BS11933.complete Sequence
983 bp assembled on 2006-11-01
GenBank Submission: FJ637025
> BS11933.complete
GAAGTTATCAGTCGACATGGAGCCCAACGATGAGGTGGTGGAGCGACAGA
AGCTGGTGAACGACGTGGAAACGGAGGAGGAAGCCCAAAGCGCACCGAAA
TCGGCCACACCCGCCTCGCCCGCCGTTCCGAATATCAAAATCAAAGGCAT
ATCCAGCGGCGAGACCACTCGCAGCAGAAACTCGGCCTCCTGCTCCATCG
AGAGGACGATATCCGAAAAGGAGAAGGACAAGAGCCAGGGCCAGGGTCAA
GCGGCCACCAAGGTGACCTATGTGAATGAGCGCCGGCCACGCCCGCAGGC
GCACGGCGGCAGTGGCGGGGGTGCCGGCGACGAAAGATTCGAGTTCAAGA
CCCGGCCGCGCAAACTCCTGAAAGATCGTGATGAGTTGGAACCCACCACC
AACAGTGCCAACAGCCTGAACGCCATCACCTTGGTGAGCAGCGAGTGGCT
AGCACCTGATCCCACAGCCACAGACAATCACAACACCCCCAAGAACAACA
ACAACGATAGCACGAAACCCAACAATAACAATCAGCACAGCAATAGCAAT
CAGAACACACCGCGATTGCAGCGCCGCAAGAATCCCACAGCGTCGATGCC
AAACGCCAGTGCCCACAGCGATAAGTTCGACGATCGTCCAATAAAACATC
ATTCCTTTGTCTCCGAAGTTCCCGATGTTAAGCACATGGAAAGAGCTCTC
CTCGGACTGCTGGACGACTTTCACTCCGGCAAGCTGAGGGCATTCGGCTC
CGGCTGCACAATGGACCAGATGACCAAGATTCGCGAGCAGCAGGAGAGCC
TGGCCAAATTGCATTTCGAACTGGCTGCCGCCGAGGAGGATTCGCTGGAG
CACGGCAACGAGTTCAACACCAACAAGGCGCAGGAGAACATGCTGCAGCT
GATGCAGCGCCTGGAACAGCTATCCATCTCCATCGAGCAGCTGCAGACGA
GCCACACGGGTCTCTGAAAGCTTTCTAGACCAT
BS11933.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:54:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10874-RA | 951 | CG10874-PA | 1..951 | 17..967 | 4755 | 100 | Plus |
| CG10874-RD | 954 | CG10874-PD | 1..954 | 17..967 | 4690 | 99.7 | Plus |
| CG10874-RC | 660 | CG10874-PC | 1..358 | 17..374 | 1790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:54:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10874-RA | 1583 | CG10874-RA | 124..1074 | 17..967 | 4755 | 100 | Plus |
| CG10874-RD | 1586 | CG10874-RD | 124..1077 | 17..967 | 4690 | 99.7 | Plus |
| CG10874-RC | 1292 | CG10874-RC | 124..481 | 17..374 | 1790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:54:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2190706..2191080 | 747..373 | 1875 | 100 | Minus |
| 2L | 23513712 | 2L | 2191850..2192090 | 374..134 | 1205 | 100 | Minus |
| 2L | 23513712 | 2L | 2190423..2190644 | 967..746 | 1110 | 100 | Minus |
| 2L | 23513712 | 2L | 2192147..2192263 | 133..17 | 585 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:54:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2474 | 394..549 | 201 | 62.7 | Plus |
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2492..2681 | 363..549 | 176 | 57.6 | Plus |
BS11933.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:24 Download gff for
BS11933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10874-RA | 1..951 | 17..967 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:39 Download gff for
BS11933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10874-RA | 101..1065 | 7..974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:06:01 Download gff for
BS11933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10874-RA | 124..1073 | 17..966 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:24 Download gff for
BS11933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10874-RA | 101..1065 | 7..974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:34 Download gff for
BS11933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10874-RA | 124..1073 | 17..966 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:34 Download gff for
BS11933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2190707..2191078 | 375..746 | 100 | <- | Minus |
| 2L | 2191850..2192090 | 134..374 | 100 | <- | Minus |
| 2L | 2190424..2190643 | 747..966 | 100 | <- | Minus |
| 2L | 2192147..2192263 | 17..133 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:06:01 Download gff for
BS11933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2190424..2190643 | 747..966 | 100 | <- | Minus |
| arm_2L | 2190707..2191078 | 375..746 | 100 | <- | Minus |
| arm_2L | 2191850..2192090 | 134..374 | 100 | <- | Minus |
| arm_2L | 2192147..2192263 | 17..133 | 100 | | Minus |
BS11933.pep Sequence
Translation from 16 to 966
> BS11933.pep
MEPNDEVVERQKLVNDVETEEEAQSAPKSATPASPAVPNIKIKGISSGET
TRSRNSASCSIERTISEKEKDKSQGQGQAATKVTYVNERRPRPQAHGGSG
GGAGDERFEFKTRPRKLLKDRDELEPTTNSANSLNAITLVSSEWLAPDPT
ATDNHNTPKNNNNDSTKPNNNNQHSNSNQNTPRLQRRKNPTASMPNASAH
SDKFDDRPIKHHSFVSEVPDVKHMERALLGLLDDFHSGKLRAFGSGCTMD
QMTKIREQQESLAKLHFELAAAEEDSLEHGNEFNTNKAQENMLQLMQRLE
QLSISIEQLQTSHTGL*
BS11933.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10874-PA | 316 | CG10874-PA | 1..316 | 1..316 | 1634 | 100 | Plus |
| CG10874-PD | 317 | CG10874-PD | 1..317 | 1..316 | 1622 | 99.7 | Plus |
| CG10874-PB | 218 | CG10874-PB | 1..122 | 1..122 | 605 | 98.4 | Plus |
| CG10874-PC | 219 | CG10874-PC | 1..122 | 1..122 | 605 | 98.4 | Plus |
| CG10874-PB | 218 | CG10874-PB | 66..218 | 163..316 | 514 | 70.7 | Plus |
| CG10874-PC | 219 | CG10874-PC | 66..219 | 163..316 | 502 | 70.3 | Plus |
