BS11940.complete Sequence
1049 bp assembled on 2006-11-01
GenBank Submission: FJ637027
> BS11940.complete
GAAGTTATCAGTCGACATGATGAAACTGTTCCTGGCCTTGGCCTTTTGTG
TCCTGGCGGCTAATGCCGTGGAGGTTCGTGTGAATGGTGAGAACGGATGG
TATGTGCCCCAGGCCGATGGTACCATGGAGTGGATGGACCGCGAGTTCGC
CGAGGCCTATTTGGAGACCAAGAACCGCATGGAAGGACGCAACGTCCTGA
ACCCCGTCACCTTCTACCTGTACACCAACTCGAACCGCAACTCTCCCCAG
GAGATCAAGGCTACGTCAGCATCGATCTCTGGCTCGCACTTCAACCCCAA
CCACCCCACCCGCTTCACTATCCACGGCTGGTCCTCCAGCAAGGATGAGT
TCATCAACTACGGTGTCCGCGATGCCTGGTTCACCCACGGCGACATGAAC
ATGATTGCCGTCGACTGGGGACGTGCTCGTTCCGTGGACTACGCCTCCTC
CGTTCTGGCTGTTCCCGGAGTCGGCGAGCAGGTGGCTACCCTGATCAACT
TTATGCGCAGCAATCACGGCCTGAACCTGGACAACACCATGGTGATTGGT
CACAGCCTGGGCGCCCATGTCTCGGGCTATGCTGGCAAGAATGTGAAGAA
CGGCCAGCTGCACACCATCATTGGTCTGGACCCCGCCCTGCCCCTTTTCA
GCTACGATTCCCCCAACAAGCGCCTGAGCTCCACCGATGCTTACTACGTG
GAGTCCATCCAGACCAACGGAGGAACCCTGGGATTCCTGAAGCCCATCGG
CAAGGGAGCCTTCTACCCCAACGGAGGAAAGAGCCAGCCCGGATGTGGTG
TTGATCTCACCGGATCCTGCGCCCACAGCCGCTCAGTGATCTACTACGCC
GAGTCCGTGACCGAGAACAACTTCCCCACCATGCGCTGCGGCGACTACGA
GGAGGCTGTGGCCAAGGAGTGCGGTAGCTCCTACAGCTCCGTCCGCATGG
GAGCCACCACCAATGCCTACATGGTCGCTGGAGATTACTATGTACCCGTC
CGTAGCGATGCTCCCTACGGAATGGGCAACTAAAAGCTTTCTAGACCAT
BS11940.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:47:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6295-RA | 1017 | CG6295-PA | 1..1017 | 17..1033 | 5085 | 100 | Plus |
| CG6277-RA | 1026 | CG6277-PA | 394..1017 | 398..1024 | 1045 | 78.1 | Plus |
| CG6271-RA | 1026 | CG6271-PA | 538..1017 | 542..1024 | 985 | 80.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:47:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6295-RA | 1091 | CG6295-RA | 26..1042 | 17..1033 | 5085 | 100 | Plus |
| CG6277-RA | 1085 | CG6277-RA | 424..1047 | 398..1024 | 1045 | 78.1 | Plus |
| CG6271-RA | 1072 | CG6271-RA | 559..1038 | 542..1024 | 985 | 80.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:47:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27005948..27006922 | 1033..59 | 4875 | 100 | Minus |
| 3R | 32079331 | 3R | 27022109..27022732 | 1024..398 | 1045 | 78.1 | Minus |
| 3R | 32079331 | 3R | 27025002..27025481 | 1024..542 | 985 | 80.7 | Minus |
| 3R | 32079331 | 3R | 27020310..27020935 | 999..374 | 805 | 75.2 | Minus |
| 3R | 32079331 | 3R | 27006984..27007030 | 63..17 | 220 | 97.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:47:27 has no hits.
BS11940.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:26 Download gff for
BS11940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6295-RA | 1..1017 | 17..1033 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:42 Download gff for
BS11940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6295-RA | 26..1042 | 17..1033 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:32 Download gff for
BS11940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6295-RA | 26..1040 | 17..1031 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:26 Download gff for
BS11940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6295-RA | 26..1042 | 17..1033 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:27:01 Download gff for
BS11940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6295-RA | 26..1040 | 17..1031 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:27:01 Download gff for
BS11940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27005950..27006921 | 60..1031 | 100 | <- | Minus |
| 3R | 27006988..27007030 | 17..59 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:32 Download gff for
BS11940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22831672..22832643 | 60..1031 | 100 | <- | Minus |
| arm_3R | 22832710..22832752 | 17..59 | 100 | | Minus |
BS11940.pep Sequence
Translation from 16 to 1032
> BS11940.pep
MMKLFLALAFCVLAANAVEVRVNGENGWYVPQADGTMEWMDREFAEAYLE
TKNRMEGRNVLNPVTFYLYTNSNRNSPQEIKATSASISGSHFNPNHPTRF
TIHGWSSSKDEFINYGVRDAWFTHGDMNMIAVDWGRARSVDYASSVLAVP
GVGEQVATLINFMRSNHGLNLDNTMVIGHSLGAHVSGYAGKNVKNGQLHT
IIGLDPALPLFSYDSPNKRLSSTDAYYVESIQTNGGTLGFLKPIGKGAFY
PNGGKSQPGCGVDLTGSCAHSRSVIYYAESVTENNFPTMRCGDYEEAVAK
ECGSSYSSVRMGATTNAYMVAGDYYVPVRSDAPYGMGN*
BS11940.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6295-PA | 338 | CG6295-PA | 1..338 | 1..338 | 1806 | 100 | Plus |
| CG6277-PA | 341 | CG6277-PA | 1..341 | 2..338 | 1219 | 66.7 | Plus |
| CG6271-PA | 341 | CG6271-PA | 1..341 | 2..338 | 1202 | 66.1 | Plus |
| CG6283-PA | 339 | CG6283-PA | 1..336 | 2..335 | 1161 | 63.7 | Plus |
| CG17191-PA | 337 | CG17191-PA | 1..334 | 2..335 | 1064 | 58 | Plus |
