Clone Sequence Records
BS11951.3prime Sequence
642 bp (642 high quality bases) assembled on 2006-06-16
> BS11951.3prime
ATGGTCTAGAAAGCTTTCACTTTGAGTTGCCCGCCACGGAACCGGGTCCG
GAACCCGCCAGATCATTCACCCGCTGGTAGCGCGGTTTATTGCGGGTAAA
CGGCAAGTACTTGTACTTGATCATATGCTTGATCTGGCGCTTCATCGTGA
TGCAGAAGAGCGTGATAAAGTACATGACCAGGATGGGCCAGAATACCGGC
ACGTTGAAGAAATCGAAGAATGTACAAATCAGACCGATGAGCGTGCTCTT
CGCCACCGACAGCCAGAACTTGAACTCCGGCAGGCGGCGAATGAATGGCC
GGAACTCTTCGTTGCTGCGAGTTGGCAGATTGGGTCCCTCGTCCTCGTCA
TCCTGCGAATACGGATCGAACTCCGGGTCGATCTTGGGCGTTAAAAAAGC
GATAAACAGGTTCAAGTGGTAAATGCCAAGCGCATAGCACACGATGTACC
AGCCCTGATAGATGAAGATGCGCAGCACAAAGAGCAGGAGCAGAAAGCCG
GCGAACACCCAGCGCATTCGTGTGTGCGGTGTGCTACGGTCCAAGGCGGA
TTGGTAGGTCTGTGAGAGGCGCTGAAAGAACTTCTTAACCCCGCCGCCGC
CGGCAGCACTGCTGTCCTCGTTCATCATGTCGACTGATAACT
BS11951.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11857-PA | 612 | CG11857-RA | 1..612 | 628..17 | 3035 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:24:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11857-RA | 1801 | CG11857-RA | 466..1078 | 629..17 | 3050 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:24:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25259491..25260036 | 562..17 | 2715 | 99.8 | Minus |
| 3R | 32079331 | 3R | 25259363..25259432 | 629..560 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:24:27 has no hits.
BS11951.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:20 Download gff for
BS11951.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11857-PA | 1..612 | 17..628 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:17 Download gff for
BS11951.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11857-RA | 462..1083 | 11..632 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:12:53 Download gff for
BS11951.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11857-RA | 462..1083 | 11..632 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:12:53 Download gff for
BS11951.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25259359..25259432 | 560..632 | 98 | -> | Minus |
| 3R | 25259494..25260041 | 11..559 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:17 Download gff for
BS11951.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21085081..21085154 | 560..632 | 98 | -> | Minus |
| arm_3R | 21085216..21085763 | 11..559 | 99 | | Minus |
BS11951.5prime Sequence
642 bp (642 high quality bases) assembled on 2006-06-16
> BS11951.5prime
GAAGTTATCAGTCGACATGATGAACGAGGACAGCAGTGCTGCCGGCGGCG
GCGGGGTTAAGAAGTTCTTTCAGCGCCTCTCACAGACCTACCAATCCGCC
TTGGACCGTAGCACACCGCACACACGAATGCGCTGGGTGTTCGCCGGCTT
TCTGCTCCTGCTCTTTGTGCTGCGCATCTTCATCTATCAGGGCTGGTACA
TCGTGTGCTATGCGCTTGGCATTTACCACTTGAACCTGTTTATCGCTTTT
TTAACGCCCAAGATCGACCCGGAGTTCGATCCGTATTCGCAGGATGACGA
GGACGAGGGACCCAATCTGCCAACTCGCAGCAACGAAGAGTTCCGGCCAT
TCATTCGCCGCCTGCCGGAGTTCAAGTTCTGGCTGTCGGTGGCGAAGAGC
ACGCTCATCGGTCTGATTTGTACATTCTTCGATTTCTTCAACGTGCCGGT
ATTCTGGCCCATCCTGGTCATGTACTTTATCACGCTCTTCTGCATCACGA
TGAAGCGCCAGATCAAGCATATGATCAAGTACAAGTACTTGCCGTTTACC
CGCAATAAACCGCGCTACCAGCGGGTGAATGATCTGGCGGGTTCCGGACC
CGGTTCCGTGGCGGGCAACTCAAAGTGAAAGCTTTCTAGACC
BS11951.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11857-PA | 612 | CG11857-RA | 1..612 | 17..628 | 3035 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:51:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11857-RA | 1801 | CG11857-RA | 466..1078 | 16..628 | 3050 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:51:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25259491..25260036 | 83..628 | 2715 | 99.8 | Plus |
| 3R | 32079331 | 3R | 25259363..25259432 | 16..85 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:51:32 has no hits.
BS11951.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:20 Download gff for
BS11951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11857-PA | 1..612 | 17..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:07:16 Download gff for
BS11951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11857-RA | 462..1083 | 13..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:39:24 Download gff for
BS11951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11857-RA | 462..1083 | 13..634 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:39:24 Download gff for
BS11951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25259359..25259432 | 13..85 | 98 | -> | Plus |
| 3R | 25259494..25260041 | 86..634 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:07:16 Download gff for
BS11951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21085081..21085154 | 13..85 | 98 | -> | Plus |
| arm_3R | 21085216..21085763 | 86..634 | 99 | | Plus |
BS11951.complete Sequence
644 bp assembled on 2006-11-01
GenBank Submission: FJ637032
> BS11951.complete
GAAGTTATCAGTCGACATGATGAACGAGGACAGCAGTGCTGCCGGCGGCG
GCGGGGTTAAGAAGTTCTTTCAGCGCCTCTCACAGACCTACCAATCCGCC
TTGGACCGTAGCACACCGCACACACGAATGCGCTGGGTGTTCGCCGGCTT
TCTGCTCCTGCTCTTTGTGCTGCGCATCTTCATCTATCAGGGCTGGTACA
TCGTGTGCTATGCGCTTGGCATTTACCACTTGAACCTGTTTATCGCTTTT
TTAACGCCCAAGATCGACCCGGAGTTCGATCCGTATTCGCAGGATGACGA
GGACGAGGGACCCAATCTGCCAACTCGCAGCAACGAAGAGTTCCGGCCAT
TCATTCGCCGCCTGCCGGAGTTCAAGTTCTGGCTGTCGGTGGCGAAGAGC
ACGCTCATCGGTCTGATTTGTACATTCTTCGATTTCTTCAACGTGCCGGT
ATTCTGGCCCATCCTGGTCATGTACTTTATCACGCTCTTCTGCATCACGA
TGAAGCGCCAGATCAAGCATATGATCAAGTACAAGTACTTGCCGTTTACC
CGCAATAAACCGCGCTACCAGCGGGTGAATGATCTGGCGGGTTCCGGACC
CGGTTCCGTGGCGGGCAACTCAAAGTGAAAGCTTTCTAGACCAT
BS11951.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:01:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11857-RA | 612 | CG11857-PA | 1..612 | 17..628 | 3045 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:01:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11857-RA | 1801 | CG11857-RA | 466..1078 | 16..628 | 3050 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:01:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25259491..25260036 | 83..628 | 2715 | 99.8 | Plus |
| 3R | 32079331 | 3R | 25259363..25259432 | 16..85 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:01:14 has no hits.
BS11951.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:09 Download gff for
BS11951.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11857-RA | 1..612 | 17..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:23 Download gff for
BS11951.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11857-RA | 463..1084 | 13..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:52 Download gff for
BS11951.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11857-RA | 467..1077 | 17..627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:10 Download gff for
BS11951.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11857-RA | 463..1084 | 13..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:02 Download gff for
BS11951.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11857-RA | 467..1077 | 17..627 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:02 Download gff for
BS11951.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25259364..25259432 | 17..85 | 100 | -> | Plus |
| 3R | 25259494..25260035 | 86..627 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:52 Download gff for
BS11951.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21085086..21085154 | 17..85 | 100 | -> | Plus |
| arm_3R | 21085216..21085757 | 86..627 | 99 | | Plus |
BS11951.pep Sequence
Translation from 16 to 627
> BS11951.pep
MMNEDSSAAGGGGVKKFFQRLSQTYQSALDRSTPHTRMRWVFAGFLLLLF
VLRIFIYQGWYIVCYALGIYHLNLFIAFLTPKIDPEFDPYSQDDEDEGPN
LPTRSNEEFRPFIRRLPEFKFWLSVAKSTLIGLICTFFDFFNVPVFWPIL
VMYFITLFCITMKRQIKHMIKYKYLPFTRNKPRYQRVNDLAGSGPGSVAG
NSK*
BS11951.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11857-PA | 203 | CG11857-PA | 1..203 | 1..203 | 1092 | 100 | Plus |
