Clone Sequence Records
BS11937.3prime Sequence
804 bp (727 high quality bases) assembled on 2006-06-16
> BS11937.3prime
ATGGTCTAGAAAGCTTCTAATCTCGATAGGCTAGCGACTTGTAGCTATCT
GAGGTGAGGTTGCAGGGACGACGGAACTCCTGGTATCCCGAGTGCATCCA
GATGTTGCCAATCCGCTTGGAACCCACGATAACTGGACAGCCAGCATGCA
AAGTGCGAGCATCCACATGCAGGGATCGATGAAGATTGTGCCACATGACC
AGAGCTCCTTTGACAGGAGGCAGGAACACATTAAGCTTGGTGAAGACAGT
ATAACCTCCTTGTTCCACATCAGAAAGATAAAACATGCTGGTGGAGATGC
GATCTCCTTCGAAGTTCTTCGGCAGATTGACCTCAAAGTAATCCGGATGC
GGCTCGTACTGCCCTCCAACTCCGTAGTTGGCCACCTGCATATGCTCCGC
TCCGGCCATATCGAATCCAGATACAAACTGGATGATCCGACCTACGGAAT
TCATCACCGGGGACTTGTAGTCGAGCCAGGTTTGCTGACTGACCCGCAAG
TCCCTCACGGTGCCTTCTCCACCACTTCCGGCCACAGCGGACCTAACCAT
CTCCTCCTTGTCCGCTTCCTCGAAGATGGACAAAATCTGTTTGGAGCTCA
GCATTCCGTGATAAACATTTATATCCGGATCCAAGTGTACCGGTTCCACT
TGAAGTGGAGCCAAGGTGAAGTAAGCATGGCGTTTTCCATCCAGGTAGCA
TCTTAAGGGATCACCACTTCGCTCTTCGGGCAATCTTCTGCCCTGGCATA
ACCTAGTATAGTTGGAAAACCAAGAGGGTTTCGTCTCCTGGACATTCTTT
CCTG
BS11937.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1546-PA | 1584 | PH4alphaSG2-RA | 797..1584 | 804..17 | 3940 | 100 | Minus |
CG1546-PB | 906 | PH4alphaSG2-RB | 119..906 | 804..17 | 3940 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:37:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PH4alphaSG2-RA | 1683 | CG1546-RA | 863..1650 | 804..17 | 3940 | 100 | Minus |
PH4alphaMP-RA | 1882 | CG9726-RA | 1741..1835 | 17..111 | 475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:36:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30491043..30491569 | 804..278 | 2635 | 100 | Minus |
3R | 32079331 | 3R | 30491626..30491791 | 277..112 | 830 | 100 | Minus |
3R | 32079331 | 3R | 30491860..30491954 | 111..17 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:36:59 has no hits.
BS11937.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:14 Download gff for
BS11937.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1546-PB | 119..906 | 17..804 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:35:27 Download gff for
BS11937.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaSG2-RA | 863..1650 | 17..804 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:40:59 Download gff for
BS11937.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaSG2-RA | 863..1650 | 17..804 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:40:59 Download gff for
BS11937.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30491626..30491791 | 112..277 | 100 | -> | Minus |
3R | 30491860..30491954 | 17..111 | 100 | | Minus |
3R | 30491043..30491569 | 278..804 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:35:27 Download gff for
BS11937.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26316765..26317291 | 278..804 | 100 | -> | Minus |
arm_3R | 26317348..26317513 | 112..277 | 100 | -> | Minus |
arm_3R | 26317582..26317676 | 17..111 | 100 | | Minus |
BS11937.5prime Sequence
826 bp (712 high quality bases) assembled on 2006-06-16
> BS11937.5prime
GAAGTTATCAGTCGACATGGCTAATTTTGAGTTGGGCAATCCAAAGAAAG
CCGCAAGACTACTGAGTCAGATCCTTGAATCGCAACCAACACATTCCGCC
CAGCAAACTCAAAAGTATCTGGAGAGCAGGGTGCCAGGAAAGAATGTCCA
GGAGACGAAACCCTCTTGGTTTTCCAACTATACTAGGTTATGCCAGGGCA
GAAGATTGCCCGAAGAGCGAAGTGGTGATCCCTTAAGATGCTACCTGGAT
GGAAAACGCCATGCTTACTTCACCTTGGCTCCACTTCAAGTGGAACCGGT
ACACTTGGATCCGGATATAAATGTTTATCACGGAATGCTGAGCTCCAAAC
AGATTTTGTCCATCTTCGAGGAAGCGGACAAGGAGGAGATGGTTAGGTCC
GCTGTGGCCGGAAGTGGTGGAGAAGGCACCGTGAGGGACTTGCGGGTCAG
TCAGCAAACCTGGCTCGACTACAAGTCCCCGGTGATGAATTCCGTAGGTC
GGATCATCCAGTTTGTATCTGGATTCGATATGGCCGGAGCGGAGCATATG
CAGGTGGCCAACTACGGAGTTGGAGGGCAGTACGAGCCGCATCCGGATTA
CTTTGAGGTCAATCTGCCGAAGAACTTCGAAGGAGATCGCATCTCCACCA
GCATGTTTTATCTTTCTGATGTGGAACAAGGAGGTTATACTGTCTTCACC
AAGCTTAATGTGTTCCTGCCTCCTGTCAAAGGAGCTCTGGTCATGTGGCA
CAATCTTCATCGATCCCTGCATGTGGATGCTCGCACTTTGCATGCTGGCT
GTCCAGTTATCGGGGGTTCCAAGCGG
BS11937.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1546-PA | 1584 | PH4alphaSG2-RA | 678..1488 | 16..826 | 4030 | 99.8 | Plus |
CG1546-PB | 906 | PH4alphaSG2-RB | 1..810 | 17..826 | 4025 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:38:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PH4alphaSG2-RA | 1683 | CG1546-RA | 744..1554 | 16..826 | 4040 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:38:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30490924..30491569 | 16..661 | 3230 | 100 | Plus |
3R | 32079331 | 3R | 30491626..30491790 | 662..826 | 810 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:38:04 has no hits.
BS11937.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:14 Download gff for
BS11937.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1546-PA | 668..1488 | 3..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:35:40 Download gff for
BS11937.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaSG2-RA | 734..1554 | 3..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:06 Download gff for
BS11937.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaSG2-RA | 734..1554 | 3..826 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:06 Download gff for
BS11937.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30490914..30491569 | 3..661 | 99 | -> | Plus |
3R | 30491626..30491790 | 662..826 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:35:40 Download gff for
BS11937.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26316636..26317291 | 3..661 | 99 | -> | Plus |
arm_3R | 26317348..26317512 | 662..826 | 99 | | Plus |
BS11937.complete Sequence
938 bp assembled on 2006-11-01
GenBank Submission: FJ638839
> BS11937.complete
GAAGTTATCAGTCGACATGGCTAATTTTGAGTTGGGCAATCCAAAGAAAG
CCGCAAGACTACTGAGTCAGATCCTTGAATCGCAACCAACACATTCCGCC
CAGCAAACTCAAAAGTATCTGGAGAGCAGGGTGCCAGGAAAGAATGTCCA
GGAGACGAAACCCTCTTGGTTTTCCAACTATACTAGGTTATGCCAGGGCA
GAAGATTGCCCGAAGAGCGAAGTGGTGATCCCTTAAGATGCTACCTGGAT
GGAAAACGCCATGCTTACTTCACCTTGGCTCCACTTCAAGTGGAACCGGT
ACACTTGGATCCGGATATAAATGTTTATCACGGAATGCTGAGCTCCAAAC
AGATTTTGTCCATCTTCGAGGAAGCGGACAAGGAGGAGATGGTTAGGTCC
GCTGTGGCCGGAAGTGGTGGAGAAGGCACCGTGAGGGACTTGCGGGTCAG
TCAGCAAACCTGGCTCGACTACAAGTCCCCGGTGATGAATTCCGTAGGTC
GGATCATCCAGTTTGTATCTGGATTCGATATGGCCGGAGCGGAGCATATG
CAGGTGGCCAACTACGGAGTTGGAGGGCAGTACGAGCCGCATCCGGATTA
CTTTGAGGTCAATCTGCCGAAGAACTTCGAAGGAGATCGCATCTCCACCA
GCATGTTTTATCTTTCTGATGTGGAACAAGGAGGTTATACTGTCTTCACC
AAGCTTAATGTGTTCCTGCCTCCTGTCAAAGGAGCTCTGGTCATGTGGCA
CAATCTTCATCGATCCCTGCATGTGGATGCTCGCACTTTGCATGCTGGCT
GTCCAGTTATCGTGGGTTCCAAGCGGATTGGCAACATCTGGATGCACTCG
GGATACCAGGAGTTCCGTCGTCCCTGCAACCTCACCTCAGATAGCTACAA
GTCGCTAGCCTATCGAGATTAGAAGCTTTCTAGACCAT
BS11937.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:40:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PH4alphaSG2-RA | 1584 | CG1546-PA | 678..1584 | 16..922 | 4535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:40:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PH4alphaSG2-RA | 1683 | CG1546-RA | 744..1650 | 16..922 | 4535 | 100 | Plus |
PH4alphaMP-RA | 1882 | CG9726-RA | 1741..1835 | 922..828 | 475 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:40:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30490924..30491569 | 16..661 | 3230 | 100 | Plus |
3R | 32079331 | 3R | 30491626..30491791 | 662..827 | 830 | 100 | Plus |
3R | 32079331 | 3R | 30491860..30491954 | 828..922 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:40:41 has no hits.
BS11937.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:25 Download gff for
BS11937.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaSG2-RA | 668..1584 | 3..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:40 Download gff for
BS11937.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaSG2-RB | 784..1700 | 3..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:48 Download gff for
BS11937.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaSG2-RA | 745..1650 | 17..922 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:25 Download gff for
BS11937.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaSG2-RB | 784..1700 | 3..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:03 Download gff for
BS11937.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaSG2-RA | 745..1650 | 17..922 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:03 Download gff for
BS11937.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30490925..30491569 | 17..661 | 100 | -> | Plus |
3R | 30491626..30491791 | 662..827 | 100 | -> | Plus |
3R | 30491860..30491954 | 828..922 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:48 Download gff for
BS11937.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26316647..26317291 | 17..661 | 100 | -> | Plus |
arm_3R | 26317348..26317513 | 662..827 | 100 | -> | Plus |
arm_3R | 26317582..26317676 | 828..922 | 100 | | Plus |
BS11937.pep Sequence
Translation from 16 to 921
> BS11937.pep
MANFELGNPKKAARLLSQILESQPTHSAQQTQKYLESRVPGKNVQETKPS
WFSNYTRLCQGRRLPEERSGDPLRCYLDGKRHAYFTLAPLQVEPVHLDPD
INVYHGMLSSKQILSIFEEADKEEMVRSAVAGSGGEGTVRDLRVSQQTWL
DYKSPVMNSVGRIIQFVSGFDMAGAEHMQVANYGVGGQYEPHPDYFEVNL
PKNFEGDRISTSMFYLSDVEQGGYTVFTKLNVFLPPVKGALVMWHNLHRS
LHVDARTLHAGCPVIVGSKRIGNIWMHSGYQEFRRPCNLTSDSYKSLAYR
D*
BS11937.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PH4alphaSG2-PA | 527 | CG1546-PA | 227..527 | 1..301 | 1603 | 100 | Plus |
PH4alphaSG1-PA | 540 | CG31014-PA | 229..539 | 6..301 | 542 | 40.1 | Plus |
PH4alphaNE1-PA | 537 | CG9728-PA | 286..533 | 52..299 | 485 | 44.6 | Plus |
PH4alphaEFB-PA | 550 | CG31022-PA | 252..544 | 7..292 | 454 | 36.7 | Plus |
PH4alphaMP-PA | 535 | CG9726-PA | 240..533 | 9..301 | 421 | 36.9 | Plus |