Clone Sequence Records
BS11935.3prime Sequence
393 bp (393 high quality bases) assembled on 2006-06-16
> BS11935.3prime
ATGGTCTAGAAAGCTTTTATTTGCCTTGCGCATCTTCTACTCCCTTGGCC
GCCAGCATCAGCTCGTATAGTTGGACTACTTGGTCGTCTTTCAACATTTC
TACAGTCTTGGGGTCAATCTCTTCGCCCAGCTCTCCCTTGGGCTTGCCCC
GAATCCCTAGTTGTTGGGTGATTGTGGACGCATATCGGGCCCACTCTGTC
ATAAAGAGCTGTGCCTCCATGGGATTGCACTTGAGGTGTCGCCGGAACTC
GTCCCGCACATAGTTATCGCCCAGAGCACGAAGTTCCGCTGGAAGTCCTC
TGTGCAGTCGCAAGATCGTTTTGTACAGCAGTCGGACCCTCTGAGGGTGG
GTCAGTTGGCTCATCAAAATTCTGGACATGTCGACTGATAACT
BS11935.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14898-PA | 363 | CG14898-RA | 1..363 | 379..17 | 1815 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:47:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14898-RA | 470 | CG14898-RA | 92..455 | 379..16 | 1820 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:47:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16481876..16482047 | 16..187 | 860 | 100 | Plus |
3R | 32079331 | 3R | 16482104..16482215 | 188..299 | 560 | 100 | Plus |
3R | 32079331 | 3R | 16482279..16482361 | 297..379 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:47:16 has no hits.
BS11935.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:13 Download gff for
BS11935.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14898-PA | 1..363 | 17..379 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:29:37 Download gff for
BS11935.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14898-RA | 87..455 | 16..388 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:40 Download gff for
BS11935.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14898-RA | 87..455 | 16..388 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:40 Download gff for
BS11935.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16481876..16482047 | 16..187 | 100 | <- | Plus |
3R | 16482104..16482213 | 188..297 | 100 | <- | Plus |
3R | 16482280..16482366 | 298..388 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:29:37 Download gff for
BS11935.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12307598..12307769 | 16..187 | 100 | <- | Plus |
arm_3R | 12307826..12307935 | 188..297 | 100 | <- | Plus |
arm_3R | 12308002..12308088 | 298..388 | 95 | | Plus |
BS11935.5prime Sequence
393 bp (393 high quality bases) assembled on 2006-06-16
> BS11935.5prime
GAAGTTATCAGTCGACATGTCCAGAATTTTGATGAGCCAACTGACCCACC
CTCAGAGGGTCCGACTGCTGTACAAAACGATCTTGCGACTGCACAGAGGA
CTTCCAGCGGAACTTCGTGCTCTGGGCGATAACTATGTGCGGGACGAGTT
CCGGCGACACCTCAAGTGCAATCCCATGGAGGCACAGCTCTTTATGACAG
AGTGGGCCCGATATGCGTCCACAATCACCCAACAACTAGGGATTCGGGGC
AAGCCCAAGGGAGAGCTGGGCGAAGAGATTGACCCCAAGACTGTAGAAAT
GTTGAAAGACGACCAAGTAGTCCAACTATACGAGCTGATGCTGGCGGCCA
AGGGAGTAGAAGATGCGCAAGGCAAATAAAAGCTTTCTAGACC
BS11935.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14898-PA | 363 | CG14898-RA | 1..363 | 17..379 | 1815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:47:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14898-RA | 470 | CG14898-RA | 92..455 | 17..380 | 1820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:47:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16481876..16482047 | 380..209 | 860 | 100 | Minus |
3R | 32079331 | 3R | 16482104..16482215 | 208..97 | 560 | 100 | Minus |
3R | 32079331 | 3R | 16482279..16482361 | 99..17 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:47:27 has no hits.
BS11935.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:13 Download gff for
BS11935.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14898-PA | 1..363 | 17..379 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:29:42 Download gff for
BS11935.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14898-RA | 87..455 | 8..380 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:00 Download gff for
BS11935.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14898-RA | 87..455 | 8..380 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:51:00 Download gff for
BS11935.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16481876..16482047 | 209..380 | 100 | <- | Minus |
3R | 16482104..16482213 | 99..208 | 100 | <- | Minus |
3R | 16482280..16482366 | 8..98 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:29:42 Download gff for
BS11935.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12307598..12307769 | 209..380 | 100 | <- | Minus |
arm_3R | 12307826..12307935 | 99..208 | 100 | <- | Minus |
arm_3R | 12308002..12308088 | 8..98 | 95 | | Minus |
BS11935.complete Sequence
395 bp assembled on 2006-11-01
GenBank Submission: FJ637026
> BS11935.complete
GAAGTTATCAGTCGACATGTCCAGAATTTTGATGAGCCAACTGACCCACC
CTCAGAGGGTCCGACTGCTGTACAAAACGATCTTGCGACTGCACAGAGGA
CTTCCAGCGGAACTTCGTGCTCTGGGCGATAACTATGTGCGGGACGAGTT
CCGGCGACACCTCAAGTGCAATCCCATGGAGGCACAGCTCTTTATGACAG
AGTGGGCCCGATATGCGTCCACAATCACCCAACAACTAGGGATTCGGGGC
AAGCCCAAGGGAGAGCTGGGCGAAGAGATTGACCCCAAGACTGTAGAAAT
GTTGAAAGACGACCAAGTAGTCCAACTATACGAGCTGATGCTGGCGGCCA
AGGGAGTAGAAGATGCGCAAGGCAAATAAAAGCTTTCTAGACCAT
BS11935.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:08:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14898-RA | 363 | CG14898-PA | 1..363 | 17..379 | 1815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14898-RA | 470 | CG14898-RA | 92..455 | 17..380 | 1820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16481876..16482047 | 380..209 | 860 | 100 | Minus |
3R | 32079331 | 3R | 16482104..16482215 | 208..97 | 560 | 100 | Minus |
3R | 32079331 | 3R | 16482279..16482361 | 99..17 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:08:09 has no hits.
BS11935.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:40 Download gff for
BS11935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14898-RA | 1..363 | 17..379 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:35 Download gff for
BS11935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14898-RA | 56..424 | 8..380 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:33 Download gff for
BS11935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14898-RA | 92..452 | 17..377 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:40 Download gff for
BS11935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14898-RA | 56..424 | 8..380 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:10 Download gff for
BS11935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14898-RA | 92..452 | 17..377 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:10 Download gff for
BS11935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16481879..16482047 | 209..377 | 100 | <- | Minus |
3R | 16482104..16482213 | 99..208 | 100 | <- | Minus |
3R | 16482280..16482361 | 17..98 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:33 Download gff for
BS11935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12307601..12307769 | 209..377 | 100 | <- | Minus |
arm_3R | 12307826..12307935 | 99..208 | 100 | <- | Minus |
arm_3R | 12308002..12308083 | 17..98 | 100 | | Minus |
BS11935.pep Sequence
Translation from 16 to 378
> BS11935.pep
MSRILMSQLTHPQRVRLLYKTILRLHRGLPAELRALGDNYVRDEFRRHLK
CNPMEAQLFMTEWARYASTITQQLGIRGKPKGELGEEIDPKTVEMLKDDQ
VVQLYELMLAAKGVEDAQGK*
BS11935.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:26:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14898-PA | 120 | CG14898-PA | 1..120 | 1..120 | 616 | 100 | Plus |