Clone BS11945 Report

Search the DGRC for BS11945

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:119
Well:45
Vector:pDNR-Dual
Associated Gene/TranscriptCG11076-RB
Protein status:BS11945.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11945.3prime Sequence

564 bp (564 high quality bases) assembled on 2006-06-16

> BS11945.3prime
ATGGTCTAGAAAGCTTCTATTTCCCTACTGCATTTCCCGTTTTGTGACCG
TTTGAATTAAATTTTTTCTTGCGCATTTTGGCAGGACCAACTTCCTCTGC
TGGGTTCATTATATTTTTCTCGATGTCCTCTTCGTCTAAGAGATCTTTAT
ATAGATCCGGGATTATTGTTTCCTTCATGAACTGCGGCGTACGACCGGTA
AGCACCGACTGTCGCACATCGTCCTCTTTTTGTTCTAGCGTCTGTGTGGT
GGTGTGCAGCTTGCTCCGGATCTTGTAGTAGTTAGCAGTGCTGCGAAGCT
TGGCAGTAGCTTCCAAGAATTTCTCGTCTGCTTGACTAAGAGATGTGGAA
ATCATCTTCGGTAATTGGATGCGTTGCTTGTAGCTGCGCCCGAACAACGG
ATGTCGTTCTCGTAATAGGTACTTGGGTAGCGTTAGATCAGCTTGAATTG
TATGTTCCTTCTGACCTGGTAGCGGTTGTTTATCATATAGACGCTTGCTG
ATTACCACATAGCCGACAAAGGGAATTTTCCGGAGGGCATAGGGACCCAT
GTCGACTGATAACT

BS11945.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG11076-PB 534 CG11076-RB 1..534 550..17 2670 100 Minus
CG11076-PA 840 CG11076-RA 307..840 550..17 2670 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:30:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG11076-RE 1230 CG11076-RE 437..971 550..16 2675 100 Minus
CG11076-RD 1192 CG11076-RD 399..933 550..16 2675 100 Minus
CG11076-RA 1265 CG11076-RA 472..1006 550..16 2675 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 1029970..1030504 16..550 2675 100 Plus
Blast to na_te.dros performed on 2015-02-03 06:30:38 has no hits.

BS11945.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:16 Download gff for BS11945.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11076-PA 307..840 17..550 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:17 Download gff for BS11945.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11076-RB 399..933 16..550 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:03 Download gff for BS11945.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11076-RA 472..1006 16..550 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:03 Download gff for BS11945.3prime
Subject Subject Range Query Range Percent Splice Strand
4 1029970..1030504 16..550 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:17 Download gff for BS11945.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 1050596..1051130 16..550 100   Plus

BS11945.5prime Sequence

564 bp (564 high quality bases) assembled on 2006-06-16

> BS11945.5prime
GAAGTTATCAGTCGACATGGGTCCCTATGCCCTCCGGAAAATTCCCTTTG
TCGGCTATGTGGTAATCAGCAAGCGTCTATATGATAAACAACCGCTACCA
GGTCAGAAGGAACATACAATTCAAGCTGATCTAACGCTACCCAAGTACCT
ATTACGAGAACGACATCCGTTGTTCGGGCGCAGCTACAAGCAACGCATCC
AATTACCGAAGATGATTTCCACATCTCTTAGTCAAGCAGACGAGAAATTC
TTGGAAGCTACTGCCAAGCTTCGCAGCACTGCTAACTACTACAAGATCCG
GAGCAAGCTGCACACCACCACACAGACGCTAGAACAAAAAGAGGACGATG
TGCGACAGTCGGTGCTTACCGGTCGTACGCCGCAGTTCATGAAGGAAACA
ATAATCCCGGATCTATATAAAGATCTCTTAGACGAAGAGGACATCGAGAA
AAATATAATGAACCCAGCAGAGGAAGTTGGTCCTGCCAAAATGCGCAAGA
AAAAATTTAATTCAAACGGTCACAAAACGGGAAATGCAGTAGGGAAATAG
AAGCTTTCTAGACC

BS11945.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG11076-PB 534 CG11076-RB 1..534 17..550 2670 100 Plus
CG11076-PA 840 CG11076-RA 307..840 17..550 2670 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11076-RE 1230 CG11076-RE 437..971 17..551 2675 100 Plus
CG11076-RD 1192 CG11076-RD 399..933 17..551 2675 100 Plus
CG11076-RA 1265 CG11076-RA 472..1006 17..551 2675 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:56:35
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 1029970..1030504 551..17 2675 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:56:37 has no hits.

BS11945.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:17 Download gff for BS11945.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11076-PA 307..840 17..550 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:08:27 Download gff for BS11945.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11076-RB 399..933 17..551 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:23 Download gff for BS11945.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11076-RA 472..1006 17..551 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:23 Download gff for BS11945.5prime
Subject Subject Range Query Range Percent Splice Strand
4 1029970..1030504 17..551 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:08:27 Download gff for BS11945.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 1050596..1051130 17..551 100   Minus

BS11945.complete Sequence

566 bp assembled on 2006-11-01

GenBank Submission: FJ637028

> BS11945.complete
GAAGTTATCAGTCGACATGGGTCCCTATGCCCTCCGGAAAATTCCCTTTG
TCGGCTATGTGGTAATCAGCAAGCGTCTATATGATAAACAACCGCTACCA
GGTCAGAAGGAACATACAATTCAAGCTGATCTAACGCTACCCAAGTACCT
ATTACGAGAACGACATCCGTTGTTCGGGCGCAGCTACAAGCAACGCATCC
AATTACCGAAGATGATTTCCACATCTCTTAGTCAAGCAGACGAGAAATTC
TTGGAAGCTACTGCCAAGCTTCGCAGCACTGCTAACTACTACAAGATCCG
GAGCAAGCTGCACACCACCACACAGACGCTAGAACAAAAAGAGGACGATG
TGCGACAGTCGGTGCTTACCGGTCGTACGCCGCAGTTCATGAAGGAAACA
ATAATCCCGGATCTATATAAAGATCTCTTAGACGAAGAGGACATCGAGAA
AAATATAATGAACCCAGCAGAGGAAGTTGGTCCTGCCAAAATGCGCAAGA
AAAAATTTAATTCAAACGGTCACAAAACGGGAAATGCAGTAGGGAAATAG
AAGCTTTCTAGACCAT

BS11945.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:28:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG11076-RE 783 CG11076-PE 250..783 17..550 2670 100 Plus
CG11076-RD 783 CG11076-PD 250..783 17..550 2670 100 Plus
CG11076-RA 840 CG11076-PA 307..840 17..550 2670 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:28:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG11076-RE 1230 CG11076-RE 437..971 17..551 2675 100 Plus
CG11076-RD 1192 CG11076-RD 399..933 17..551 2675 100 Plus
CG11076-RA 1265 CG11076-RA 472..1006 17..551 2675 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:28:25
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 1029970..1030504 551..17 2675 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:28:26 has no hits.

BS11945.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:27 Download gff for BS11945.complete
Subject Subject Range Query Range Percent Splice Strand
CG11076-RA 307..840 17..550 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:44 Download gff for BS11945.complete
Subject Subject Range Query Range Percent Splice Strand
CG11076-RA 468..1002 17..551 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:15:58 Download gff for BS11945.complete
Subject Subject Range Query Range Percent Splice Strand
CG11076-RB 399..926 17..544 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:27 Download gff for BS11945.complete
Subject Subject Range Query Range Percent Splice Strand
CG11076-RA 468..1002 17..551 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:11:23 Download gff for BS11945.complete
Subject Subject Range Query Range Percent Splice Strand
CG11076-RA 472..999 17..544 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:11:23 Download gff for BS11945.complete
Subject Subject Range Query Range Percent Splice Strand
4 1029977..1030504 17..544 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:15:58 Download gff for BS11945.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 1050603..1051130 17..544 100   Minus

BS11945.pep Sequence

Translation from 16 to 549

> BS11945.pep
MGPYALRKIPFVGYVVISKRLYDKQPLPGQKEHTIQADLTLPKYLLRERH
PLFGRSYKQRIQLPKMISTSLSQADEKFLEATAKLRSTANYYKIRSKLHT
TTQTLEQKEDDVRQSVLTGRTPQFMKETIIPDLYKDLLDEEDIEKNIMNP
AEEVGPAKMRKKKFNSNGHKTGNAVGK*

BS11945.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11076-PE 260 CG11076-PE 84..260 1..177 911 100 Plus
CG11076-PD 260 CG11076-PD 84..260 1..177 911 100 Plus
CG11076-PA 279 CG11076-PA 103..279 1..177 911 100 Plus