Clone BS11950 Report

Search the DGRC for BS11950

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:119
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptCG7299-RA
Protein status:BS11950.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11950.3prime Sequence

564 bp (564 high quality bases) assembled on 2006-06-16

> BS11950.3prime
ATGGTCTAGAAAGCTTTTATTTGCGGAATGCGTTGGCGACGGCATTGGCG
TTAGCATTAGCACTGCCACCTCGGGTGTTGGCATTGGCATTGGCGTTTGC
ATTGGCATTACCACCGCCAAATCCTCCGTCAGAGTTGGCGACAGCATTGG
CATTGGCGTTAGCTTCGGAGTTACCACCGAATCCTCCTGGTCCTCCTGGT
CCTCCGAATCCTCCTGGTCCTCCGAATCCACCCTGTCCTCCGAATCCACC
CTGTCCTCCGAATCCACCCTGTCCGCCGAATCCACCTTGTCCTTCAAAGC
CACCTGGTCCTCCGAATCCACCTTGTCCTGGCCCTCCGAATCCACCCTGT
CCTCCGAATCCAGGGCCTCGTTCCCCGAATCCTCCTCCGAATCCGCCTTC
CTTCTGGAAACCAGGTCCGCTGAATCCTGGTCTTCCACCGCCCTCACTCT
CAGCATTTGCGTTGGCATTTGCGTTAGCATTGCCATTATTAAACTGCGGG
GCGGCACTGGACACGGCCAGGATTACGGCGAGAACGACAAAGACCTTCAT
GTCGACTGATAACT

BS11950.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7299-PA 534 CG7299-RA 1..534 550..17 2670 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:38:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG7299-RC 983 CG7299-RC 37..571 551..17 2675 100 Minus
CG7299-RA 643 CG7299-RA 37..571 551..17 2675 100 Minus
CG7299-RC 983 CG7299-RC 265..389 386..253 220 79.1 Minus
CG7299-RA 643 CG7299-RA 265..389 386..253 220 79.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:38:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10683839..10684373 17..551 2675 100 Plus
2L 23513712 2L 10684021..10684115 235..329 310 88.4 Plus
2L 23513712 2L 10684057..10684151 199..293 310 88.4 Plus
2L 23513712 2L 10684021..10684096 253..328 215 85.5 Plus
Blast to na_te.dros performed on 2015-01-30 17:38:33 has no hits.

BS11950.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:19 Download gff for BS11950.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7299-PA 1..534 17..550 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:48:30 Download gff for BS11950.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7299-RA 29..573 13..558 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:03:47 Download gff for BS11950.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7299-RA 29..573 13..558 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:03:47 Download gff for BS11950.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10683837..10684381 13..558 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:48:30 Download gff for BS11950.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10683837..10684381 13..558 99   Plus

BS11950.5prime Sequence

564 bp (564 high quality bases) assembled on 2006-06-16

> BS11950.5prime
GAAGTTATCAGTCGACATGAAGGTCTTTGTCGTTCTCGCCGTAATCCTGG
CCGTGTCCAGTGCCGCCCCGCAGTTTAATAATGGCAATGCTAACGCAAAT
GCCAACGCAAATGCTGAGAGTGAGGGCGGTGGAAGACCAGGATTCAGCGG
ACCTGGTTTCCAGAAGGAAGGCGGATTCGGAGGAGGATTCGGGGAACGAG
GCCCTGGATTCGGAGGACAGGGTGGATTCGGAGGGCCAGGACAAGGTGGA
TTCGGAGGACCAGGTGGCTTTGAAGGACAAGGTGGATTCGGCGGACAGGG
TGGATTCGGAGGACAGGGTGGATTCGGAGGACAGGGTGGATTCGGAGGAC
CAGGAGGATTCGGAGGACCAGGAGGACCAGGAGGATTCGGTGGTAACTCC
GAAGCTAACGCCAATGCCAATGCTGTCGCCAACTCTGACGGAGGATTTGG
CGGTGGTAATGCCAATGCAAACGCCAATGCCAATGCCAACACCCGAGGTG
GCAGTGCTAATGCTAACGCCAATGCCGTCGCCAACGCATTCCGCAAATAA
AAGCTTTCTAGACC

BS11950.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7299-PA 534 CG7299-RA 1..534 17..550 2670 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:11:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7299-RC 983 CG7299-RC 37..571 16..550 2675 100 Plus
CG7299-RA 643 CG7299-RA 37..571 16..550 2675 100 Plus
CG7299-RC 983 CG7299-RC 265..389 181..314 220 79.1 Plus
CG7299-RA 643 CG7299-RA 265..389 181..314 220 79.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:11:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10683839..10684373 550..16 2675 100 Minus
2L 23513712 2L 10684021..10684115 332..238 310 88.4 Minus
2L 23513712 2L 10684057..10684151 368..274 310 88.4 Minus
2L 23513712 2L 10684021..10684096 314..239 215 85.5 Minus
Blast to na_te.dros performed on 2015-02-06 10:11:48 has no hits.

BS11950.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:19 Download gff for BS11950.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7299-PA 1..534 17..550 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:39:00 Download gff for BS11950.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7299-RA 29..573 9..554 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:27 Download gff for BS11950.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7299-RA 29..573 9..554 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:27 Download gff for BS11950.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10683837..10684381 9..554 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:39:00 Download gff for BS11950.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10683837..10684381 9..554 99   Minus

BS11950.complete Sequence

566 bp assembled on 2006-11-01

GenBank Submission: FJ637031

> BS11950.complete
GAAGTTATCAGTCGACATGAAGGTCTTTGTCGTTCTCGCCGTAATCCTGG
CCGTGTCCAGTGCCGCCCCGCAGTTTAATAATGGCAATGCTAACGCAAAT
GCCAACGCAAATGCTGAGAGTGAGGGCGGTGGAAGACCAGGATTCAGCGG
ACCTGGTTTCCAGAAGGAAGGCGGATTCGGAGGAGGATTCGGGGAACGAG
GCCCTGGATTCGGAGGACAGGGTGGATTCGGAGGGCCAGGACAAGGTGGA
TTCGGAGGACCAGGTGGCTTTGAAGGACAAGGTGGATTCGGCGGACAGGG
TGGATTCGGAGGACAGGGTGGATTCGGAGGACAGGGTGGATTCGGAGGAC
CAGGAGGATTCGGAGGACCAGGAGGACCAGGAGGATTCGGTGGTAACTCC
GAAGCTAACGCCAATGCCAATGCTGTCGCCAACTCTGACGGAGGATTTGG
CGGTGGTAATGCCAATGCAAACGCCAATGCCAATGCCAACACCCGAGGTG
GCAGTGCTAATGCTAACGCCAATGCCGTCGCCAACGCATTCCGCAAATAA
AAGCTTTCTAGACCAT

BS11950.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:20:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG7299-RC 534 CG7299-PC 1..534 17..550 2670 100 Plus
CG7299-RA 534 CG7299-PA 1..534 17..550 2670 100 Plus
CG7299-RC 534 CG7299-PC 222..316 274..368 310 88.4 Plus
CG7299-RC 534 CG7299-PC 258..352 238..332 310 88.4 Plus
CG7299-RA 534 CG7299-PA 222..316 274..368 310 88.4 Plus
CG7299-RA 534 CG7299-PA 258..352 238..332 310 88.4 Plus
CG7299-RC 534 CG7299-PC 277..352 239..314 215 85.5 Plus
CG7299-RA 534 CG7299-PA 277..352 239..314 215 85.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:20:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7299-RC 983 CG7299-RC 37..571 16..550 2675 100 Plus
CG7299-RA 643 CG7299-RA 37..571 16..550 2675 100 Plus
CG7299-RC 983 CG7299-RC 295..389 238..332 310 88.4 Plus
CG7299-RC 983 CG7299-RC 259..353 274..368 310 88.4 Plus
CG7299-RA 643 CG7299-RA 259..353 274..368 310 88.4 Plus
CG7299-RA 643 CG7299-RA 295..389 238..332 310 88.4 Plus
CG7299-RC 983 CG7299-RC 314..389 239..314 215 85.5 Plus
CG7299-RA 643 CG7299-RA 314..389 239..314 215 85.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10683839..10684373 550..16 2675 100 Minus
2L 23513712 2L 10684021..10684115 332..238 310 88.4 Minus
2L 23513712 2L 10684057..10684151 368..274 310 88.4 Minus
2L 23513712 2L 10684021..10684096 314..239 215 85.5 Minus
Blast to na_te.dros performed on 2014-11-27 16:20:32 has no hits.

BS11950.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:08 Download gff for BS11950.complete
Subject Subject Range Query Range Percent Splice Strand
CG7299-RA 1..534 17..550 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:21 Download gff for BS11950.complete
Subject Subject Range Query Range Percent Splice Strand
CG7299-RA 27..571 9..554 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:37 Download gff for BS11950.complete
Subject Subject Range Query Range Percent Splice Strand
CG7299-RA 38..569 17..548 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:08 Download gff for BS11950.complete
Subject Subject Range Query Range Percent Splice Strand
CG7299-RA 27..571 9..554 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:22 Download gff for BS11950.complete
Subject Subject Range Query Range Percent Splice Strand
CG7299-RA 38..569 17..548 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:22 Download gff for BS11950.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10683841..10684372 17..548 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:37 Download gff for BS11950.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10683841..10684372 17..548 100   Minus

BS11950.pep Sequence

Translation from 16 to 549

> BS11950.pep
MKVFVVLAVILAVSSAAPQFNNGNANANANANAESEGGGRPGFSGPGFQK
EGGFGGGFGERGPGFGGQGGFGGPGQGGFGGPGGFEGQGGFGGQGGFGGQ
GGFGGQGGFGGPGGFGGPGGPGGFGGNSEANANANAVANSDGGFGGGNAN
ANANANANTRGGSANANANAVANAFRK*

BS11950.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG7299-PC 177 CG7299-PC 1..177 1..177 964 100 Plus
CG7299-PA 177 CG7299-PA 1..177 1..177 964 100 Plus
CG7296-PB 161 CG7296-PB 1..158 1..161 401 56 Plus
CG7296-PA 161 CG7296-PA 1..158 1..161 401 56 Plus
CG8157-PB 113 CG8157-PB 1..100 1..125 277 51.9 Plus