Clone BS11935 Report

Search the DGRC for BS11935

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:119
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCG14898-RA
Protein status:BS11935.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11935.3prime Sequence

393 bp (393 high quality bases) assembled on 2006-06-16

> BS11935.3prime
ATGGTCTAGAAAGCTTTTATTTGCCTTGCGCATCTTCTACTCCCTTGGCC
GCCAGCATCAGCTCGTATAGTTGGACTACTTGGTCGTCTTTCAACATTTC
TACAGTCTTGGGGTCAATCTCTTCGCCCAGCTCTCCCTTGGGCTTGCCCC
GAATCCCTAGTTGTTGGGTGATTGTGGACGCATATCGGGCCCACTCTGTC
ATAAAGAGCTGTGCCTCCATGGGATTGCACTTGAGGTGTCGCCGGAACTC
GTCCCGCACATAGTTATCGCCCAGAGCACGAAGTTCCGCTGGAAGTCCTC
TGTGCAGTCGCAAGATCGTTTTGTACAGCAGTCGGACCCTCTGAGGGTGG
GTCAGTTGGCTCATCAAAATTCTGGACATGTCGACTGATAACT

BS11935.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG14898-PA 363 CG14898-RA 1..363 379..17 1815 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG14898-RA 470 CG14898-RA 92..455 379..16 1820 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16481876..16482047 16..187 860 100 Plus
3R 32079331 3R 16482104..16482215 188..299 560 100 Plus
3R 32079331 3R 16482279..16482361 297..379 415 100 Plus
Blast to na_te.dros performed on 2015-02-12 03:47:16 has no hits.

BS11935.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:13 Download gff for BS11935.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14898-PA 1..363 17..379 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:29:37 Download gff for BS11935.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14898-RA 87..455 16..388 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:40 Download gff for BS11935.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14898-RA 87..455 16..388 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:40 Download gff for BS11935.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16481876..16482047 16..187 100 <- Plus
3R 16482104..16482213 188..297 100 <- Plus
3R 16482280..16482366 298..388 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:29:37 Download gff for BS11935.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12307598..12307769 16..187 100 <- Plus
arm_3R 12307826..12307935 188..297 100 <- Plus
arm_3R 12308002..12308088 298..388 95   Plus

BS11935.5prime Sequence

393 bp (393 high quality bases) assembled on 2006-06-16

> BS11935.5prime
GAAGTTATCAGTCGACATGTCCAGAATTTTGATGAGCCAACTGACCCACC
CTCAGAGGGTCCGACTGCTGTACAAAACGATCTTGCGACTGCACAGAGGA
CTTCCAGCGGAACTTCGTGCTCTGGGCGATAACTATGTGCGGGACGAGTT
CCGGCGACACCTCAAGTGCAATCCCATGGAGGCACAGCTCTTTATGACAG
AGTGGGCCCGATATGCGTCCACAATCACCCAACAACTAGGGATTCGGGGC
AAGCCCAAGGGAGAGCTGGGCGAAGAGATTGACCCCAAGACTGTAGAAAT
GTTGAAAGACGACCAAGTAGTCCAACTATACGAGCTGATGCTGGCGGCCA
AGGGAGTAGAAGATGCGCAAGGCAAATAAAAGCTTTCTAGACC

BS11935.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG14898-PA 363 CG14898-RA 1..363 17..379 1815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG14898-RA 470 CG14898-RA 92..455 17..380 1820 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16481876..16482047 380..209 860 100 Minus
3R 32079331 3R 16482104..16482215 208..97 560 100 Minus
3R 32079331 3R 16482279..16482361 99..17 415 100 Minus
Blast to na_te.dros performed on 2015-02-12 03:47:27 has no hits.

BS11935.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:13 Download gff for BS11935.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14898-PA 1..363 17..379 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:29:42 Download gff for BS11935.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14898-RA 87..455 8..380 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:00 Download gff for BS11935.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14898-RA 87..455 8..380 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:51:00 Download gff for BS11935.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16481876..16482047 209..380 100 <- Minus
3R 16482104..16482213 99..208 100 <- Minus
3R 16482280..16482366 8..98 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:29:42 Download gff for BS11935.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12307598..12307769 209..380 100 <- Minus
arm_3R 12307826..12307935 99..208 100 <- Minus
arm_3R 12308002..12308088 8..98 95   Minus

BS11935.complete Sequence

395 bp assembled on 2006-11-01

GenBank Submission: FJ637026

> BS11935.complete
GAAGTTATCAGTCGACATGTCCAGAATTTTGATGAGCCAACTGACCCACC
CTCAGAGGGTCCGACTGCTGTACAAAACGATCTTGCGACTGCACAGAGGA
CTTCCAGCGGAACTTCGTGCTCTGGGCGATAACTATGTGCGGGACGAGTT
CCGGCGACACCTCAAGTGCAATCCCATGGAGGCACAGCTCTTTATGACAG
AGTGGGCCCGATATGCGTCCACAATCACCCAACAACTAGGGATTCGGGGC
AAGCCCAAGGGAGAGCTGGGCGAAGAGATTGACCCCAAGACTGTAGAAAT
GTTGAAAGACGACCAAGTAGTCCAACTATACGAGCTGATGCTGGCGGCCA
AGGGAGTAGAAGATGCGCAAGGCAAATAAAAGCTTTCTAGACCAT

BS11935.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:08:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG14898-RA 363 CG14898-PA 1..363 17..379 1815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG14898-RA 470 CG14898-RA 92..455 17..380 1820 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16481876..16482047 380..209 860 100 Minus
3R 32079331 3R 16482104..16482215 208..97 560 100 Minus
3R 32079331 3R 16482279..16482361 99..17 415 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:08:09 has no hits.

BS11935.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:40 Download gff for BS11935.complete
Subject Subject Range Query Range Percent Splice Strand
CG14898-RA 1..363 17..379 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:35 Download gff for BS11935.complete
Subject Subject Range Query Range Percent Splice Strand
CG14898-RA 56..424 8..380 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:33 Download gff for BS11935.complete
Subject Subject Range Query Range Percent Splice Strand
CG14898-RA 92..452 17..377 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:40 Download gff for BS11935.complete
Subject Subject Range Query Range Percent Splice Strand
CG14898-RA 56..424 8..380 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:10 Download gff for BS11935.complete
Subject Subject Range Query Range Percent Splice Strand
CG14898-RA 92..452 17..377 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:10 Download gff for BS11935.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16481879..16482047 209..377 100 <- Minus
3R 16482104..16482213 99..208 100 <- Minus
3R 16482280..16482361 17..98 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:33 Download gff for BS11935.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12307601..12307769 209..377 100 <- Minus
arm_3R 12307826..12307935 99..208 100 <- Minus
arm_3R 12308002..12308083 17..98 100   Minus

BS11935.pep Sequence

Translation from 16 to 378

> BS11935.pep
MSRILMSQLTHPQRVRLLYKTILRLHRGLPAELRALGDNYVRDEFRRHLK
CNPMEAQLFMTEWARYASTITQQLGIRGKPKGELGEEIDPKTVEMLKDDQ
VVQLYELMLAAKGVEDAQGK*

BS11935.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:26:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG14898-PA 120 CG14898-PA 1..120 1..120 616 100 Plus