Clone BS11937 Report

Search the DGRC for BS11937

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:119
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptPH4alphaSG2-RB
Protein status:BS11937.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11937.3prime Sequence

804 bp (727 high quality bases) assembled on 2006-06-16

> BS11937.3prime
ATGGTCTAGAAAGCTTCTAATCTCGATAGGCTAGCGACTTGTAGCTATCT
GAGGTGAGGTTGCAGGGACGACGGAACTCCTGGTATCCCGAGTGCATCCA
GATGTTGCCAATCCGCTTGGAACCCACGATAACTGGACAGCCAGCATGCA
AAGTGCGAGCATCCACATGCAGGGATCGATGAAGATTGTGCCACATGACC
AGAGCTCCTTTGACAGGAGGCAGGAACACATTAAGCTTGGTGAAGACAGT
ATAACCTCCTTGTTCCACATCAGAAAGATAAAACATGCTGGTGGAGATGC
GATCTCCTTCGAAGTTCTTCGGCAGATTGACCTCAAAGTAATCCGGATGC
GGCTCGTACTGCCCTCCAACTCCGTAGTTGGCCACCTGCATATGCTCCGC
TCCGGCCATATCGAATCCAGATACAAACTGGATGATCCGACCTACGGAAT
TCATCACCGGGGACTTGTAGTCGAGCCAGGTTTGCTGACTGACCCGCAAG
TCCCTCACGGTGCCTTCTCCACCACTTCCGGCCACAGCGGACCTAACCAT
CTCCTCCTTGTCCGCTTCCTCGAAGATGGACAAAATCTGTTTGGAGCTCA
GCATTCCGTGATAAACATTTATATCCGGATCCAAGTGTACCGGTTCCACT
TGAAGTGGAGCCAAGGTGAAGTAAGCATGGCGTTTTCCATCCAGGTAGCA
TCTTAAGGGATCACCACTTCGCTCTTCGGGCAATCTTCTGCCCTGGCATA
ACCTAGTATAGTTGGAAAACCAAGAGGGTTTCGTCTCCTGGACATTCTTT
CCTG

BS11937.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG1546-PA 1584 PH4alphaSG2-RA 797..1584 804..17 3940 100 Minus
CG1546-PB 906 PH4alphaSG2-RB 119..906 804..17 3940 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:37:02
Subject Length Description Subject Range Query Range Score Percent Strand
PH4alphaSG2-RA 1683 CG1546-RA 863..1650 804..17 3940 100 Minus
PH4alphaMP-RA 1882 CG9726-RA 1741..1835 17..111 475 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30491043..30491569 804..278 2635 100 Minus
3R 32079331 3R 30491626..30491791 277..112 830 100 Minus
3R 32079331 3R 30491860..30491954 111..17 475 100 Minus
Blast to na_te.dros performed on 2015-02-08 11:36:59 has no hits.

BS11937.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:14 Download gff for BS11937.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1546-PB 119..906 17..804 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:35:27 Download gff for BS11937.3prime
Subject Subject Range Query Range Percent Splice Strand
PH4alphaSG2-RA 863..1650 17..804 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:40:59 Download gff for BS11937.3prime
Subject Subject Range Query Range Percent Splice Strand
PH4alphaSG2-RA 863..1650 17..804 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:40:59 Download gff for BS11937.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30491626..30491791 112..277 100 -> Minus
3R 30491860..30491954 17..111 100   Minus
3R 30491043..30491569 278..804 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:35:27 Download gff for BS11937.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26316765..26317291 278..804 100 -> Minus
arm_3R 26317348..26317513 112..277 100 -> Minus
arm_3R 26317582..26317676 17..111 100   Minus

BS11937.5prime Sequence

826 bp (712 high quality bases) assembled on 2006-06-16

> BS11937.5prime
GAAGTTATCAGTCGACATGGCTAATTTTGAGTTGGGCAATCCAAAGAAAG
CCGCAAGACTACTGAGTCAGATCCTTGAATCGCAACCAACACATTCCGCC
CAGCAAACTCAAAAGTATCTGGAGAGCAGGGTGCCAGGAAAGAATGTCCA
GGAGACGAAACCCTCTTGGTTTTCCAACTATACTAGGTTATGCCAGGGCA
GAAGATTGCCCGAAGAGCGAAGTGGTGATCCCTTAAGATGCTACCTGGAT
GGAAAACGCCATGCTTACTTCACCTTGGCTCCACTTCAAGTGGAACCGGT
ACACTTGGATCCGGATATAAATGTTTATCACGGAATGCTGAGCTCCAAAC
AGATTTTGTCCATCTTCGAGGAAGCGGACAAGGAGGAGATGGTTAGGTCC
GCTGTGGCCGGAAGTGGTGGAGAAGGCACCGTGAGGGACTTGCGGGTCAG
TCAGCAAACCTGGCTCGACTACAAGTCCCCGGTGATGAATTCCGTAGGTC
GGATCATCCAGTTTGTATCTGGATTCGATATGGCCGGAGCGGAGCATATG
CAGGTGGCCAACTACGGAGTTGGAGGGCAGTACGAGCCGCATCCGGATTA
CTTTGAGGTCAATCTGCCGAAGAACTTCGAAGGAGATCGCATCTCCACCA
GCATGTTTTATCTTTCTGATGTGGAACAAGGAGGTTATACTGTCTTCACC
AAGCTTAATGTGTTCCTGCCTCCTGTCAAAGGAGCTCTGGTCATGTGGCA
CAATCTTCATCGATCCCTGCATGTGGATGCTCGCACTTTGCATGCTGGCT
GTCCAGTTATCGGGGGTTCCAAGCGG

BS11937.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG1546-PA 1584 PH4alphaSG2-RA 678..1488 16..826 4030 99.8 Plus
CG1546-PB 906 PH4alphaSG2-RB 1..810 17..826 4025 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
PH4alphaSG2-RA 1683 CG1546-RA 744..1554 16..826 4040 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:38:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30490924..30491569 16..661 3230 100 Plus
3R 32079331 3R 30491626..30491790 662..826 810 99.4 Plus
Blast to na_te.dros performed on 2015-02-08 11:38:04 has no hits.

BS11937.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:14 Download gff for BS11937.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1546-PA 668..1488 3..826 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:35:40 Download gff for BS11937.5prime
Subject Subject Range Query Range Percent Splice Strand
PH4alphaSG2-RA 734..1554 3..826 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:06 Download gff for BS11937.5prime
Subject Subject Range Query Range Percent Splice Strand
PH4alphaSG2-RA 734..1554 3..826 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:06 Download gff for BS11937.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30490914..30491569 3..661 99 -> Plus
3R 30491626..30491790 662..826 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:35:40 Download gff for BS11937.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26316636..26317291 3..661 99 -> Plus
arm_3R 26317348..26317512 662..826 99   Plus

BS11937.complete Sequence

938 bp assembled on 2006-11-01

GenBank Submission: FJ638839

> BS11937.complete
GAAGTTATCAGTCGACATGGCTAATTTTGAGTTGGGCAATCCAAAGAAAG
CCGCAAGACTACTGAGTCAGATCCTTGAATCGCAACCAACACATTCCGCC
CAGCAAACTCAAAAGTATCTGGAGAGCAGGGTGCCAGGAAAGAATGTCCA
GGAGACGAAACCCTCTTGGTTTTCCAACTATACTAGGTTATGCCAGGGCA
GAAGATTGCCCGAAGAGCGAAGTGGTGATCCCTTAAGATGCTACCTGGAT
GGAAAACGCCATGCTTACTTCACCTTGGCTCCACTTCAAGTGGAACCGGT
ACACTTGGATCCGGATATAAATGTTTATCACGGAATGCTGAGCTCCAAAC
AGATTTTGTCCATCTTCGAGGAAGCGGACAAGGAGGAGATGGTTAGGTCC
GCTGTGGCCGGAAGTGGTGGAGAAGGCACCGTGAGGGACTTGCGGGTCAG
TCAGCAAACCTGGCTCGACTACAAGTCCCCGGTGATGAATTCCGTAGGTC
GGATCATCCAGTTTGTATCTGGATTCGATATGGCCGGAGCGGAGCATATG
CAGGTGGCCAACTACGGAGTTGGAGGGCAGTACGAGCCGCATCCGGATTA
CTTTGAGGTCAATCTGCCGAAGAACTTCGAAGGAGATCGCATCTCCACCA
GCATGTTTTATCTTTCTGATGTGGAACAAGGAGGTTATACTGTCTTCACC
AAGCTTAATGTGTTCCTGCCTCCTGTCAAAGGAGCTCTGGTCATGTGGCA
CAATCTTCATCGATCCCTGCATGTGGATGCTCGCACTTTGCATGCTGGCT
GTCCAGTTATCGTGGGTTCCAAGCGGATTGGCAACATCTGGATGCACTCG
GGATACCAGGAGTTCCGTCGTCCCTGCAACCTCACCTCAGATAGCTACAA
GTCGCTAGCCTATCGAGATTAGAAGCTTTCTAGACCAT

BS11937.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:40:42
Subject Length Description Subject Range Query Range Score Percent Strand
PH4alphaSG2-RA 1584 CG1546-PA 678..1584 16..922 4535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:40:43
Subject Length Description Subject Range Query Range Score Percent Strand
PH4alphaSG2-RA 1683 CG1546-RA 744..1650 16..922 4535 100 Plus
PH4alphaMP-RA 1882 CG9726-RA 1741..1835 922..828 475 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30490924..30491569 16..661 3230 100 Plus
3R 32079331 3R 30491626..30491791 662..827 830 100 Plus
3R 32079331 3R 30491860..30491954 828..922 475 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:40:41 has no hits.

BS11937.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:25 Download gff for BS11937.complete
Subject Subject Range Query Range Percent Splice Strand
PH4alphaSG2-RA 668..1584 3..922 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:40 Download gff for BS11937.complete
Subject Subject Range Query Range Percent Splice Strand
PH4alphaSG2-RB 784..1700 3..922 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:48 Download gff for BS11937.complete
Subject Subject Range Query Range Percent Splice Strand
PH4alphaSG2-RA 745..1650 17..922 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:25 Download gff for BS11937.complete
Subject Subject Range Query Range Percent Splice Strand
PH4alphaSG2-RB 784..1700 3..922 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:03 Download gff for BS11937.complete
Subject Subject Range Query Range Percent Splice Strand
PH4alphaSG2-RA 745..1650 17..922 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:03 Download gff for BS11937.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30490925..30491569 17..661 100 -> Plus
3R 30491626..30491791 662..827 100 -> Plus
3R 30491860..30491954 828..922 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:48 Download gff for BS11937.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26316647..26317291 17..661 100 -> Plus
arm_3R 26317348..26317513 662..827 100 -> Plus
arm_3R 26317582..26317676 828..922 100   Plus

BS11937.pep Sequence

Translation from 16 to 921

> BS11937.pep
MANFELGNPKKAARLLSQILESQPTHSAQQTQKYLESRVPGKNVQETKPS
WFSNYTRLCQGRRLPEERSGDPLRCYLDGKRHAYFTLAPLQVEPVHLDPD
INVYHGMLSSKQILSIFEEADKEEMVRSAVAGSGGEGTVRDLRVSQQTWL
DYKSPVMNSVGRIIQFVSGFDMAGAEHMQVANYGVGGQYEPHPDYFEVNL
PKNFEGDRISTSMFYLSDVEQGGYTVFTKLNVFLPPVKGALVMWHNLHRS
LHVDARTLHAGCPVIVGSKRIGNIWMHSGYQEFRRPCNLTSDSYKSLAYR
D*

BS11937.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
PH4alphaSG2-PA 527 CG1546-PA 227..527 1..301 1603 100 Plus
PH4alphaSG1-PA 540 CG31014-PA 229..539 6..301 542 40.1 Plus
PH4alphaNE1-PA 537 CG9728-PA 286..533 52..299 485 44.6 Plus
PH4alphaEFB-PA 550 CG31022-PA 252..544 7..292 454 36.7 Plus
PH4alphaMP-PA 535 CG9726-PA 240..533 9..301 421 36.9 Plus