Clone Sequence Records
BS11917.3prime Sequence
426 bp (426 high quality bases) assembled on 2006-06-16
> BS11917.3prime
ATGGTCTAGAAAGCTTTTAGATGTGGGCGCGATTCTTGTAGTAGCACTCG
AATAGCTGATAGGCAGTATCGCACTTATCCGCTCCCTTGGTGGCATCACA
CTTGGCCTGAACGGCCTTCACGGCATCCTCGCCGGCCAGGGGTCCCAACT
TGGCCAGAACGACATCGGGCTGGACCTCACCATTGATCAGGAATCCGATT
TTCTCCAAGAAACAATTGGCGAAGCATTTCACCTTGGGGTCACTGTCATC
GAAATTGCCGTTTCGCAAGGCGATCGCCTGATCCTTGGTGATTCCCTCCT
GCTGGGCACAAAGGGCGCCATTGGCATGGGCCACAGCCTTCTGCTCATCG
GATAGTTGCAGCTCAGCAGCCGAAATGGCCAAAATGACGGAGAGGACAAT
CAGGAACTTCATGTCGACTGATAACT
BS11917.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11218-PA | 396 | Obp56d-RA | 1..396 | 412..17 | 1980 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:50:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp56d-RB | 922 | CG11218-RB | 166..561 | 412..17 | 1980 | 100 | Minus |
Obp56d-RA | 591 | CG11218-RA | 50..445 | 412..17 | 1980 | 100 | Minus |
Obp56e-RB | 529 | CG8462-RB | 164..448 | 301..17 | 255 | 72.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:50:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19703285..19703632 | 17..364 | 1740 | 100 | Plus |
2R | 25286936 | 2R | 19712567..19712851 | 301..17 | 255 | 72.6 | Minus |
2R | 25286936 | 2R | 19703702..19703750 | 364..412 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:50:54 has no hits.
BS11917.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:09 Download gff for
BS11917.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11218-PA | 1..396 | 17..412 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:44 Download gff for
BS11917.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56d-RA | 50..447 | 13..412 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:21 Download gff for
BS11917.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56d-RA | 50..447 | 13..412 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:21 Download gff for
BS11917.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19703281..19703632 | 13..364 | 99 | <- | Plus |
2R | 19703703..19703750 | 365..412 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:44 Download gff for
BS11917.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15590786..15591137 | 13..364 | 99 | <- | Plus |
arm_2R | 15591208..15591255 | 365..412 | 100 | | Plus |
BS11917.5prime Sequence
426 bp (426 high quality bases) assembled on 2006-06-16
> BS11917.5prime
GAAGTTATCAGTCGACATGAAGTTCCTGATTGTCCTCTCCGTCATTTTGG
CCATTTCGGCTGCTGAGCTGCAACTATCCGATGAGCAGAAGGCTGTGGCC
CATGCCAATGGCGCCCTTTGTGCCCAGCAGGAGGGAATCACCAAGGATCA
GGCGATCGCCTTGCGAAACGGCAATTTCGATGACAGTGACCCCAAGGTGA
AATGCTTCGCCAATTGTTTCTTGGAGAAAATCGGATTCCTGATCAATGGT
GAGGTCCAGCCCGATGTCGTTCTGGCCAAGTTGGGACCCCTGGCCGGCGA
GGATGCCGTGAAGGCCGTTCAGGCCAAGTGTGATGCCACCAAGGGAGCGG
ATAAGTGCGATACTGCCTATCAGCTATTCGAGTGCTACTACAAGAATCGC
GCCCACATCTAAAAGCTTTCTAGACC
BS11917.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11218-PA | 396 | Obp56d-RA | 1..396 | 17..412 | 1980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:51:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp56d-RB | 922 | CG11218-RB | 166..561 | 17..412 | 1980 | 100 | Plus |
Obp56d-RA | 591 | CG11218-RA | 50..445 | 17..412 | 1980 | 100 | Plus |
Obp56e-RB | 529 | CG8462-RB | 164..448 | 128..412 | 255 | 72.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:50:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19703285..19703632 | 412..65 | 1740 | 100 | Minus |
2R | 25286936 | 2R | 19712567..19712851 | 128..412 | 255 | 72.6 | Plus |
2R | 25286936 | 2R | 19703702..19703750 | 65..17 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:51:00 has no hits.
BS11917.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:09 Download gff for
BS11917.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11218-PA | 1..396 | 17..412 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:07 Download gff for
BS11917.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56d-RA | 50..447 | 17..416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:45 Download gff for
BS11917.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56d-RA | 50..447 | 17..416 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:45 Download gff for
BS11917.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19703281..19703632 | 65..416 | 99 | <- | Minus |
2R | 19703703..19703750 | 17..64 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:07 Download gff for
BS11917.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15590786..15591137 | 65..416 | 99 | <- | Minus |
arm_2R | 15591208..15591255 | 17..64 | 100 | | Minus |
BS11917.complete Sequence
428 bp assembled on 2006-11-01
GenBank Submission: FJ637022
> BS11917.complete
GAAGTTATCAGTCGACATGAAGTTCCTGATTGTCCTCTCCGTCATTTTGG
CCATTTCGGCTGCTGAGCTGCAACTATCCGATGAGCAGAAGGCTGTGGCC
CATGCCAATGGCGCCCTTTGTGCCCAGCAGGAGGGAATCACCAAGGATCA
GGCGATCGCCTTGCGAAACGGCAATTTCGATGACAGTGACCCCAAGGTGA
AATGCTTCGCCAATTGTTTCTTGGAGAAAATCGGATTCCTGATCAATGGT
GAGGTCCAGCCCGATGTCGTTCTGGCCAAGTTGGGACCCCTGGCCGGCGA
GGATGCCGTGAAGGCCGTTCAGGCCAAGTGTGATGCCACCAAGGGAGCGG
ATAAGTGCGATACTGCCTATCAGCTATTCGAGTGCTACTACAAGAATCGC
GCCCACATCTAAAAGCTTTCTAGACCAT
BS11917.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:40:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp56d-RB | 396 | CG11218-PB | 1..396 | 17..412 | 1980 | 100 | Plus |
Obp56d-RA | 396 | CG11218-PA | 1..396 | 17..412 | 1980 | 100 | Plus |
Obp56e-RB | 396 | CG8462-PB | 112..396 | 128..412 | 255 | 72.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:40:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp56d-RB | 922 | CG11218-RB | 166..561 | 17..412 | 1980 | 100 | Plus |
Obp56d-RA | 591 | CG11218-RA | 50..445 | 17..412 | 1980 | 100 | Plus |
Obp56e-RB | 529 | CG8462-RB | 164..448 | 128..412 | 255 | 72.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:40:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19703285..19703632 | 412..65 | 1740 | 100 | Minus |
2R | 25286936 | 2R | 19712567..19712851 | 128..412 | 255 | 72.6 | Plus |
2R | 25286936 | 2R | 19703702..19703750 | 65..17 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:40:29 has no hits.
BS11917.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:18 Download gff for
BS11917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56d-RA | 1..396 | 17..412 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:33 Download gff for
BS11917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56d-RA | 46..443 | 17..416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:20:11 Download gff for
BS11917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56d-RA | 50..443 | 17..410 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:18 Download gff for
BS11917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56d-RA | 46..443 | 17..416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:00 Download gff for
BS11917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56d-RA | 50..443 | 17..410 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:00 Download gff for
BS11917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19703287..19703632 | 65..410 | 100 | <- | Minus |
2R | 19703703..19703750 | 17..64 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:20:11 Download gff for
BS11917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15590792..15591137 | 65..410 | 100 | <- | Minus |
arm_2R | 15591208..15591255 | 17..64 | 100 | | Minus |
BS11917.pep Sequence
Translation from 16 to 411
> BS11917.pep
MKFLIVLSVILAISAAELQLSDEQKAVAHANGALCAQQEGITKDQAIALR
NGNFDDSDPKVKCFANCFLEKIGFLINGEVQPDVVLAKLGPLAGEDAVKA
VQAKCDATKGADKCDTAYQLFECYYKNRAHI*
BS11917.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp56d-PB | 131 | CG11218-PB | 1..131 | 1..131 | 673 | 100 | Plus |
Obp56d-PA | 131 | CG11218-PA | 1..131 | 1..131 | 673 | 100 | Plus |
Obp56e-PB | 131 | CG8462-PB | 1..129 | 1..129 | 448 | 64.3 | Plus |
Obp56e-PA | 132 | CG8462-PA | 1..130 | 1..129 | 439 | 63.8 | Plus |
Obp56a-PA | 139 | CG11797-PA | 5..128 | 3..124 | 265 | 42.7 | Plus |