DM_ROO 9092bp 1093..1164 705..776 162 69.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6802 707..774 160 70.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2717..2850 651..793 154 60.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2391 704..793 146 64.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2368..2434 707..773 146 68.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6756..6809 707..760 144 74.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2326..2392 707..773 137 67.2 Plus
roo 9092 roo DM_ROO 9092bp 1083..1136 707..760 135 72.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6802..6867 705..773 122 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6777..6825 707..755 119 71.4 Plus
roo 9092 roo DM_ROO 9092bp 1069..1141 705..774 115 64.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6781 718..774 114 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2783..2831 708..756 110 69.4 Plus

BS11913.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:17 Download gff for BS11913.complete
Subject Subject Range Query Range Percent Splice Strand
CG8713-RA 1..1188 17..1204 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:31 Download gff for BS11913.complete
Subject Subject Range Query Range Percent Splice Strand
CG8713-RA 598..1806 9..1219 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:39 Download gff for BS11913.complete
Subject Subject Range Query Range Percent Splice Strand
CG8713-RA 606..1793 17..1204 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:17 Download gff for BS11913.complete
Subject Subject Range Query Range Percent Splice Strand
CG8713-RA 598..1806 9..1219 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:34 Download gff for BS11913.complete
Subject Subject Range Query Range Percent Splice Strand
CG8713-RA 606..1793 17..1204 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:34 Download gff for BS11913.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8096535..8096636 1031..1132 100 -> Plus
2R 8096692..8096763 1133..1204 100   Plus
2R 8095214..8095518 17..321 100 -> Plus
2R 8095596..8095947 322..673 100 -> Plus
2R 8096014..8096243 674..903 100 -> Plus
2R 8096304..8096430 904..1030 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:39 Download gff for BS11913.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3982719..3983023 17..321 100 -> Plus
arm_2R 3983101..3983452 322..673 100 -> Plus
arm_2R 3983519..3983748 674..903 100 -> Plus
arm_2R 3983809..3983935 904..1030 100 -> Plus
arm_2R 3984040..3984141 1031..1132 100 -> Plus
arm_2R 3984197..3984268 1133..1204 100   Plus

BS11913.pep Sequence

Translation from 16 to 1203

> BS11913.pep
MSSRRSSFRRREKPAFERFKDHCRHFTAFMFSNVGIILLVTFYIIGGAFI
FQSIEIFEYERLKSEKPHRFIARNFSGECLSRIWELTAENISFFDHHAYR
RRVNDVLLDYQRAIVKKQLKGPDVEQWSFSGAFLYSLTVITTIGYGNITP
HSECGKLVTILYAIIGMPLFLLYLSNIGDVLAKSFKWIYSKVCLCRICPG
VAKRRIIRERRKMRQLARALQMHDMENARGSSSYTSTSSTTSSNSSSSEY
TRSSRQSSSLVDIQYTESDSDIEREIRGSTDEITVPVTVCVFVMVGYILW
GALLFGRWEDWNYLDGSYFCLISLSSIGFGDLVPGDRVITADRDKVEVSF
ILCAIYLLLGMAVIAMCFNLMQEQVVHNIRAIKRGFKACFRCRTS*

BS11913.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG8713-PA 395 CG8713-PA 1..395 1..395 2051 100 Plus
CG42594-PD 905 CG42594-PD 594..857 121..382 428 33.7 Plus
CG42594-PA 905 CG42594-PA 594..857 121..382 428 33.7 Plus
CG42594-PC 1039 CG42594-PC 594..857 121..382 428 33.7 Plus
CG10864-PA 389 CG10864-PA 34..365 17..389 412 29.8 Plus