Clone BS11948 Report

Search the DGRC for BS11948

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:119
Well:48
Vector:pDNR-Dual
Associated Gene/Transcriptl(1)G0230-RA
Protein status:BS11948.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11948.5prime Sequence

504 bp (504 high quality bases) assembled on 2006-06-16

> BS11948.5prime
GAAGTTATCAGTCGACATGTCCTTCGTTAAGAACGCCCGTTTGCTGGCCG
CCCGCGGCGCTCGCTTGGCCCAGAACCGCAGCTACTCGGATGAGATGAAG
CTGACCTTCGCCGCCGCCAACAAAACCTTCTACGATGCCGCTGTGGTGCG
CCAAATCGATGTGCCTTCCTTCTCGGGATCCTTCGGCATCCTGGCCAAGC
ACGTGCCCACTCTGGCTGTCCTGAAGCCCGGCGTTGTCCAGGTGGTGGAA
AACGATGGCAAGACCCTCAAGTTCTTCGTCTCCAGCGGTTCCGTCACCGT
CAACGAGGATTCCTCCGTTCAGGTTCTGGCCGAGGAGGCCCACAACATCG
AGGACATCGATGCCAATGAGGCGCGCCAGCTGCTCGCGAAATACCAGTCA
CAGCTTAGCTCCGCTGGCGACGACAAGGCCAAGGCCCAGGCTGCCATTGC
CGTGGAGGTCGCCGAAGCGTTAGTCAAGGCTGCCGAATAGAAGCTTTCTA
GACC

BS11948.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG2968-PA 474 l(1)G0230-RA 1..474 17..490 2370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:49:25
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0230-RC 3817 CG2968-RC 112..586 17..491 2375 100 Plus
l(1)G0230-RB 978 CG2968-RB 112..586 17..491 2375 100 Plus
l(1)G0230-RA 666 CG2968-RA 112..586 17..491 2375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:49:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10213559..10213772 215..428 1070 100 Plus
X 23542271 X 10213287..10213485 17..215 995 100 Plus
X 23542271 X 10214097..10214162 426..491 330 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:49:22 has no hits.

BS11948.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:17 Download gff for BS11948.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2968-PA 1..474 17..490 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:06:44 Download gff for BS11948.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0230-RA 103..586 9..491 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:38:41 Download gff for BS11948.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0230-RA 103..586 9..491 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:38:41 Download gff for BS11948.5prime
Subject Subject Range Query Range Percent Splice Strand
X 10213278..10213485 9..215 98 -> Plus
X 10213560..10213771 216..427 100 -> Plus
X 10214099..10214162 428..491 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:06:44 Download gff for BS11948.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10107311..10107518 9..215 98 -> Plus
arm_X 10107593..10107804 216..427 100 -> Plus
arm_X 10108132..10108195 428..491 100   Plus

BS11948.3prime Sequence

504 bp (504 high quality bases) assembled on 2006-06-16

> BS11948.3prime
ATGGTCTAGAAAGCTTCTATTCGGCAGCCTTGACTAACGCTTCGGCGACC
TCCACGGCAATGGCAGCCTGGGCCTTGGCCTTGTCGTCGCCAGCGGAGCT
AAGCTGTGACTGGTATTTCGCGAGCAGCTGGCGCGCCTCATTGGCATCGA
TGTCCTCGATGTTGTGGGCCTCCTCGGCCAGAACCTGAACGGAGGAATCC
TCGTTGACGGTGACGGAACCGCTGGAGACGAAGAACTTGAGGGTCTTGCC
ATCGTTTTCCACCACCTGGACAACGCCGGGCTTCAGGACAGCCAGAGTGG
GCACGTGCTTGGCCAGGATGCCGAAGGATCCCGAGAAGGAAGGCACATCG
ATTTGGCGCACCACAGCGGCATCGTAGAAGGTTTTGTTGGCGGCGGCGAA
GGTCAGCTTCATCTCATCCGAGTAGCTGCGGTTCTGGGCCAAGCGAGCGC
CGCGGGCGGCCAGCAAACGGGCGTTCTTAACGAAGGACATGTCGACTGAT
AACT

BS11948.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG2968-PA 474 l(1)G0230-RA 1..474 490..17 2370 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:05:54
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0230-RC 3817 CG2968-RC 112..586 490..16 2375 100 Minus
l(1)G0230-RB 978 CG2968-RB 112..586 490..16 2375 100 Minus
l(1)G0230-RA 666 CG2968-RA 112..586 490..16 2375 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:05:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10213559..10213772 292..79 1070 100 Minus
X 23542271 X 10213287..10213485 490..292 995 100 Minus
X 23542271 X 10214097..10214162 81..16 330 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:05:53 has no hits.

BS11948.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:17 Download gff for BS11948.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2968-PA 1..474 17..490 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 16:59:37 Download gff for BS11948.3prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0230-RA 103..586 16..498 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:49:19 Download gff for BS11948.3prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0230-RA 103..586 16..498 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:49:19 Download gff for BS11948.3prime
Subject Subject Range Query Range Percent Splice Strand
X 10213278..10213485 292..498 98 -> Minus
X 10213560..10213771 80..291 100 -> Minus
X 10214099..10214162 16..79 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 16:59:37 Download gff for BS11948.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10107311..10107518 292..498 98 -> Minus
arm_X 10107593..10107804 80..291 100 -> Minus
arm_X 10108132..10108195 16..79 100   Minus

BS11948.complete Sequence

506 bp assembled on 2006-11-01

GenBank Submission: FJ637029

> BS11948.complete
GAAGTTATCAGTCGACATGTCCTTCGTTAAGAACGCCCGTTTGCTGGCCG
CCCGCGGCGCTCGCTTGGCCCAGAACCGCAGCTACTCGGATGAGATGAAG
CTGACCTTCGCCGCCGCCAACAAAACCTTCTACGATGCCGCTGTGGTGCG
CCAAATCGATGTGCCTTCCTTCTCGGGATCCTTCGGCATCCTGGCCAAGC
ACGTGCCCACTCTGGCTGTCCTGAAGCCCGGCGTTGTCCAGGTGGTGGAA
AACGATGGCAAGACCCTCAAGTTCTTCGTCTCCAGCGGTTCCGTCACCGT
CAACGAGGATTCCTCCGTTCAGGTTCTGGCCGAGGAGGCCCACAACATCG
AGGACATCGATGCCAATGAGGCGCGCCAGCTGCTCGCGAAATACCAGTCA
CAGCTTAGCTCCGCTGGCGACGACAAGGCCAAGGCCCAGGCTGCCATTGC
CGTGGAGGTCGCCGAAGCGTTAGTCAAGGCTGCCGAATAGAAGCTTTCTA
GACCAT

BS11948.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:42:14
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0230-RC 474 CG2968-PC 1..474 17..490 2370 100 Plus
l(1)G0230-RB 474 CG2968-PB 1..474 17..490 2370 100 Plus
l(1)G0230-RA 474 CG2968-PA 1..474 17..490 2370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:42:16
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0230-RC 3817 CG2968-RC 112..586 17..491 2375 100 Plus
l(1)G0230-RB 978 CG2968-RB 112..586 17..491 2375 100 Plus
l(1)G0230-RA 666 CG2968-RA 112..586 17..491 2375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:42:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10213559..10213772 215..428 1070 100 Plus
X 23542271 X 10213287..10213485 17..215 995 100 Plus
X 23542271 X 10214097..10214162 426..491 330 100 Plus
Blast to na_te.dros performed on 2014-11-27 19:42:13 has no hits.

BS11948.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:28 Download gff for BS11948.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0230-RA 1..474 17..490 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:46 Download gff for BS11948.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0230-RA 101..584 9..491 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:17 Download gff for BS11948.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0230-RA 112..585 17..490 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:28 Download gff for BS11948.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0230-RA 101..584 9..491 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:43 Download gff for BS11948.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0230-RA 112..585 17..490 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:43 Download gff for BS11948.complete
Subject Subject Range Query Range Percent Splice Strand
X 10213287..10213485 17..215 100 -> Plus
X 10213560..10213771 216..427 100 -> Plus
X 10214099..10214161 428..490 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:17 Download gff for BS11948.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10108132..10108194 428..490 100   Plus
arm_X 10107320..10107518 17..215 100 -> Plus
arm_X 10107593..10107804 216..427 100 -> Plus

BS11948.pep Sequence

Translation from 16 to 489

> BS11948.pep
MSFVKNARLLAARGARLAQNRSYSDEMKLTFAAANKTFYDAAVVRQIDVP
SFSGSFGILAKHVPTLAVLKPGVVQVVENDGKTLKFFVSSGSVTVNEDSS
VQVLAEEAHNIEDIDANEARQLLAKYQSQLSSAGDDKAKAQAAIAVEVAE
ALVKAAE*

BS11948.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:34
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0230-PC 157 CG2968-PC 1..157 1..157 756 100 Plus
l(1)G0230-PB 157 CG2968-PB 1..157 1..157 756 100 Plus
l(1)G0230-PA 157 CG2968-PA 1..157 1..157 756 100 Plus