Clone Sequence Records
BS11948.5prime Sequence
504 bp (504 high quality bases) assembled on 2006-06-16
> BS11948.5prime
GAAGTTATCAGTCGACATGTCCTTCGTTAAGAACGCCCGTTTGCTGGCCG
CCCGCGGCGCTCGCTTGGCCCAGAACCGCAGCTACTCGGATGAGATGAAG
CTGACCTTCGCCGCCGCCAACAAAACCTTCTACGATGCCGCTGTGGTGCG
CCAAATCGATGTGCCTTCCTTCTCGGGATCCTTCGGCATCCTGGCCAAGC
ACGTGCCCACTCTGGCTGTCCTGAAGCCCGGCGTTGTCCAGGTGGTGGAA
AACGATGGCAAGACCCTCAAGTTCTTCGTCTCCAGCGGTTCCGTCACCGT
CAACGAGGATTCCTCCGTTCAGGTTCTGGCCGAGGAGGCCCACAACATCG
AGGACATCGATGCCAATGAGGCGCGCCAGCTGCTCGCGAAATACCAGTCA
CAGCTTAGCTCCGCTGGCGACGACAAGGCCAAGGCCCAGGCTGCCATTGC
CGTGGAGGTCGCCGAAGCGTTAGTCAAGGCTGCCGAATAGAAGCTTTCTA
GACC
BS11948.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2968-PA | 474 | l(1)G0230-RA | 1..474 | 17..490 | 2370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:49:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0230-RC | 3817 | CG2968-RC | 112..586 | 17..491 | 2375 | 100 | Plus |
l(1)G0230-RB | 978 | CG2968-RB | 112..586 | 17..491 | 2375 | 100 | Plus |
l(1)G0230-RA | 666 | CG2968-RA | 112..586 | 17..491 | 2375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:49:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10213559..10213772 | 215..428 | 1070 | 100 | Plus |
X | 23542271 | X | 10213287..10213485 | 17..215 | 995 | 100 | Plus |
X | 23542271 | X | 10214097..10214162 | 426..491 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:49:22 has no hits.
BS11948.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:17 Download gff for
BS11948.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2968-PA | 1..474 | 17..490 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:06:44 Download gff for
BS11948.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0230-RA | 103..586 | 9..491 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:38:41 Download gff for
BS11948.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0230-RA | 103..586 | 9..491 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:38:41 Download gff for
BS11948.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10213278..10213485 | 9..215 | 98 | -> | Plus |
X | 10213560..10213771 | 216..427 | 100 | -> | Plus |
X | 10214099..10214162 | 428..491 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:06:44 Download gff for
BS11948.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10107311..10107518 | 9..215 | 98 | -> | Plus |
arm_X | 10107593..10107804 | 216..427 | 100 | -> | Plus |
arm_X | 10108132..10108195 | 428..491 | 100 | | Plus |
BS11948.3prime Sequence
504 bp (504 high quality bases) assembled on 2006-06-16
> BS11948.3prime
ATGGTCTAGAAAGCTTCTATTCGGCAGCCTTGACTAACGCTTCGGCGACC
TCCACGGCAATGGCAGCCTGGGCCTTGGCCTTGTCGTCGCCAGCGGAGCT
AAGCTGTGACTGGTATTTCGCGAGCAGCTGGCGCGCCTCATTGGCATCGA
TGTCCTCGATGTTGTGGGCCTCCTCGGCCAGAACCTGAACGGAGGAATCC
TCGTTGACGGTGACGGAACCGCTGGAGACGAAGAACTTGAGGGTCTTGCC
ATCGTTTTCCACCACCTGGACAACGCCGGGCTTCAGGACAGCCAGAGTGG
GCACGTGCTTGGCCAGGATGCCGAAGGATCCCGAGAAGGAAGGCACATCG
ATTTGGCGCACCACAGCGGCATCGTAGAAGGTTTTGTTGGCGGCGGCGAA
GGTCAGCTTCATCTCATCCGAGTAGCTGCGGTTCTGGGCCAAGCGAGCGC
CGCGGGCGGCCAGCAAACGGGCGTTCTTAACGAAGGACATGTCGACTGAT
AACT
BS11948.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2968-PA | 474 | l(1)G0230-RA | 1..474 | 490..17 | 2370 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:05:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0230-RC | 3817 | CG2968-RC | 112..586 | 490..16 | 2375 | 100 | Minus |
l(1)G0230-RB | 978 | CG2968-RB | 112..586 | 490..16 | 2375 | 100 | Minus |
l(1)G0230-RA | 666 | CG2968-RA | 112..586 | 490..16 | 2375 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:05:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10213559..10213772 | 292..79 | 1070 | 100 | Minus |
X | 23542271 | X | 10213287..10213485 | 490..292 | 995 | 100 | Minus |
X | 23542271 | X | 10214097..10214162 | 81..16 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:05:53 has no hits.
BS11948.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:17 Download gff for
BS11948.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2968-PA | 1..474 | 17..490 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 16:59:37 Download gff for
BS11948.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0230-RA | 103..586 | 16..498 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:49:19 Download gff for
BS11948.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0230-RA | 103..586 | 16..498 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:49:19 Download gff for
BS11948.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10213278..10213485 | 292..498 | 98 | -> | Minus |
X | 10213560..10213771 | 80..291 | 100 | -> | Minus |
X | 10214099..10214162 | 16..79 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 16:59:37 Download gff for
BS11948.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10107311..10107518 | 292..498 | 98 | -> | Minus |
arm_X | 10107593..10107804 | 80..291 | 100 | -> | Minus |
arm_X | 10108132..10108195 | 16..79 | 100 | | Minus |
BS11948.complete Sequence
506 bp assembled on 2006-11-01
GenBank Submission: FJ637029
> BS11948.complete
GAAGTTATCAGTCGACATGTCCTTCGTTAAGAACGCCCGTTTGCTGGCCG
CCCGCGGCGCTCGCTTGGCCCAGAACCGCAGCTACTCGGATGAGATGAAG
CTGACCTTCGCCGCCGCCAACAAAACCTTCTACGATGCCGCTGTGGTGCG
CCAAATCGATGTGCCTTCCTTCTCGGGATCCTTCGGCATCCTGGCCAAGC
ACGTGCCCACTCTGGCTGTCCTGAAGCCCGGCGTTGTCCAGGTGGTGGAA
AACGATGGCAAGACCCTCAAGTTCTTCGTCTCCAGCGGTTCCGTCACCGT
CAACGAGGATTCCTCCGTTCAGGTTCTGGCCGAGGAGGCCCACAACATCG
AGGACATCGATGCCAATGAGGCGCGCCAGCTGCTCGCGAAATACCAGTCA
CAGCTTAGCTCCGCTGGCGACGACAAGGCCAAGGCCCAGGCTGCCATTGC
CGTGGAGGTCGCCGAAGCGTTAGTCAAGGCTGCCGAATAGAAGCTTTCTA
GACCAT
BS11948.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:42:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0230-RC | 474 | CG2968-PC | 1..474 | 17..490 | 2370 | 100 | Plus |
l(1)G0230-RB | 474 | CG2968-PB | 1..474 | 17..490 | 2370 | 100 | Plus |
l(1)G0230-RA | 474 | CG2968-PA | 1..474 | 17..490 | 2370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:42:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0230-RC | 3817 | CG2968-RC | 112..586 | 17..491 | 2375 | 100 | Plus |
l(1)G0230-RB | 978 | CG2968-RB | 112..586 | 17..491 | 2375 | 100 | Plus |
l(1)G0230-RA | 666 | CG2968-RA | 112..586 | 17..491 | 2375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:42:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10213559..10213772 | 215..428 | 1070 | 100 | Plus |
X | 23542271 | X | 10213287..10213485 | 17..215 | 995 | 100 | Plus |
X | 23542271 | X | 10214097..10214162 | 426..491 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:42:13 has no hits.
BS11948.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:28 Download gff for
BS11948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0230-RA | 1..474 | 17..490 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:46 Download gff for
BS11948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0230-RA | 101..584 | 9..491 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:17 Download gff for
BS11948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0230-RA | 112..585 | 17..490 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:28 Download gff for
BS11948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0230-RA | 101..584 | 9..491 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:43 Download gff for
BS11948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0230-RA | 112..585 | 17..490 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:43 Download gff for
BS11948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10213287..10213485 | 17..215 | 100 | -> | Plus |
X | 10213560..10213771 | 216..427 | 100 | -> | Plus |
X | 10214099..10214161 | 428..490 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:17 Download gff for
BS11948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10108132..10108194 | 428..490 | 100 | | Plus |
arm_X | 10107320..10107518 | 17..215 | 100 | -> | Plus |
arm_X | 10107593..10107804 | 216..427 | 100 | -> | Plus |
BS11948.pep Sequence
Translation from 16 to 489
> BS11948.pep
MSFVKNARLLAARGARLAQNRSYSDEMKLTFAAANKTFYDAAVVRQIDVP
SFSGSFGILAKHVPTLAVLKPGVVQVVENDGKTLKFFVSSGSVTVNEDSS
VQVLAEEAHNIEDIDANEARQLLAKYQSQLSSAGDDKAKAQAAIAVEVAE
ALVKAAE*
BS11948.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0230-PC | 157 | CG2968-PC | 1..157 | 1..157 | 756 | 100 | Plus |
l(1)G0230-PB | 157 | CG2968-PB | 1..157 | 1..157 | 756 | 100 | Plus |
l(1)G0230-PA | 157 | CG2968-PA | 1..157 | 1..157 | 756 | 100 | Plus |