Clone Sequence Records
BS11931.3prime Sequence
453 bp (453 high quality bases) assembled on 2006-06-16
> BS11931.3prime
ATGGTCTAGAAAGCTTTCAGACCACCTTCACCTGGCTGACGTCCCGCTTC
TCGATCATGCGCATCTGTTTCTTCTTCATGCGCTTCAGCTTGGCGGGATT
CTTGATGACCTGGACGACCTCCGAGCGGCGCTCGTTCGCCAGCCGGCGCT
CGGCATTCTCCACGCGGCGCTGGTGCTTTTGGACGGCATCCTCCTTGCGC
TTGTCCTTGATCTCCTTGGAGCGCTCCTTGATGTAGCGCAGCTCGTCGCG
CAGGGCCGTCTTCTTTTCGAAGGACAGTCGGTTAACGGTCTTCTTAATCT
TGCTAAATTTCTGCTTGGGCGTCTTCCACGGCCGGTTCGACTTGGGCTGG
CCGCGTGGTATGCTGTTCTCCGGCTTTGCCGCCTTCTTGGCCTTTGCCGG
CTTCTTGGCTGGCACAGTTTCCGGTGCGGATTCACTCATGTCGACTGATA
ACT
BS11931.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14210-PA | 423 | CG14210-RA | 1..423 | 439..17 | 2115 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:51:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14210-RB | 559 | CG14210-RB | 81..503 | 439..17 | 2115 | 100 | Minus |
CG14210-RA | 567 | CG14210-RA | 81..503 | 439..17 | 2115 | 100 | Minus |
CG12788-RC | 1704 | CG12788-RC | 1606..1704 | 17..115 | 495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:50:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19616470..19616761 | 308..17 | 1460 | 100 | Minus |
X | 23542271 | X | 19616276..19616406 | 439..309 | 655 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:50:59 has no hits.
BS11931.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:12 Download gff for
BS11931.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14210-PA | 1..423 | 17..439 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:07:56 Download gff for
BS11931.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14210-RA | 81..503 | 17..439 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:28:34 Download gff for
BS11931.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14210-RA | 81..503 | 17..439 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:28:34 Download gff for
BS11931.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19616281..19616406 | 309..434 | 100 | -> | Minus |
X | 19616470..19616761 | 17..308 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:07:56 Download gff for
BS11931.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19510314..19510439 | 309..434 | 100 | -> | Minus |
arm_X | 19510503..19510794 | 17..308 | 100 | | Minus |
BS11931.5prime Sequence
453 bp (453 high quality bases) assembled on 2006-06-16
> BS11931.5prime
GAAGTTATCAGTCGACATGAGTGAATCCGCACCGGAAACTGTGCCAGCCA
AGAAGCCGGCAAAGGCCAAGAAGGCGGCAAAGCCGGAGAACAGCATACCA
CGCGGCCAGCCCAAGTCGAACCGGCCGTGGAAGACGCCCAAGCAGAAATT
TAGCAAGATTAAGAAGACCGTTAACCGACTGTCCTTCGAAAAGAAGACGG
CCCTGCGCGACGAGCTGCGCTACATCAAGGAGCGCTCCAAGGAGATCAAG
GACAAGCGCAAGGAGGATGCCGTCCAAAAGCACCAGCGCCGCGTGGAGAA
TGCCGAGCGCCGGCTGGCGAACGAGCGCCGCTCGGAGGTCGTCCAGGTCA
TCAAGAATCCCGCCAAGCTGAAGCGCATGAAGAAGAAACAGATGCGCATG
ATCGAGAAGCGGGACGTCAGCCAGGTGAAGGTGGTCTGAAAGCTTTCTAG
ACC
BS11931.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14210-PA | 423 | CG14210-RA | 1..423 | 17..439 | 2115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:35:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14210-RB | 559 | CG14210-RB | 81..503 | 17..439 | 2115 | 100 | Plus |
CG14210-RA | 567 | CG14210-RA | 81..503 | 17..439 | 2115 | 100 | Plus |
CG12788-RC | 1704 | CG12788-RC | 1606..1704 | 439..341 | 495 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:35:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19616470..19616761 | 148..439 | 1460 | 100 | Plus |
X | 23542271 | X | 19616276..19616406 | 17..147 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:35:40 has no hits.
BS11931.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:12 Download gff for
BS11931.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14210-PA | 1..423 | 17..439 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:35:15 Download gff for
BS11931.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14210-RA | 81..503 | 17..439 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:40:47 Download gff for
BS11931.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14210-RA | 81..503 | 17..439 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:40:47 Download gff for
BS11931.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19616281..19616406 | 22..147 | 100 | -> | Plus |
X | 19616470..19616761 | 148..439 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:35:15 Download gff for
BS11931.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19510314..19510439 | 22..147 | 100 | -> | Plus |
arm_X | 19510503..19510794 | 148..439 | 100 | | Plus |
BS11931.complete Sequence
455 bp assembled on 2006-11-01
GenBank Submission: FJ637024
> BS11931.complete
GAAGTTATCAGTCGACATGAGTGAATCCGCACCGGAAACTGTGCCAGCCA
AGAAGCCGGCAAAGGCCAAGAAGGCGGCAAAGCCGGAGAACAGCATACCA
CGCGGCCAGCCCAAGTCGAACCGGCCGTGGAAGACGCCCAAGCAGAAATT
TAGCAAGATTAAGAAGACCGTTAACCGACTGTCCTTCGAAAAGAAGACGG
CCCTGCGCGACGAGCTGCGCTACATCAAGGAGCGCTCCAAGGAGATCAAG
GACAAGCGCAAGGAGGATGCCGTCCAAAAGCACCAGCGCCGCGTGGAGAA
TGCCGAGCGCCGGCTGGCGAACGAGCGCCGCTCGGAGGTCGTCCAGGTCA
TCAAGAATCCCGCCAAGCTGAAGCGCATGAAGAAGAAACAGATGCGCATG
ATCGAGAAGCGGGACGTCAGCCAGGTGAAGGTGGTCTGAAAGCTTTCTAG
ACCAT
BS11931.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:43:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14210-RB | 423 | CG14210-PB | 1..423 | 17..439 | 2115 | 100 | Plus |
CG14210-RA | 423 | CG14210-PA | 1..423 | 17..439 | 2115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:43:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14210-RB | 559 | CG14210-RB | 81..503 | 17..439 | 2115 | 100 | Plus |
CG14210-RA | 567 | CG14210-RA | 81..503 | 17..439 | 2115 | 100 | Plus |
CG12788-RC | 1704 | CG12788-RC | 1606..1704 | 439..341 | 495 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:43:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19616470..19616761 | 148..439 | 1460 | 100 | Plus |
X | 23542271 | X | 19616276..19616406 | 17..147 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:43:34 has no hits.
BS11931.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:21 Download gff for
BS11931.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14210-RA | 1..423 | 17..439 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:36 Download gff for
BS11931.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14210-RA | 70..492 | 17..439 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:57 Download gff for
BS11931.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14210-RA | 81..502 | 17..438 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:57 Download gff for
BS11931.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14210-RA | 81..502 | 17..438 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:57 Download gff for
BS11931.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19616276..19616406 | 17..147 | 100 | -> | Plus |
X | 19616470..19616760 | 148..438 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:57 Download gff for
BS11931.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19510309..19510439 | 17..147 | 100 | -> | Plus |
arm_X | 19510503..19510793 | 148..438 | 100 | | Plus |
BS11931.pep Sequence
Translation from 16 to 438
> BS11931.pep
MSESAPETVPAKKPAKAKKAAKPENSIPRGQPKSNRPWKTPKQKFSKIKK
TVNRLSFEKKTALRDELRYIKERSKEIKDKRKEDAVQKHQRRVENAERRL
ANERRSEVVQVIKNPAKLKRMKKKQMRMIEKRDVSQVKVV*
BS11931.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14210-PB | 140 | CG14210-PB | 1..140 | 1..140 | 700 | 100 | Plus |
CG14210-PA | 140 | CG14210-PA | 1..140 | 1..140 | 700 | 100 | Plus |