Clone Sequence Records
BS11925.3prime Sequence
711 bp (711 high quality bases) assembled on 2006-06-16
> BS11925.3prime
ATGGTCTAGAAAGCTTTCAGGCGTAGAACTCGCGGTTATTCGCATTTTTC
GCATACGAATTGTTGGCCGGCGATCTCTTTGGCTCGTCCAGCGCATAGGA
TCCCTCGTCCTTTTTCCTCATGCGGTACACGATGAACATGACCACGAGTA
TGGCGCAGAGCAGGCCAACGACGGCACCGCCAATGACAGCAGCCAGAATT
CCGGGCTGCGAGAAGAAGCTCGACGTGCGATCGTCCTCGCTCATGATGAC
CACTTCGTTGCCGTTGGGCCTGTGATCGATGCCCTTTGTGTCGGAGGGCT
GGCTATTCACGTTCGTATTGGGGTCCAATTCGTGCACGTTGCTGCCACCT
GCGCCCGTGTTTATGCCGGAGTTGCTGCTCTGCGAGATGCGCGTGTTGTG
CGAACTGTGCGAATGCTGATCGGGTTCGGCGTCCTCGTCATCGGGTCCAA
AGCCGGAGCCAGAATAGTCCGGATCTTTCTCTAGATCTTCGTGTATACCG
CCGCGTCCGCCGGATCCCTCGATGCTATCATCGTCGATATAGATTTCATC
ATGGGGCCGAGAAGCTGCTGCTGATGGCGCTGCCGCCGATGGTTTCACCG
ATTTCTGATCTTGAGCGTGGGTGGCGGCTACCAGAACTCCGATGAGAATT
GCGACTAGCAATAGCGGCTCTACGGAAATCTTCTGCTTTGGCTTCATGTC
GACTGATAACT
BS11925.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10497-PB | 681 | Sdc-RB | 1..681 | 697..17 | 3380 | 99.8 | Minus |
| CG10497-PC | 681 | Sdc-RC | 1..681 | 697..17 | 3380 | 99.8 | Minus |
| CG10497-PA | 1200 | Sdc-RA | 1..341 | 697..357 | 1705 | 100 | Minus |
| CG10497-PA | 1200 | Sdc-RA | 865..1200 | 352..17 | 1680 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:41:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sdc-RB | 1985 | CG10497-RB | 359..1039 | 697..17 | 3390 | 99.9 | Minus |
| Sdc-RG | 2944 | CG10497-RG | 195..783 | 605..17 | 2930 | 99.8 | Minus |
| Sdc-RD | 1869 | CG10497-RD | 337..677 | 697..357 | 1705 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:41:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21394563..21394736 | 17..190 | 870 | 100 | Plus |
| 2R | 25286936 | 2R | 21394878..21395045 | 190..357 | 825 | 99.4 | Plus |
| 2R | 25286936 | 2R | 21399175..21399313 | 358..496 | 695 | 100 | Plus |
| 2R | 25286936 | 2R | 21412311..21412421 | 497..607 | 555 | 100 | Plus |
| 2R | 25286936 | 2R | 21480091..21480183 | 605..697 | 465 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 17:41:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dfun\Isfun-1 | 928 | Dfun\Isfun-1 DFU309320 928bp Derived from AJ309320 (Rel. 68, Last updated, Version 1). | 458..506 | 23..71 | 110 | 69.4 | Plus |
BS11925.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:09 Download gff for
BS11925.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10497-PC | 1..681 | 17..697 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:18 Download gff for
BS11925.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sdc-RB | 359..1039 | 17..697 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:49:48 Download gff for
BS11925.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sdc-RB | 359..1039 | 17..697 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:49:48 Download gff for
BS11925.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21394563..21394735 | 17..189 | 100 | <- | Plus |
| 2R | 21394878..21395045 | 190..357 | 99 | <- | Plus |
| 2R | 21399175..21399313 | 358..496 | 100 | <- | Plus |
| 2R | 21412311..21412418 | 497..604 | 100 | <- | Plus |
| 2R | 21480091..21480183 | 605..697 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:18 Download gff for
BS11925.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17367596..17367688 | 605..697 | 100 | | Plus |
| arm_2R | 17282068..17282240 | 17..189 | 100 | <- | Plus |
| arm_2R | 17282383..17282550 | 190..357 | 99 | <- | Plus |
| arm_2R | 17286680..17286818 | 358..496 | 100 | <- | Plus |
| arm_2R | 17299816..17299923 | 497..604 | 100 | <- | Plus |
BS11925.5prime Sequence
711 bp (651 high quality bases) assembled on 2006-06-16
> BS11925.5prime
GAAGTTATCAGTCGACATGAAGCCAAAGCAGAAGATTTCCGTAGAGCCGC
TATTGCTAGTCGCAATTCTCATCGGAGTTCTGGTAGCCGCCACCCACGCT
CAAGATCAGAAATCGGTGAAACCATCGGCGGCAGCGCCATCAGCAGCAGC
TTCTCGGCCCCATGATGAAATCTATATCGACGATGATAGCATCGAGGGAT
CCGGCGGACGCGGCGGTATACACGAAGATCTAGAGAAAGATCCGGACTAT
TCTGGCTCCGGCTTTGGACCCGATGACGAGGACGCCGAACCCGATCAGCA
TTCGCACAGTTCGCACAACACGCGCATCTCGCAGAGCAGCAACTCCGGCA
TAAACACGGGCGCAGGTGGCAGCAACGTGCACGAATTGGACCCCAATACG
AACGTGAATAGCCAGCCCTCCGACACAAAGGGCATCGATCACAGGCCCAA
CGGCAACGAAGTGGTCATCATGAGCGAGGACGATCGCACGTCGAGCTTCT
TCTCGCAGCCCGGAATTCTGGCTGCTGTCATTGGCGGTGCCGTCGTTGGC
CTGCTCTGCGCCATACTCGTGGTCATGTTCATCGTGTACCGCATGAGGAA
AAAGGACGAGGGATCCTATGCGCTGGACGAGCCAAAGAGATCGCCGGCCA
ACAATTCGTATGCGAAAAATGCGAATAACCGCGAGTTCTACGCCTGAAAG
CTTTCTAGACC
BS11925.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10497-PB | 681 | Sdc-RB | 1..681 | 17..697 | 3380 | 99.8 | Plus |
| CG10497-PC | 681 | Sdc-RC | 1..681 | 17..697 | 3380 | 99.8 | Plus |
| CG10497-PA | 1200 | Sdc-RA | 1..341 | 17..357 | 1705 | 100 | Plus |
| CG10497-PA | 1200 | Sdc-RA | 865..1200 | 362..697 | 1680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 08:06:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sdc-RB | 1985 | CG10497-RB | 359..1039 | 17..697 | 3390 | 99.9 | Plus |
| Sdc-RG | 2944 | CG10497-RG | 195..783 | 109..697 | 2930 | 99.8 | Plus |
| Sdc-RD | 1869 | CG10497-RD | 337..677 | 17..357 | 1705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 08:06:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21394563..21394736 | 697..524 | 870 | 100 | Minus |
| 2R | 25286936 | 2R | 21394878..21395045 | 524..357 | 825 | 99.4 | Minus |
| 2R | 25286936 | 2R | 21399175..21399313 | 356..218 | 695 | 100 | Minus |
| 2R | 25286936 | 2R | 21412311..21412421 | 217..107 | 555 | 100 | Minus |
| 2R | 25286936 | 2R | 21480091..21480183 | 109..17 | 465 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 08:06:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dfun\Isfun-1 | 928 | Dfun\Isfun-1 DFU309320 928bp Derived from AJ309320 (Rel. 68, Last updated, Version 1). | 458..506 | 691..643 | 110 | 69.4 | Minus |
BS11925.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:10 Download gff for
BS11925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10497-PC | 1..681 | 17..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 13:18:49 Download gff for
BS11925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sdc-RB | 359..1039 | 17..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:51:23 Download gff for
BS11925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sdc-RB | 359..1039 | 17..697 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:51:23 Download gff for
BS11925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21399175..21399313 | 218..356 | 100 | <- | Minus |
| 2R | 21412311..21412418 | 110..217 | 100 | <- | Minus |
| 2R | 21480091..21480183 | 17..109 | 100 | | Minus |
| 2R | 21394563..21394735 | 525..697 | 100 | <- | Minus |
| 2R | 21394878..21395045 | 357..524 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 13:18:49 Download gff for
BS11925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17367596..17367688 | 17..109 | 100 | | Minus |
| arm_2R | 17282068..17282240 | 525..697 | 100 | <- | Minus |
| arm_2R | 17282383..17282550 | 357..524 | 99 | <- | Minus |
| arm_2R | 17286680..17286818 | 218..356 | 100 | <- | Minus |
| arm_2R | 17299816..17299923 | 110..217 | 100 | <- | Minus |
BS11925.complete Sequence
713 bp assembled on 2006-11-01
GenBank Submission: FJ637023
> BS11925.complete
GAAGTTATCAGTCGACATGAAGCCAAAGCAGAAGATTTCCGTAGAGCCGC
TATTGCTAGTCGCAATTCTCATCGGAGTTCTGGTAGCCGCCACCCACGCT
CAAGATCAGAAATCGGTGAAACCATCGGCGGCAGCGCCATCAGCAGCAGC
TTCTCGGCCCCATGATGAAATCTATATCGACGATGATAGCATCGAGGGAT
CCGGCGGACGCGGCGGTATACACGAAGATCTAGAGAAAGATCCGGACTAT
TCTGGCTCCGGCTTTGGACCCGATGACGAGGACGCCGAACCCGATCAGCA
TTCGCACAGTTCGCACAACACGCGCATCTCGCAGAGCAGCAACTCCGGCA
TAAACACGGGCGCAGGTGGCAGCAACGTGCACGAATTGGACCCCAATACG
AACGTGAATAGCCAGCCCTCCGACACAAAGGGCATCGATCACAGGCCCAA
CGGCAACGAAGTGGTCATCATGAGCGAGGACGATCGCACGTCGAGCTTCT
TCTCGCAGCCCGGAATTCTGGCTGCTGTCATTGGCGGTGCCGTCGTTGGC
CTGCTCTGCGCCATACTCGTGGTCATGTTCATCGTGTACCGCATGAGGAA
AAAGGACGAGGGATCCTATGCGCTGGACGAGCCAAAGAGATCGCCGGCCA
ACAATTCGTATGCGAAAAATGCGAATAACCGCGAGTTCTACGCCTGAAAG
CTTTCTAGACCAT
BS11925.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:01:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sdc-RB | 681 | CG10497-PB | 1..681 | 17..697 | 3390 | 99.9 | Plus |
| Sdc-RD | 1197 | CG10497-PD | 1..341 | 17..357 | 1705 | 100 | Plus |
| Sdc-RA | 1200 | CG10497-PA | 1..341 | 17..357 | 1705 | 100 | Plus |
| Sdc-RD | 1197 | CG10497-PD | 857..1197 | 357..697 | 1690 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:01:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sdc-RB | 1985 | CG10497-RB | 359..1039 | 17..697 | 3390 | 99.9 | Plus |
| Sdc-RG | 2944 | CG10497-RG | 195..783 | 109..697 | 2930 | 99.8 | Plus |
| Sdc-RD | 1869 | CG10497-RD | 337..677 | 17..357 | 1705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:01:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21394563..21394736 | 697..524 | 870 | 100 | Minus |
| 2R | 25286936 | 2R | 21394878..21395045 | 524..357 | 825 | 99.4 | Minus |
| 2R | 25286936 | 2R | 21399175..21399313 | 356..218 | 695 | 100 | Minus |
| 2R | 25286936 | 2R | 21412311..21412421 | 217..107 | 555 | 100 | Minus |
| 2R | 25286936 | 2R | 21480091..21480183 | 109..17 | 465 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 05:01:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dfun\Isfun-1 | 928 | Dfun\Isfun-1 DFU309320 928bp Derived from AJ309320 (Rel. 68, Last updated, Version 1). | 458..506 | 691..643 | 110 | 69.4 | Minus |
BS11925.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:20 Download gff for
BS11925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sdc-RB | 1..681 | 17..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:40:37 Download gff for
BS11925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sdc-RB | 351..1030 | 17..696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:56 Download gff for
BS11925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sdc-RB | 359..1038 | 17..696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:20 Download gff for
BS11925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sdc-RB | 351..1031 | 17..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:02:32 Download gff for
BS11925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sdc-RB | 359..1038 | 17..696 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:02:32 Download gff for
BS11925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21399175..21399313 | 218..356 | 100 | <- | Minus |
| 2R | 21412311..21412418 | 110..217 | 100 | <- | Minus |
| 2R | 21480091..21480183 | 17..109 | 100 | | Minus |
| 2R | 21394564..21394735 | 525..696 | 100 | <- | Minus |
| 2R | 21394878..21395045 | 357..524 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:56 Download gff for
BS11925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17282069..17282240 | 525..696 | 100 | <- | Minus |
| arm_2R | 17282383..17282550 | 357..524 | 99 | <- | Minus |
| arm_2R | 17286680..17286818 | 218..356 | 100 | <- | Minus |
| arm_2R | 17299816..17299923 | 110..217 | 100 | <- | Minus |
| arm_2R | 17367596..17367688 | 17..109 | 100 | | Minus |
BS11925.pep Sequence
Translation from 16 to 696
> BS11925.pep
MKPKQKISVEPLLLVAILIGVLVAATHAQDQKSVKPSAAAPSAAASRPHD
EIYIDDDSIEGSGGRGGIHEDLEKDPDYSGSGFGPDDEDAEPDQHSHSSH
NTRISQSSNSGINTGAGGSNVHELDPNTNVNSQPSDTKGIDHRPNGNEVV
IMSEDDRTSSFFSQPGILAAVIGGAVVGLLCAILVVMFIVYRMRKKDEGS
YALDEPKRSPANNSYAKNANNREFYA*
BS11925.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sdc-PB | 226 | CG10497-PB | 1..226 | 1..226 | 1167 | 100 | Plus |
| Sdc-PK | 322 | CG10497-PK | 1..141 | 1..147 | 598 | 83 | Plus |
| Sdc-PI | 494 | CG10497-PI | 1..141 | 1..147 | 598 | 83 | Plus |
| Sdc-PA | 399 | CG10497-PA | 1..132 | 1..132 | 592 | 87.9 | Plus |
| Sdc-PK | 322 | CG10497-PK | 203..322 | 109..226 | 586 | 95.8 | Plus |
| Sdc-PH | 266 | CG10497-PH | 120..266 | 57..226 | 582 | 72.9 | Plus |
| Sdc-PA | 399 | CG10497-PA | 253..399 | 57..226 | 582 | 72.9 | Plus |
