Clone BS11949 Report

Search the DGRC for BS11949

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:119
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptCG15022-RA
Protein status:BS11949.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11949.5prime Sequence

696 bp (695 high quality bases) assembled on 2006-06-16

> BS11949.5prime
GAAGTTATCAGTCGACATGAAACCCATGCTGATCCTTTTGGCTCTGGCAG
GCTTTGCCATCTGTATTCGGGCAGACGTGTCCCACCTGTACGGAGGAGGT
TACCACGATCACGGCCATGATCACCATCACCACCATGATCACGATCACGA
TCATGATCACCACCACTATGATGTCCATTCCCACCACCATTCTCCCTCGT
CACACGATCATCATGATCTGCACATTGATCTGCACTATCAGCCGGATCAC
CACCATCATCATCATCAAGAGGCCAAGTTCGATATCCCTAGCGGATATAG
CTATGGACCTCCAGAGAAACCTCGCCAGAAGTACCTGCCGCCCAAGGTTT
CCCTGCCACCGCCACCACCTCCACCGCCCAAGGCAACTTATCTGCCTCCC
TCAAAGCCTGAAGTGAAGTACCTGCCCCCCGAGCCGGTGGCCAAGTATCT
GCCACCCAAGGTCGCTCCCAGCCTGCCTCCTCCACCACCACCTCCAGTTG
TGGCGCCCAAGCCCACATATCTGCCTCCCAGTCCGCCAGAGTCCAAGTAC
CTTCCTCCTCCGACGCCCGAGGTGAAGTATCTGCCACCTGCTCCAGTGGC
AAGGTATCTGCCACCCAAGGTTGCACCCAGTCTGCCACCACCACCTCCAC
CCCCACCAGTGGCTCCCAAGAAGCTGTATCTTCCTCCTGCCGAGCC

BS11949.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG15022-PA 888 CG15022-RA 1..680 17..696 3375 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:30:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG15022-RA 1063 CG15022-RA 71..750 17..696 3385 99.9 Plus
CG15022-RA 1063 CG15022-RA 619..802 406..589 230 76.3 Plus
CG15022-RA 1063 CG15022-RA 460..565 565..670 215 80.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:30:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4459506..4460183 696..19 3375 99.9 Minus
3L 28110227 3L 4459532..4459637 511..406 215 80.2 Minus
3L 28110227 3L 4459691..4459796 670..565 215 80.2 Minus
Blast to na_te.dros performed on 2015-02-03 06:30:56 has no hits.

BS11949.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:18 Download gff for BS11949.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15022-PA 1..680 17..696 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:22 Download gff for BS11949.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15022-RA 62..750 5..696 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:06 Download gff for BS11949.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15022-RA 62..750 5..696 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:06 Download gff for BS11949.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4459506..4460186 15..696 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:22 Download gff for BS11949.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4459506..4460186 15..696 99   Minus

BS11949.complete Sequence

920 bp assembled on 2006-11-01

GenBank Submission: FJ637030

> BS11949.complete
GAAGTTATCAGTCGACATGAAACCCATGCTGATCCTTTTGGCTCTGGCAG
GCTTTGCCATCTGTATTCGGGCAGACGTGTCCCACCTGTACGGAGGAGGT
TACCACGATCACGGCCATGATCACCATCACCACCATGATCACGATCACGA
TCATGATCACCACCACTATGATGTCCATTCCCACCACCATTCTCCCTCGT
CACACGATCATCATGATCTGCACATTGATCTGCACTATCAGCCGGATCAC
CACCATCATCATCATCAAGAGGCCAAGTTCGATATCCCTAGCGGATATAG
CTATGGACCTCCAGAGAAACCTCGCCAGAAGTACCTGCCGCCCAAGGTTT
CCCTGCCACCGCCACCACCTCCACCGCCCAAGGCAACTTATCTGCCTCCC
TCAAAGCCTGAAGTGAAGTACCTGCCCCCCGAGCCGGTGGCCAAGTATCT
GCCACCCAAGGTCGCTCCCAGCCTGCCTCCTCCACCACCACCTCCAGTTG
TGGCGCCCAAGCCCACATATCTGCCTCCCAGTCCGCCAGAGTCCAAGTAC
CTTCCTCCTCCGACGCCCGAGGTGAAGTATCTGCCACCTGCTCCAGTGGC
AAGGTATCTGCCACCCAAGGTTGCACCCAGTCTGCCACCACCACCTCCAC
CCCCACCAGTGGCTCCCAAGAAGCTGTATCTTCCTCCTGCCGAGCCGGAG
ACTAAGTACCTGCCACCTTCCGAGCCCGTCGAGAAGTATCTGCCTCCTAA
GCCCGAACAAAAATATCTGCCACCCCAGCCTGAGGTAGATTTCCACATAC
CGATTCCATCCTATGCACTGCCCTTGGGCCCTGCACCAAGTCCAATCCAC
GACGCCGAGCCTGGTTACCACTACAAGCCTCCACTTCGCCGTTTCAGGCA
TTAGAAGCTTTCTAGACCAT

BS11949.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:35:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG15022-RA 888 CG15022-PA 1..888 17..904 4425 99.9 Plus
CG15022-RA 888 CG15022-PA 390..495 565..670 215 80.2 Plus
CG15022-RA 888 CG15022-PA 549..654 406..511 215 80.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:35:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG15022-RA 1063 CG15022-RA 71..958 17..904 4425 99.9 Plus
CG15022-RA 1063 CG15022-RA 460..565 565..670 215 80.2 Plus
CG15022-RA 1063 CG15022-RA 619..724 406..511 215 80.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:35:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4459298..4460183 904..19 4415 99.9 Minus
3L 28110227 3L 4459532..4459637 511..406 215 80.2 Minus
3L 28110227 3L 4459691..4459796 670..565 215 80.2 Minus
Blast to na_te.dros performed on 2014-11-27 23:35:43 has no hits.

BS11949.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:07 Download gff for BS11949.complete
Subject Subject Range Query Range Percent Splice Strand
CG15022-RA 1..888 17..904 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:20 Download gff for BS11949.complete
Subject Subject Range Query Range Percent Splice Strand
CG15022-RA 58..954 5..904 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:32:53 Download gff for BS11949.complete
Subject Subject Range Query Range Percent Splice Strand
CG15022-RA 71..958 17..904 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:07 Download gff for BS11949.complete
Subject Subject Range Query Range Percent Splice Strand
CG15022-RA 58..954 5..904 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:09 Download gff for BS11949.complete
Subject Subject Range Query Range Percent Splice Strand
CG15022-RA 71..958 17..904 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:09 Download gff for BS11949.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4459298..4460184 17..904 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:32:53 Download gff for BS11949.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4459298..4460184 17..904 99   Minus

BS11949.pep Sequence

Translation from 16 to 903

> BS11949.pep
MKPMLILLALAGFAICIRADVSHLYGGGYHDHGHDHHHHHDHDHDHDHHH
YDVHSHHHSPSSHDHHDLHIDLHYQPDHHHHHHQEAKFDIPSGYSYGPPE
KPRQKYLPPKVSLPPPPPPPPKATYLPPSKPEVKYLPPEPVAKYLPPKVA
PSLPPPPPPPVVAPKPTYLPPSPPESKYLPPPTPEVKYLPPAPVARYLPP
KVAPSLPPPPPPPPVAPKKLYLPPAEPETKYLPPSEPVEKYLPPKPEQKY
LPPQPEVDFHIPIPSYALPLGPAPSPIHDAEPGYHYKPPLRRFRH*

BS11949.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG15022-PA 295 CG15022-PA 1..295 1..295 1728 100 Plus
CG13722-PB 708 CG13722-PB 319..544 90..289 371 40.9 Plus
CG13722-PB 708 CG13722-PB 173..463 90..289 369 36.2 Plus
CG13722-PB 708 CG13722-PB 366..610 90..290 361 37.1 Plus
CG11345-PA 242 CG11345-PA 25..240 77..293 347 40.3 Plus
CG13722-PB 708 CG13722-PB 414..687 75..293 343 35.4 Plus
CG15021-PA 420 CG15021-PA 17..239 65..284 325 37 Plus
CG15021-PA 420 CG15021-PA 114..317 91..289 304 35.3 Plus
CG32241-PB 415 CG32241-PB 91..371 77..292 299 33.4 Plus
CG13722-PB 708 CG13722-PB 535..706 90..259 289 38.9 Plus
CG13722-PB 708 CG13722-PB 524..705 91..267 287 38 Plus
CG13722-PB 708 CG13722-PB 59..282 92..289 269 35.8 Plus
CG15021-PA 420 CG15021-PA 188..418 93..293 265 35.1 Plus
CG13722-PB 708 CG13722-PB 17..219 85..289 180 29.7 Plus
CG15021-PA 420 CG15021-PA 279..392 91..224 174 38 Plus