Clone BS11931 Report

Search the DGRC for BS11931

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:119
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptCG14210-RA
Protein status:BS11931.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11931.3prime Sequence

453 bp (453 high quality bases) assembled on 2006-06-16

> BS11931.3prime
ATGGTCTAGAAAGCTTTCAGACCACCTTCACCTGGCTGACGTCCCGCTTC
TCGATCATGCGCATCTGTTTCTTCTTCATGCGCTTCAGCTTGGCGGGATT
CTTGATGACCTGGACGACCTCCGAGCGGCGCTCGTTCGCCAGCCGGCGCT
CGGCATTCTCCACGCGGCGCTGGTGCTTTTGGACGGCATCCTCCTTGCGC
TTGTCCTTGATCTCCTTGGAGCGCTCCTTGATGTAGCGCAGCTCGTCGCG
CAGGGCCGTCTTCTTTTCGAAGGACAGTCGGTTAACGGTCTTCTTAATCT
TGCTAAATTTCTGCTTGGGCGTCTTCCACGGCCGGTTCGACTTGGGCTGG
CCGCGTGGTATGCTGTTCTCCGGCTTTGCCGCCTTCTTGGCCTTTGCCGG
CTTCTTGGCTGGCACAGTTTCCGGTGCGGATTCACTCATGTCGACTGATA
ACT

BS11931.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG14210-PA 423 CG14210-RA 1..423 439..17 2115 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:51:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG14210-RB 559 CG14210-RB 81..503 439..17 2115 100 Minus
CG14210-RA 567 CG14210-RA 81..503 439..17 2115 100 Minus
CG12788-RC 1704 CG12788-RC 1606..1704 17..115 495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19616470..19616761 308..17 1460 100 Minus
X 23542271 X 19616276..19616406 439..309 655 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:50:59 has no hits.

BS11931.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:12 Download gff for BS11931.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14210-PA 1..423 17..439 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:07:56 Download gff for BS11931.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14210-RA 81..503 17..439 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:28:34 Download gff for BS11931.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14210-RA 81..503 17..439 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:28:34 Download gff for BS11931.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19616281..19616406 309..434 100 -> Minus
X 19616470..19616761 17..308 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:07:56 Download gff for BS11931.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19510314..19510439 309..434 100 -> Minus
arm_X 19510503..19510794 17..308 100   Minus

BS11931.5prime Sequence

453 bp (453 high quality bases) assembled on 2006-06-16

> BS11931.5prime
GAAGTTATCAGTCGACATGAGTGAATCCGCACCGGAAACTGTGCCAGCCA
AGAAGCCGGCAAAGGCCAAGAAGGCGGCAAAGCCGGAGAACAGCATACCA
CGCGGCCAGCCCAAGTCGAACCGGCCGTGGAAGACGCCCAAGCAGAAATT
TAGCAAGATTAAGAAGACCGTTAACCGACTGTCCTTCGAAAAGAAGACGG
CCCTGCGCGACGAGCTGCGCTACATCAAGGAGCGCTCCAAGGAGATCAAG
GACAAGCGCAAGGAGGATGCCGTCCAAAAGCACCAGCGCCGCGTGGAGAA
TGCCGAGCGCCGGCTGGCGAACGAGCGCCGCTCGGAGGTCGTCCAGGTCA
TCAAGAATCCCGCCAAGCTGAAGCGCATGAAGAAGAAACAGATGCGCATG
ATCGAGAAGCGGGACGTCAGCCAGGTGAAGGTGGTCTGAAAGCTTTCTAG
ACC

BS11931.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG14210-PA 423 CG14210-RA 1..423 17..439 2115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:35:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG14210-RB 559 CG14210-RB 81..503 17..439 2115 100 Plus
CG14210-RA 567 CG14210-RA 81..503 17..439 2115 100 Plus
CG12788-RC 1704 CG12788-RC 1606..1704 439..341 495 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:35:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19616470..19616761 148..439 1460 100 Plus
X 23542271 X 19616276..19616406 17..147 655 100 Plus
Blast to na_te.dros performed on 2015-02-08 11:35:40 has no hits.

BS11931.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:12 Download gff for BS11931.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14210-PA 1..423 17..439 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:35:15 Download gff for BS11931.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14210-RA 81..503 17..439 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:40:47 Download gff for BS11931.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14210-RA 81..503 17..439 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:40:47 Download gff for BS11931.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19616281..19616406 22..147 100 -> Plus
X 19616470..19616761 148..439 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:35:15 Download gff for BS11931.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19510314..19510439 22..147 100 -> Plus
arm_X 19510503..19510794 148..439 100   Plus

BS11931.complete Sequence

455 bp assembled on 2006-11-01

GenBank Submission: FJ637024

> BS11931.complete
GAAGTTATCAGTCGACATGAGTGAATCCGCACCGGAAACTGTGCCAGCCA
AGAAGCCGGCAAAGGCCAAGAAGGCGGCAAAGCCGGAGAACAGCATACCA
CGCGGCCAGCCCAAGTCGAACCGGCCGTGGAAGACGCCCAAGCAGAAATT
TAGCAAGATTAAGAAGACCGTTAACCGACTGTCCTTCGAAAAGAAGACGG
CCCTGCGCGACGAGCTGCGCTACATCAAGGAGCGCTCCAAGGAGATCAAG
GACAAGCGCAAGGAGGATGCCGTCCAAAAGCACCAGCGCCGCGTGGAGAA
TGCCGAGCGCCGGCTGGCGAACGAGCGCCGCTCGGAGGTCGTCCAGGTCA
TCAAGAATCCCGCCAAGCTGAAGCGCATGAAGAAGAAACAGATGCGCATG
ATCGAGAAGCGGGACGTCAGCCAGGTGAAGGTGGTCTGAAAGCTTTCTAG
ACCAT

BS11931.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG14210-RB 423 CG14210-PB 1..423 17..439 2115 100 Plus
CG14210-RA 423 CG14210-PA 1..423 17..439 2115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG14210-RB 559 CG14210-RB 81..503 17..439 2115 100 Plus
CG14210-RA 567 CG14210-RA 81..503 17..439 2115 100 Plus
CG12788-RC 1704 CG12788-RC 1606..1704 439..341 495 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:43:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19616470..19616761 148..439 1460 100 Plus
X 23542271 X 19616276..19616406 17..147 655 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:43:34 has no hits.

BS11931.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:21 Download gff for BS11931.complete
Subject Subject Range Query Range Percent Splice Strand
CG14210-RA 1..423 17..439 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:36 Download gff for BS11931.complete
Subject Subject Range Query Range Percent Splice Strand
CG14210-RA 70..492 17..439 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:57 Download gff for BS11931.complete
Subject Subject Range Query Range Percent Splice Strand
CG14210-RA 81..502 17..438 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:57 Download gff for BS11931.complete
Subject Subject Range Query Range Percent Splice Strand
CG14210-RA 81..502 17..438 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:57 Download gff for BS11931.complete
Subject Subject Range Query Range Percent Splice Strand
X 19616276..19616406 17..147 100 -> Plus
X 19616470..19616760 148..438 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:57 Download gff for BS11931.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19510309..19510439 17..147 100 -> Plus
arm_X 19510503..19510793 148..438 100   Plus

BS11931.pep Sequence

Translation from 16 to 438

> BS11931.pep
MSESAPETVPAKKPAKAKKAAKPENSIPRGQPKSNRPWKTPKQKFSKIKK
TVNRLSFEKKTALRDELRYIKERSKEIKDKRKEDAVQKHQRRVENAERRL
ANERRSEVVQVIKNPAKLKRMKKKQMRMIEKRDVSQVKVV*

BS11931.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG14210-PB 140 CG14210-PB 1..140 1..140 700 100 Plus
CG14210-PA 140 CG14210-PA 1..140 1..140 700 100 Plus