BS11916.complete Sequence
1121 bp assembled on 2007-10-17
GenBank Submission: FJ637021
> BS11916.complete
GAAGTTATCAGTCGACATGACGCGATCTTCGCCAGCTTGGTGTGCTGGCC
AGGCCTGGCTCGTCTGGCTTTTGGCATCCATCTGGATACGCACGTGTCTC
GCGCAATTTGCAGTCTCCTCGTCCTCCGCCGGCGGAGCTGTTGCCTCCGC
CGGTGGCGTCACTGTGGTGGCCCAGCTGCCCGGTTTCGGAGTTATCAATG
GACTGATCAATGCCATGCACAACAACAACCGCTTCAACCAGCAGCCGCAG
TTCGAGAGACTGCAGCAAGGAAGGCCGGGGATGGGTCCGAATCGAGGAGG
AATGCACAGACCAGGATTTGCACCACCCAACCGTCAGCAACCGACGCCTC
CTGGCTGGCCACCCGGCTGGCAGTGGGGAGCCGGTGGAAATCAGAATCAA
CCCGGATTTGACTGGGTTCAAACAGGATTTGCACCAGGCTGGAATGGAGG
TGGAGGGCAAGGACCAGGATGGAATGGTCCAGGATGGAACGGAGGCGGTG
GAAGAGGACCTCCACCAAGACCAGGTTTTAACGGCGGCGGACCACCGCCG
CCAAGACCAGGATGGAACGGCGGCGGGCCACCACCACCGATGCCAGGCTG
GAATGGAGGAGGGCCACCGCCACCAAGGCCAGGATGGAATGGCGGAGGAC
CTCCGCCACCAAGGCCAGGCTGGAATGGAGGGATGGAACAGGAATGGGAT
AACTATCCACGCCTCCCCGATCAGCCGGATCCCAATGATCCAAACACGAA
TTGGAATCCAGATAATGAGTCTAGCACCACTCCACAAACGCCAATACCAG
GACCCATCTTTCCAACGACAACACCTAAGCCAGAGCCCACCTTTCCCACG
ATCCAGCCACGTCCAACCGCTCAGCCAACGAAGGATACGCTCATAATAGG
AACCAATCGACCGCCGTTGGTGCCGCCCCATAATCCGGATCCACCCACGC
CCACTTTTCCCACTTGGATCGTGCCGGAGCCATTGCCAAAACCATTGGAC
GAACTCTCCGAAAATCGTGCTATTATATTCCCCAGCTCTAGCAAATATAT
CCATGTGCCAAACCCGGAGGTTCCCTCAATTCCCATTGATGTGAGACGAA
GATGAAAGCTTTCTAGACCAT
BS11916.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:52:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7016-RA | 1089 | CG7016-PA | 1..1089 | 17..1105 | 5445 | 100 | Plus |
| CG7016-RA | 1089 | CG7016-PA | 528..662 | 508..642 | 330 | 83 | Plus |
| CG7016-RA | 1089 | CG7016-PA | 492..626 | 544..678 | 330 | 83 | Plus |
| CG7016-RA | 1089 | CG7016-PA | 564..665 | 508..609 | 210 | 80.4 | Plus |
| CG7016-RA | 1089 | CG7016-PA | 492..593 | 580..681 | 210 | 80.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:52:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7016-RA | 1286 | CG7016-RA | 49..1140 | 15..1106 | 5460 | 100 | Plus |
| CG7016-RA | 1286 | CG7016-RA | 542..676 | 544..678 | 330 | 83 | Plus |
| CG7016-RA | 1286 | CG7016-RA | 578..712 | 508..642 | 330 | 83 | Plus |
| CG7016-RA | 1286 | CG7016-RA | 542..643 | 580..681 | 210 | 80.4 | Plus |
| CG7016-RA | 1286 | CG7016-RA | 614..715 | 508..609 | 210 | 80.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:52:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24862979..24864070 | 15..1106 | 5460 | 100 | Plus |
| 3R | 32079331 | 3R | 24863472..24863606 | 544..678 | 330 | 83 | Plus |
| 3R | 32079331 | 3R | 24863508..24863642 | 508..642 | 330 | 83 | Plus |
| 3R | 32079331 | 3R | 24863472..24863573 | 580..681 | 210 | 80.4 | Plus |
| 3R | 32079331 | 3R | 24863544..24863645 | 508..609 | 210 | 80.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:52:02 has no hits.
BS11916.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:14:35 Download gff for
BS11916.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7016-RA | 1..1089 | 17..1105 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:45:26 Download gff for
BS11916.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7016-RA | 41..1146 | 9..1115 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:58 Download gff for
BS11916.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7016-RA | 51..1138 | 17..1104 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:35:30 Download gff for
BS11916.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7016-RA | 50..1137 | 17..1104 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:34 Download gff for
BS11916.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7016-RA | 51..1138 | 17..1104 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:34 Download gff for
BS11916.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24862981..24864068 | 17..1104 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:58 Download gff for
BS11916.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20688703..20689790 | 17..1104 | 100 | | Plus |
BS11916.pep Sequence
Translation from 16 to 1104
> BS11916.pep
MTRSSPAWCAGQAWLVWLLASIWIRTCLAQFAVSSSSAGGAVASAGGVTV
VAQLPGFGVINGLINAMHNNNRFNQQPQFERLQQGRPGMGPNRGGMHRPG
FAPPNRQQPTPPGWPPGWQWGAGGNQNQPGFDWVQTGFAPGWNGGGGQGP
GWNGPGWNGGGGRGPPPRPGFNGGGPPPPRPGWNGGGPPPPMPGWNGGGP
PPPRPGWNGGGPPPPRPGWNGGMEQEWDNYPRLPDQPDPNDPNTNWNPDN
ESSTTPQTPIPGPIFPTTTPKPEPTFPTIQPRPTAQPTKDTLIIGTNRPP
LVPPHNPDPPTPTFPTWIVPEPLPKPLDELSENRAIIFPSSSKYIHVPNP
EVPSIPIDVRRR*
BS11916.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:32:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7016-PA | 362 | CG7016-PA | 1..362 | 1..362 | 2129 | 100 | Plus |
| CG9425-PD | 2103 | CG9425-PD | 1292..1520 | 83..322 | 217 | 31.9 | Plus |
| CG9425-PC | 2103 | CG9425-PC | 1292..1520 | 83..322 | 217 | 31.9 | Plus |
| CG9425-PB | 2103 | CG9425-PB | 1292..1520 | 83..322 | 217 | 31.9 | Plus |
| CG15021-PA | 420 | CG15021-PA | 117..371 | 91..326 | 207 | 31.7 | Plus |
