Clone Sequence Records
BS11949.5prime Sequence
696 bp (695 high quality bases) assembled on 2006-06-16
> BS11949.5prime
GAAGTTATCAGTCGACATGAAACCCATGCTGATCCTTTTGGCTCTGGCAG
GCTTTGCCATCTGTATTCGGGCAGACGTGTCCCACCTGTACGGAGGAGGT
TACCACGATCACGGCCATGATCACCATCACCACCATGATCACGATCACGA
TCATGATCACCACCACTATGATGTCCATTCCCACCACCATTCTCCCTCGT
CACACGATCATCATGATCTGCACATTGATCTGCACTATCAGCCGGATCAC
CACCATCATCATCATCAAGAGGCCAAGTTCGATATCCCTAGCGGATATAG
CTATGGACCTCCAGAGAAACCTCGCCAGAAGTACCTGCCGCCCAAGGTTT
CCCTGCCACCGCCACCACCTCCACCGCCCAAGGCAACTTATCTGCCTCCC
TCAAAGCCTGAAGTGAAGTACCTGCCCCCCGAGCCGGTGGCCAAGTATCT
GCCACCCAAGGTCGCTCCCAGCCTGCCTCCTCCACCACCACCTCCAGTTG
TGGCGCCCAAGCCCACATATCTGCCTCCCAGTCCGCCAGAGTCCAAGTAC
CTTCCTCCTCCGACGCCCGAGGTGAAGTATCTGCCACCTGCTCCAGTGGC
AAGGTATCTGCCACCCAAGGTTGCACCCAGTCTGCCACCACCACCTCCAC
CCCCACCAGTGGCTCCCAAGAAGCTGTATCTTCCTCCTGCCGAGCC
BS11949.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15022-PA | 888 | CG15022-RA | 1..680 | 17..696 | 3375 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:30:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15022-RA | 1063 | CG15022-RA | 71..750 | 17..696 | 3385 | 99.9 | Plus |
CG15022-RA | 1063 | CG15022-RA | 619..802 | 406..589 | 230 | 76.3 | Plus |
CG15022-RA | 1063 | CG15022-RA | 460..565 | 565..670 | 215 | 80.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:30:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4459506..4460183 | 696..19 | 3375 | 99.9 | Minus |
3L | 28110227 | 3L | 4459532..4459637 | 511..406 | 215 | 80.2 | Minus |
3L | 28110227 | 3L | 4459691..4459796 | 670..565 | 215 | 80.2 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:30:56 has no hits.
BS11949.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:18 Download gff for
BS11949.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15022-PA | 1..680 | 17..696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:22 Download gff for
BS11949.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15022-RA | 62..750 | 5..696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:06 Download gff for
BS11949.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15022-RA | 62..750 | 5..696 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:06 Download gff for
BS11949.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4459506..4460186 | 15..696 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:22 Download gff for
BS11949.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4459506..4460186 | 15..696 | 99 | | Minus |
BS11949.complete Sequence
920 bp assembled on 2006-11-01
GenBank Submission: FJ637030
> BS11949.complete
GAAGTTATCAGTCGACATGAAACCCATGCTGATCCTTTTGGCTCTGGCAG
GCTTTGCCATCTGTATTCGGGCAGACGTGTCCCACCTGTACGGAGGAGGT
TACCACGATCACGGCCATGATCACCATCACCACCATGATCACGATCACGA
TCATGATCACCACCACTATGATGTCCATTCCCACCACCATTCTCCCTCGT
CACACGATCATCATGATCTGCACATTGATCTGCACTATCAGCCGGATCAC
CACCATCATCATCATCAAGAGGCCAAGTTCGATATCCCTAGCGGATATAG
CTATGGACCTCCAGAGAAACCTCGCCAGAAGTACCTGCCGCCCAAGGTTT
CCCTGCCACCGCCACCACCTCCACCGCCCAAGGCAACTTATCTGCCTCCC
TCAAAGCCTGAAGTGAAGTACCTGCCCCCCGAGCCGGTGGCCAAGTATCT
GCCACCCAAGGTCGCTCCCAGCCTGCCTCCTCCACCACCACCTCCAGTTG
TGGCGCCCAAGCCCACATATCTGCCTCCCAGTCCGCCAGAGTCCAAGTAC
CTTCCTCCTCCGACGCCCGAGGTGAAGTATCTGCCACCTGCTCCAGTGGC
AAGGTATCTGCCACCCAAGGTTGCACCCAGTCTGCCACCACCACCTCCAC
CCCCACCAGTGGCTCCCAAGAAGCTGTATCTTCCTCCTGCCGAGCCGGAG
ACTAAGTACCTGCCACCTTCCGAGCCCGTCGAGAAGTATCTGCCTCCTAA
GCCCGAACAAAAATATCTGCCACCCCAGCCTGAGGTAGATTTCCACATAC
CGATTCCATCCTATGCACTGCCCTTGGGCCCTGCACCAAGTCCAATCCAC
GACGCCGAGCCTGGTTACCACTACAAGCCTCCACTTCGCCGTTTCAGGCA
TTAGAAGCTTTCTAGACCAT
BS11949.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:35:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15022-RA | 888 | CG15022-PA | 1..888 | 17..904 | 4425 | 99.9 | Plus |
CG15022-RA | 888 | CG15022-PA | 390..495 | 565..670 | 215 | 80.2 | Plus |
CG15022-RA | 888 | CG15022-PA | 549..654 | 406..511 | 215 | 80.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:35:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15022-RA | 1063 | CG15022-RA | 71..958 | 17..904 | 4425 | 99.9 | Plus |
CG15022-RA | 1063 | CG15022-RA | 460..565 | 565..670 | 215 | 80.2 | Plus |
CG15022-RA | 1063 | CG15022-RA | 619..724 | 406..511 | 215 | 80.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:35:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4459298..4460183 | 904..19 | 4415 | 99.9 | Minus |
3L | 28110227 | 3L | 4459532..4459637 | 511..406 | 215 | 80.2 | Minus |
3L | 28110227 | 3L | 4459691..4459796 | 670..565 | 215 | 80.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:35:43 has no hits.
BS11949.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:07 Download gff for
BS11949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15022-RA | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:20 Download gff for
BS11949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15022-RA | 58..954 | 5..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:32:53 Download gff for
BS11949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15022-RA | 71..958 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:07 Download gff for
BS11949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15022-RA | 58..954 | 5..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:09 Download gff for
BS11949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15022-RA | 71..958 | 17..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:09 Download gff for
BS11949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4459298..4460184 | 17..904 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:32:53 Download gff for
BS11949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4459298..4460184 | 17..904 | 99 | | Minus |
BS11949.pep Sequence
Translation from 16 to 903
> BS11949.pep
MKPMLILLALAGFAICIRADVSHLYGGGYHDHGHDHHHHHDHDHDHDHHH
YDVHSHHHSPSSHDHHDLHIDLHYQPDHHHHHHQEAKFDIPSGYSYGPPE
KPRQKYLPPKVSLPPPPPPPPKATYLPPSKPEVKYLPPEPVAKYLPPKVA
PSLPPPPPPPVVAPKPTYLPPSPPESKYLPPPTPEVKYLPPAPVARYLPP
KVAPSLPPPPPPPPVAPKKLYLPPAEPETKYLPPSEPVEKYLPPKPEQKY
LPPQPEVDFHIPIPSYALPLGPAPSPIHDAEPGYHYKPPLRRFRH*
BS11949.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15022-PA | 295 | CG15022-PA | 1..295 | 1..295 | 1728 | 100 | Plus |
CG13722-PB | 708 | CG13722-PB | 319..544 | 90..289 | 371 | 40.9 | Plus |
CG13722-PB | 708 | CG13722-PB | 173..463 | 90..289 | 369 | 36.2 | Plus |
CG13722-PB | 708 | CG13722-PB | 366..610 | 90..290 | 361 | 37.1 | Plus |
CG11345-PA | 242 | CG11345-PA | 25..240 | 77..293 | 347 | 40.3 | Plus |
CG13722-PB | 708 | CG13722-PB | 414..687 | 75..293 | 343 | 35.4 | Plus |
CG15021-PA | 420 | CG15021-PA | 17..239 | 65..284 | 325 | 37 | Plus |
CG15021-PA | 420 | CG15021-PA | 114..317 | 91..289 | 304 | 35.3 | Plus |
CG32241-PB | 415 | CG32241-PB | 91..371 | 77..292 | 299 | 33.4 | Plus |
CG13722-PB | 708 | CG13722-PB | 535..706 | 90..259 | 289 | 38.9 | Plus |
CG13722-PB | 708 | CG13722-PB | 524..705 | 91..267 | 287 | 38 | Plus |
CG13722-PB | 708 | CG13722-PB | 59..282 | 92..289 | 269 | 35.8 | Plus |
CG15021-PA | 420 | CG15021-PA | 188..418 | 93..293 | 265 | 35.1 | Plus |
CG13722-PB | 708 | CG13722-PB | 17..219 | 85..289 | 180 | 29.7 | Plus |
CG15021-PA | 420 | CG15021-PA | 279..392 | 91..224 | 174 | 38 | Plus |