Clone Sequence Records
BS11950.3prime Sequence
564 bp (564 high quality bases) assembled on 2006-06-16
> BS11950.3prime
ATGGTCTAGAAAGCTTTTATTTGCGGAATGCGTTGGCGACGGCATTGGCG
TTAGCATTAGCACTGCCACCTCGGGTGTTGGCATTGGCATTGGCGTTTGC
ATTGGCATTACCACCGCCAAATCCTCCGTCAGAGTTGGCGACAGCATTGG
CATTGGCGTTAGCTTCGGAGTTACCACCGAATCCTCCTGGTCCTCCTGGT
CCTCCGAATCCTCCTGGTCCTCCGAATCCACCCTGTCCTCCGAATCCACC
CTGTCCTCCGAATCCACCCTGTCCGCCGAATCCACCTTGTCCTTCAAAGC
CACCTGGTCCTCCGAATCCACCTTGTCCTGGCCCTCCGAATCCACCCTGT
CCTCCGAATCCAGGGCCTCGTTCCCCGAATCCTCCTCCGAATCCGCCTTC
CTTCTGGAAACCAGGTCCGCTGAATCCTGGTCTTCCACCGCCCTCACTCT
CAGCATTTGCGTTGGCATTTGCGTTAGCATTGCCATTATTAAACTGCGGG
GCGGCACTGGACACGGCCAGGATTACGGCGAGAACGACAAAGACCTTCAT
GTCGACTGATAACT
BS11950.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7299-PA | 534 | CG7299-RA | 1..534 | 550..17 | 2670 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:38:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7299-RC | 983 | CG7299-RC | 37..571 | 551..17 | 2675 | 100 | Minus |
CG7299-RA | 643 | CG7299-RA | 37..571 | 551..17 | 2675 | 100 | Minus |
CG7299-RC | 983 | CG7299-RC | 265..389 | 386..253 | 220 | 79.1 | Minus |
CG7299-RA | 643 | CG7299-RA | 265..389 | 386..253 | 220 | 79.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:38:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10683839..10684373 | 17..551 | 2675 | 100 | Plus |
2L | 23513712 | 2L | 10684021..10684115 | 235..329 | 310 | 88.4 | Plus |
2L | 23513712 | 2L | 10684057..10684151 | 199..293 | 310 | 88.4 | Plus |
2L | 23513712 | 2L | 10684021..10684096 | 253..328 | 215 | 85.5 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:38:33 has no hits.
BS11950.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:19 Download gff for
BS11950.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7299-PA | 1..534 | 17..550 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:48:30 Download gff for
BS11950.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7299-RA | 29..573 | 13..558 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:03:47 Download gff for
BS11950.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7299-RA | 29..573 | 13..558 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:03:47 Download gff for
BS11950.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10683837..10684381 | 13..558 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:48:30 Download gff for
BS11950.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10683837..10684381 | 13..558 | 99 | | Plus |
BS11950.5prime Sequence
564 bp (564 high quality bases) assembled on 2006-06-16
> BS11950.5prime
GAAGTTATCAGTCGACATGAAGGTCTTTGTCGTTCTCGCCGTAATCCTGG
CCGTGTCCAGTGCCGCCCCGCAGTTTAATAATGGCAATGCTAACGCAAAT
GCCAACGCAAATGCTGAGAGTGAGGGCGGTGGAAGACCAGGATTCAGCGG
ACCTGGTTTCCAGAAGGAAGGCGGATTCGGAGGAGGATTCGGGGAACGAG
GCCCTGGATTCGGAGGACAGGGTGGATTCGGAGGGCCAGGACAAGGTGGA
TTCGGAGGACCAGGTGGCTTTGAAGGACAAGGTGGATTCGGCGGACAGGG
TGGATTCGGAGGACAGGGTGGATTCGGAGGACAGGGTGGATTCGGAGGAC
CAGGAGGATTCGGAGGACCAGGAGGACCAGGAGGATTCGGTGGTAACTCC
GAAGCTAACGCCAATGCCAATGCTGTCGCCAACTCTGACGGAGGATTTGG
CGGTGGTAATGCCAATGCAAACGCCAATGCCAATGCCAACACCCGAGGTG
GCAGTGCTAATGCTAACGCCAATGCCGTCGCCAACGCATTCCGCAAATAA
AAGCTTTCTAGACC
BS11950.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7299-PA | 534 | CG7299-RA | 1..534 | 17..550 | 2670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:11:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7299-RC | 983 | CG7299-RC | 37..571 | 16..550 | 2675 | 100 | Plus |
CG7299-RA | 643 | CG7299-RA | 37..571 | 16..550 | 2675 | 100 | Plus |
CG7299-RC | 983 | CG7299-RC | 265..389 | 181..314 | 220 | 79.1 | Plus |
CG7299-RA | 643 | CG7299-RA | 265..389 | 181..314 | 220 | 79.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:11:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10683839..10684373 | 550..16 | 2675 | 100 | Minus |
2L | 23513712 | 2L | 10684021..10684115 | 332..238 | 310 | 88.4 | Minus |
2L | 23513712 | 2L | 10684057..10684151 | 368..274 | 310 | 88.4 | Minus |
2L | 23513712 | 2L | 10684021..10684096 | 314..239 | 215 | 85.5 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:11:48 has no hits.
BS11950.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:19 Download gff for
BS11950.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7299-PA | 1..534 | 17..550 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:39:00 Download gff for
BS11950.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7299-RA | 29..573 | 9..554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:27 Download gff for
BS11950.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7299-RA | 29..573 | 9..554 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:27 Download gff for
BS11950.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10683837..10684381 | 9..554 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:39:00 Download gff for
BS11950.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10683837..10684381 | 9..554 | 99 | | Minus |
BS11950.complete Sequence
566 bp assembled on 2006-11-01
GenBank Submission: FJ637031
> BS11950.complete
GAAGTTATCAGTCGACATGAAGGTCTTTGTCGTTCTCGCCGTAATCCTGG
CCGTGTCCAGTGCCGCCCCGCAGTTTAATAATGGCAATGCTAACGCAAAT
GCCAACGCAAATGCTGAGAGTGAGGGCGGTGGAAGACCAGGATTCAGCGG
ACCTGGTTTCCAGAAGGAAGGCGGATTCGGAGGAGGATTCGGGGAACGAG
GCCCTGGATTCGGAGGACAGGGTGGATTCGGAGGGCCAGGACAAGGTGGA
TTCGGAGGACCAGGTGGCTTTGAAGGACAAGGTGGATTCGGCGGACAGGG
TGGATTCGGAGGACAGGGTGGATTCGGAGGACAGGGTGGATTCGGAGGAC
CAGGAGGATTCGGAGGACCAGGAGGACCAGGAGGATTCGGTGGTAACTCC
GAAGCTAACGCCAATGCCAATGCTGTCGCCAACTCTGACGGAGGATTTGG
CGGTGGTAATGCCAATGCAAACGCCAATGCCAATGCCAACACCCGAGGTG
GCAGTGCTAATGCTAACGCCAATGCCGTCGCCAACGCATTCCGCAAATAA
AAGCTTTCTAGACCAT
BS11950.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:20:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7299-RC | 534 | CG7299-PC | 1..534 | 17..550 | 2670 | 100 | Plus |
CG7299-RA | 534 | CG7299-PA | 1..534 | 17..550 | 2670 | 100 | Plus |
CG7299-RC | 534 | CG7299-PC | 222..316 | 274..368 | 310 | 88.4 | Plus |
CG7299-RC | 534 | CG7299-PC | 258..352 | 238..332 | 310 | 88.4 | Plus |
CG7299-RA | 534 | CG7299-PA | 222..316 | 274..368 | 310 | 88.4 | Plus |
CG7299-RA | 534 | CG7299-PA | 258..352 | 238..332 | 310 | 88.4 | Plus |
CG7299-RC | 534 | CG7299-PC | 277..352 | 239..314 | 215 | 85.5 | Plus |
CG7299-RA | 534 | CG7299-PA | 277..352 | 239..314 | 215 | 85.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:20:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7299-RC | 983 | CG7299-RC | 37..571 | 16..550 | 2675 | 100 | Plus |
CG7299-RA | 643 | CG7299-RA | 37..571 | 16..550 | 2675 | 100 | Plus |
CG7299-RC | 983 | CG7299-RC | 295..389 | 238..332 | 310 | 88.4 | Plus |
CG7299-RC | 983 | CG7299-RC | 259..353 | 274..368 | 310 | 88.4 | Plus |
CG7299-RA | 643 | CG7299-RA | 259..353 | 274..368 | 310 | 88.4 | Plus |
CG7299-RA | 643 | CG7299-RA | 295..389 | 238..332 | 310 | 88.4 | Plus |
CG7299-RC | 983 | CG7299-RC | 314..389 | 239..314 | 215 | 85.5 | Plus |
CG7299-RA | 643 | CG7299-RA | 314..389 | 239..314 | 215 | 85.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:20:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10683839..10684373 | 550..16 | 2675 | 100 | Minus |
2L | 23513712 | 2L | 10684021..10684115 | 332..238 | 310 | 88.4 | Minus |
2L | 23513712 | 2L | 10684057..10684151 | 368..274 | 310 | 88.4 | Minus |
2L | 23513712 | 2L | 10684021..10684096 | 314..239 | 215 | 85.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:20:32 has no hits.
BS11950.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:08 Download gff for
BS11950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7299-RA | 1..534 | 17..550 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:21 Download gff for
BS11950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7299-RA | 27..571 | 9..554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:37 Download gff for
BS11950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7299-RA | 38..569 | 17..548 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:08 Download gff for
BS11950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7299-RA | 27..571 | 9..554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:22 Download gff for
BS11950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7299-RA | 38..569 | 17..548 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:22 Download gff for
BS11950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10683841..10684372 | 17..548 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:37 Download gff for
BS11950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10683841..10684372 | 17..548 | 100 | | Minus |
BS11950.pep Sequence
Translation from 16 to 549
> BS11950.pep
MKVFVVLAVILAVSSAAPQFNNGNANANANANAESEGGGRPGFSGPGFQK
EGGFGGGFGERGPGFGGQGGFGGPGQGGFGGPGGFEGQGGFGGQGGFGGQ
GGFGGQGGFGGPGGFGGPGGPGGFGGNSEANANANAVANSDGGFGGGNAN
ANANANANTRGGSANANANAVANAFRK*
BS11950.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7299-PC | 177 | CG7299-PC | 1..177 | 1..177 | 964 | 100 | Plus |
CG7299-PA | 177 | CG7299-PA | 1..177 | 1..177 | 964 | 100 | Plus |
CG7296-PB | 161 | CG7296-PB | 1..158 | 1..161 | 401 | 56 | Plus |
CG7296-PA | 161 | CG7296-PA | 1..158 | 1..161 | 401 | 56 | Plus |
CG8157-PB | 113 | CG8157-PB | 1..100 | 1..125 | 277 | 51.9 | Plus |