Clone BS11917 Report

Search the DGRC for BS11917

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:119
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptObp56d-RA
Protein status:BS11917.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11917.3prime Sequence

426 bp (426 high quality bases) assembled on 2006-06-16

> BS11917.3prime
ATGGTCTAGAAAGCTTTTAGATGTGGGCGCGATTCTTGTAGTAGCACTCG
AATAGCTGATAGGCAGTATCGCACTTATCCGCTCCCTTGGTGGCATCACA
CTTGGCCTGAACGGCCTTCACGGCATCCTCGCCGGCCAGGGGTCCCAACT
TGGCCAGAACGACATCGGGCTGGACCTCACCATTGATCAGGAATCCGATT
TTCTCCAAGAAACAATTGGCGAAGCATTTCACCTTGGGGTCACTGTCATC
GAAATTGCCGTTTCGCAAGGCGATCGCCTGATCCTTGGTGATTCCCTCCT
GCTGGGCACAAAGGGCGCCATTGGCATGGGCCACAGCCTTCTGCTCATCG
GATAGTTGCAGCTCAGCAGCCGAAATGGCCAAAATGACGGAGAGGACAAT
CAGGAACTTCATGTCGACTGATAACT

BS11917.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG11218-PA 396 Obp56d-RA 1..396 412..17 1980 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:50:54
Subject Length Description Subject Range Query Range Score Percent Strand
Obp56d-RB 922 CG11218-RB 166..561 412..17 1980 100 Minus
Obp56d-RA 591 CG11218-RA 50..445 412..17 1980 100 Minus
Obp56e-RB 529 CG8462-RB 164..448 301..17 255 72.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19703285..19703632 17..364 1740 100 Plus
2R 25286936 2R 19712567..19712851 301..17 255 72.6 Minus
2R 25286936 2R 19703702..19703750 364..412 245 100 Plus
Blast to na_te.dros performed on 2015-02-12 03:50:54 has no hits.

BS11917.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:09 Download gff for BS11917.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11218-PA 1..396 17..412 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:44 Download gff for BS11917.3prime
Subject Subject Range Query Range Percent Splice Strand
Obp56d-RA 50..447 13..412 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:21 Download gff for BS11917.3prime
Subject Subject Range Query Range Percent Splice Strand
Obp56d-RA 50..447 13..412 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:21 Download gff for BS11917.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 19703281..19703632 13..364 99 <- Plus
2R 19703703..19703750 365..412 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:44 Download gff for BS11917.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15590786..15591137 13..364 99 <- Plus
arm_2R 15591208..15591255 365..412 100   Plus

BS11917.5prime Sequence

426 bp (426 high quality bases) assembled on 2006-06-16

> BS11917.5prime
GAAGTTATCAGTCGACATGAAGTTCCTGATTGTCCTCTCCGTCATTTTGG
CCATTTCGGCTGCTGAGCTGCAACTATCCGATGAGCAGAAGGCTGTGGCC
CATGCCAATGGCGCCCTTTGTGCCCAGCAGGAGGGAATCACCAAGGATCA
GGCGATCGCCTTGCGAAACGGCAATTTCGATGACAGTGACCCCAAGGTGA
AATGCTTCGCCAATTGTTTCTTGGAGAAAATCGGATTCCTGATCAATGGT
GAGGTCCAGCCCGATGTCGTTCTGGCCAAGTTGGGACCCCTGGCCGGCGA
GGATGCCGTGAAGGCCGTTCAGGCCAAGTGTGATGCCACCAAGGGAGCGG
ATAAGTGCGATACTGCCTATCAGCTATTCGAGTGCTACTACAAGAATCGC
GCCCACATCTAAAAGCTTTCTAGACC

BS11917.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG11218-PA 396 Obp56d-RA 1..396 17..412 1980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:51:03
Subject Length Description Subject Range Query Range Score Percent Strand
Obp56d-RB 922 CG11218-RB 166..561 17..412 1980 100 Plus
Obp56d-RA 591 CG11218-RA 50..445 17..412 1980 100 Plus
Obp56e-RB 529 CG8462-RB 164..448 128..412 255 72.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19703285..19703632 412..65 1740 100 Minus
2R 25286936 2R 19712567..19712851 128..412 255 72.6 Plus
2R 25286936 2R 19703702..19703750 65..17 245 100 Minus
Blast to na_te.dros performed on 2015-02-02 17:51:00 has no hits.

BS11917.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:09 Download gff for BS11917.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11218-PA 1..396 17..412 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:07 Download gff for BS11917.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp56d-RA 50..447 17..416 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:45 Download gff for BS11917.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp56d-RA 50..447 17..416 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:45 Download gff for BS11917.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19703281..19703632 65..416 99 <- Minus
2R 19703703..19703750 17..64 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:07 Download gff for BS11917.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15590786..15591137 65..416 99 <- Minus
arm_2R 15591208..15591255 17..64 100   Minus

BS11917.complete Sequence

428 bp assembled on 2006-11-01

GenBank Submission: FJ637022

> BS11917.complete
GAAGTTATCAGTCGACATGAAGTTCCTGATTGTCCTCTCCGTCATTTTGG
CCATTTCGGCTGCTGAGCTGCAACTATCCGATGAGCAGAAGGCTGTGGCC
CATGCCAATGGCGCCCTTTGTGCCCAGCAGGAGGGAATCACCAAGGATCA
GGCGATCGCCTTGCGAAACGGCAATTTCGATGACAGTGACCCCAAGGTGA
AATGCTTCGCCAATTGTTTCTTGGAGAAAATCGGATTCCTGATCAATGGT
GAGGTCCAGCCCGATGTCGTTCTGGCCAAGTTGGGACCCCTGGCCGGCGA
GGATGCCGTGAAGGCCGTTCAGGCCAAGTGTGATGCCACCAAGGGAGCGG
ATAAGTGCGATACTGCCTATCAGCTATTCGAGTGCTACTACAAGAATCGC
GCCCACATCTAAAAGCTTTCTAGACCAT

BS11917.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:40:30
Subject Length Description Subject Range Query Range Score Percent Strand
Obp56d-RB 396 CG11218-PB 1..396 17..412 1980 100 Plus
Obp56d-RA 396 CG11218-PA 1..396 17..412 1980 100 Plus
Obp56e-RB 396 CG8462-PB 112..396 128..412 255 72.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
Obp56d-RB 922 CG11218-RB 166..561 17..412 1980 100 Plus
Obp56d-RA 591 CG11218-RA 50..445 17..412 1980 100 Plus
Obp56e-RB 529 CG8462-RB 164..448 128..412 255 72.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:40:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19703285..19703632 412..65 1740 100 Minus
2R 25286936 2R 19712567..19712851 128..412 255 72.6 Plus
2R 25286936 2R 19703702..19703750 65..17 245 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:40:29 has no hits.

BS11917.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:18 Download gff for BS11917.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56d-RA 1..396 17..412 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:33 Download gff for BS11917.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56d-RA 46..443 17..416 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:20:11 Download gff for BS11917.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56d-RA 50..443 17..410 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:18 Download gff for BS11917.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56d-RA 46..443 17..416 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:00 Download gff for BS11917.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56d-RA 50..443 17..410 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:00 Download gff for BS11917.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19703287..19703632 65..410 100 <- Minus
2R 19703703..19703750 17..64 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:20:11 Download gff for BS11917.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15590792..15591137 65..410 100 <- Minus
arm_2R 15591208..15591255 17..64 100   Minus

BS11917.pep Sequence

Translation from 16 to 411

> BS11917.pep
MKFLIVLSVILAISAAELQLSDEQKAVAHANGALCAQQEGITKDQAIALR
NGNFDDSDPKVKCFANCFLEKIGFLINGEVQPDVVLAKLGPLAGEDAVKA
VQAKCDATKGADKCDTAYQLFECYYKNRAHI*

BS11917.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
Obp56d-PB 131 CG11218-PB 1..131 1..131 673 100 Plus
Obp56d-PA 131 CG11218-PA 1..131 1..131 673 100 Plus
Obp56e-PB 131 CG8462-PB 1..129 1..129 448 64.3 Plus
Obp56e-PA 132 CG8462-PA 1..130 1..129 439 63.8 Plus
Obp56a-PA 139 CG11797-PA 5..128 3..124 265 42.7 Plus