Clone Sequence Records
BS11945.3prime Sequence
564 bp (564 high quality bases) assembled on 2006-06-16
> BS11945.3prime
ATGGTCTAGAAAGCTTCTATTTCCCTACTGCATTTCCCGTTTTGTGACCG
TTTGAATTAAATTTTTTCTTGCGCATTTTGGCAGGACCAACTTCCTCTGC
TGGGTTCATTATATTTTTCTCGATGTCCTCTTCGTCTAAGAGATCTTTAT
ATAGATCCGGGATTATTGTTTCCTTCATGAACTGCGGCGTACGACCGGTA
AGCACCGACTGTCGCACATCGTCCTCTTTTTGTTCTAGCGTCTGTGTGGT
GGTGTGCAGCTTGCTCCGGATCTTGTAGTAGTTAGCAGTGCTGCGAAGCT
TGGCAGTAGCTTCCAAGAATTTCTCGTCTGCTTGACTAAGAGATGTGGAA
ATCATCTTCGGTAATTGGATGCGTTGCTTGTAGCTGCGCCCGAACAACGG
ATGTCGTTCTCGTAATAGGTACTTGGGTAGCGTTAGATCAGCTTGAATTG
TATGTTCCTTCTGACCTGGTAGCGGTTGTTTATCATATAGACGCTTGCTG
ATTACCACATAGCCGACAAAGGGAATTTTCCGGAGGGCATAGGGACCCAT
GTCGACTGATAACT
BS11945.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11076-PB | 534 | CG11076-RB | 1..534 | 550..17 | 2670 | 100 | Minus |
CG11076-PA | 840 | CG11076-RA | 307..840 | 550..17 | 2670 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:30:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11076-RE | 1230 | CG11076-RE | 437..971 | 550..16 | 2675 | 100 | Minus |
CG11076-RD | 1192 | CG11076-RD | 399..933 | 550..16 | 2675 | 100 | Minus |
CG11076-RA | 1265 | CG11076-RA | 472..1006 | 550..16 | 2675 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:30:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 1029970..1030504 | 16..550 | 2675 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:30:38 has no hits.
BS11945.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:16 Download gff for
BS11945.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11076-PA | 307..840 | 17..550 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:17 Download gff for
BS11945.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11076-RB | 399..933 | 16..550 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:03 Download gff for
BS11945.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11076-RA | 472..1006 | 16..550 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:03 Download gff for
BS11945.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 1029970..1030504 | 16..550 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:17 Download gff for
BS11945.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 1050596..1051130 | 16..550 | 100 | | Plus |
BS11945.5prime Sequence
564 bp (564 high quality bases) assembled on 2006-06-16
> BS11945.5prime
GAAGTTATCAGTCGACATGGGTCCCTATGCCCTCCGGAAAATTCCCTTTG
TCGGCTATGTGGTAATCAGCAAGCGTCTATATGATAAACAACCGCTACCA
GGTCAGAAGGAACATACAATTCAAGCTGATCTAACGCTACCCAAGTACCT
ATTACGAGAACGACATCCGTTGTTCGGGCGCAGCTACAAGCAACGCATCC
AATTACCGAAGATGATTTCCACATCTCTTAGTCAAGCAGACGAGAAATTC
TTGGAAGCTACTGCCAAGCTTCGCAGCACTGCTAACTACTACAAGATCCG
GAGCAAGCTGCACACCACCACACAGACGCTAGAACAAAAAGAGGACGATG
TGCGACAGTCGGTGCTTACCGGTCGTACGCCGCAGTTCATGAAGGAAACA
ATAATCCCGGATCTATATAAAGATCTCTTAGACGAAGAGGACATCGAGAA
AAATATAATGAACCCAGCAGAGGAAGTTGGTCCTGCCAAAATGCGCAAGA
AAAAATTTAATTCAAACGGTCACAAAACGGGAAATGCAGTAGGGAAATAG
AAGCTTTCTAGACC
BS11945.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11076-PB | 534 | CG11076-RB | 1..534 | 17..550 | 2670 | 100 | Plus |
CG11076-PA | 840 | CG11076-RA | 307..840 | 17..550 | 2670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:56:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11076-RE | 1230 | CG11076-RE | 437..971 | 17..551 | 2675 | 100 | Plus |
CG11076-RD | 1192 | CG11076-RD | 399..933 | 17..551 | 2675 | 100 | Plus |
CG11076-RA | 1265 | CG11076-RA | 472..1006 | 17..551 | 2675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:56:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 1029970..1030504 | 551..17 | 2675 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:56:37 has no hits.
BS11945.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:17 Download gff for
BS11945.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11076-PA | 307..840 | 17..550 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:08:27 Download gff for
BS11945.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11076-RB | 399..933 | 17..551 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:23 Download gff for
BS11945.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11076-RA | 472..1006 | 17..551 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:23 Download gff for
BS11945.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 1029970..1030504 | 17..551 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:08:27 Download gff for
BS11945.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 1050596..1051130 | 17..551 | 100 | | Minus |
BS11945.complete Sequence
566 bp assembled on 2006-11-01
GenBank Submission: FJ637028
> BS11945.complete
GAAGTTATCAGTCGACATGGGTCCCTATGCCCTCCGGAAAATTCCCTTTG
TCGGCTATGTGGTAATCAGCAAGCGTCTATATGATAAACAACCGCTACCA
GGTCAGAAGGAACATACAATTCAAGCTGATCTAACGCTACCCAAGTACCT
ATTACGAGAACGACATCCGTTGTTCGGGCGCAGCTACAAGCAACGCATCC
AATTACCGAAGATGATTTCCACATCTCTTAGTCAAGCAGACGAGAAATTC
TTGGAAGCTACTGCCAAGCTTCGCAGCACTGCTAACTACTACAAGATCCG
GAGCAAGCTGCACACCACCACACAGACGCTAGAACAAAAAGAGGACGATG
TGCGACAGTCGGTGCTTACCGGTCGTACGCCGCAGTTCATGAAGGAAACA
ATAATCCCGGATCTATATAAAGATCTCTTAGACGAAGAGGACATCGAGAA
AAATATAATGAACCCAGCAGAGGAAGTTGGTCCTGCCAAAATGCGCAAGA
AAAAATTTAATTCAAACGGTCACAAAACGGGAAATGCAGTAGGGAAATAG
AAGCTTTCTAGACCAT
BS11945.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:28:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11076-RE | 783 | CG11076-PE | 250..783 | 17..550 | 2670 | 100 | Plus |
CG11076-RD | 783 | CG11076-PD | 250..783 | 17..550 | 2670 | 100 | Plus |
CG11076-RA | 840 | CG11076-PA | 307..840 | 17..550 | 2670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:28:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11076-RE | 1230 | CG11076-RE | 437..971 | 17..551 | 2675 | 100 | Plus |
CG11076-RD | 1192 | CG11076-RD | 399..933 | 17..551 | 2675 | 100 | Plus |
CG11076-RA | 1265 | CG11076-RA | 472..1006 | 17..551 | 2675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:28:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 1029970..1030504 | 551..17 | 2675 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:28:26 has no hits.
BS11945.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:27 Download gff for
BS11945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11076-RA | 307..840 | 17..550 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:44 Download gff for
BS11945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11076-RA | 468..1002 | 17..551 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:15:58 Download gff for
BS11945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11076-RB | 399..926 | 17..544 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:27 Download gff for
BS11945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11076-RA | 468..1002 | 17..551 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:11:23 Download gff for
BS11945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11076-RA | 472..999 | 17..544 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:11:23 Download gff for
BS11945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 1029977..1030504 | 17..544 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:15:58 Download gff for
BS11945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 1050603..1051130 | 17..544 | 100 | | Minus |
BS11945.pep Sequence
Translation from 16 to 549
> BS11945.pep
MGPYALRKIPFVGYVVISKRLYDKQPLPGQKEHTIQADLTLPKYLLRERH
PLFGRSYKQRIQLPKMISTSLSQADEKFLEATAKLRSTANYYKIRSKLHT
TTQTLEQKEDDVRQSVLTGRTPQFMKETIIPDLYKDLLDEEDIEKNIMNP
AEEVGPAKMRKKKFNSNGHKTGNAVGK*
BS11945.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11076-PE | 260 | CG11076-PE | 84..260 | 1..177 | 911 | 100 | Plus |
CG11076-PD | 260 | CG11076-PD | 84..260 | 1..177 | 911 | 100 | Plus |
CG11076-PA | 279 | CG11076-PA | 103..279 | 1..177 | 911 | 100 | Plus |