Clone Sequence Records
BS11965.complete Sequence
2747 bp assembled on 2010-05-13
GenBank Submission: KX802553
> BS11965.complete
GAAGTTATCAGTCGACATGAAGCACGAGAAGACCCTAGCCATGGCTGCTC
CGCACAAGCAGCGCCATGCGGACAGCTCCGCCCACGTAGTTCCACGTAGT
CCCATAACCAAGGCCTTTGATTTCCTGCCCTGGACGCGAAGTCGCAGCAA
GGTCAACATGACCAAGGTTCAAAGTCAGCCGGCGGAACAGCAGGCCTCTG
TTTCCACGGTTACCCCTGCAGAGAAATCCTCGGAGGTGCACTATCACAAG
AACATTTTCCGCAGTGGCGGTGGTCTCATCCGTGATATCCTGGTGGGAGA
TAAAAATCTGCAGCTTAAGGATAAGCCACCACAGTCTCCCGTTCCTTCGC
ACAAAAAGAAACAGAAGCACCTGTCGCGCAACAAAAGCTTGGATATTCGA
GAACTTATTGGCTGTGTGGAGCGGGAGATGGCTCCTGCGACGGGAGGAGG
TCCTGTGAGTCAACCGCCACGTTTCATAGATGACACCTACATAGACCACA
AGCCCAAGCACATACTCTTCAATGACGATGAGAATACGGTGTACATTATA
AAGAAGGAGCAGCCCGTGGCCAAGTCCAGTCACAAGGCCAGCAATTCCAC
ATCCAATGCTGCCCAATCGAATGGAGATGTTCTGAAGGCGCGGTTGAAGT
TTAAGAGATTACCCGGCGATCACTATGAAGCATCGCCGGAGGCGCTCCGA
CGGGCACATCTTCTCCACCAGCGATCCGAGCAGCGTCATCAGCTGCAGCG
GCGCAAGAGTCTCAGCGATCAGCAGAGCAGCTCCAGCCTGAGCAGTGGCG
GCGGTGGAGGTGGCAATGCTAATGGCAGCATTATGTTGGAACGCCCCAAA
ACCGATAAGCCGCGCAAGAAGCTTTCGTTCCGGGAACCCATTATTGCCGG
CGACCAAATACTACCACTCATACTCAGCGAACAGCGGCAGGCGAGACAGA
GGCGTCGCAGCTCACCCTTGGAGCGAAGCAGGGTTGGCTTAGCGATAGCG
GACTGTGATAATTTATGCAATAATCGCACAAAGGATGCAATTTCCTGCGG
CTGTGCGACAAGCGATCCGGAGTCTCAGGCGATGCGCATCGTTCGCACCG
TGGGACAAGCCTTTGAAGTGTGCCACAAATTTAATCTTCATAAGAATTCC
CTGGAACCCAATGACGAACGCTCCGATATATCCTCATCGGAGCTGCTGGA
CGTGGAGCAGATCAGCGAGCAGCAGCTATCCGAGGATGGTGAACGCGGTG
GCGGCGACAACGAGACGCCCAAGAAAGAGCACTTGGCCATAACGCCCGAT
CTGAACCACACGCAGCCGCAGCGGCCGAACCACTTGGATATAATGCCATC
GCATTCGAGTCTACGCAAATCGAACAGCCTGCTGTGCGATGTGGACGACA
AGTCGCCAGGCTCACCTTCCTCGCCGCGCTCTGAGATCACTCAGCTGAAG
GACCAGCTGGAGGCACAGGCTCTGCAGACGCGCCAGGCTCTGGGTCAACT
GATGCTGGTGCGGGAGCAGCTCATCTCGGAGACCAATGCGCGCATCGAGG
CACAGGCGCGCACCCAACAATTGCTGCAGCAGAACCGCGAGCTCCTGGAG
CACCTGGCCTCTTTGGGGGCCTACAATGAGCAGCAGACAGCCGGACTCAC
GTCGGCCAACATCGGAATGGCGCCACAGCAATCGCAGCTACAAATGCTGC
TGCAGGCCACGAGCAACAACAACAATCTGGCCACGATCAACCAACAGATC
AGCAATCTTGGCAGCATCAATCAGCAGTTGACCTCGCTGAGTCACCAGCT
GAGTGGCCTGAATCAGCAGAGCCAGCACCTCCAGAATCTGCAGCAGCAGC
AGCAACAACAGCAGCAGCAGCAGCAGCAACAAACGCAGGCGGCACCGACT
GCGGCCACGCCCCCTCCCGCTGCGGGGGGCAGTAGTCCGTATCCGTCGAT
GAGTGCGCTGCAGAGCATCAGCAATCAGCTGCAGCAGCAGCAGCAACAAC
AGCAGCAGGACGCATTGTCCAAGGATCTGTTCCAGGTGAATCAGGAGCTG
TTGAATCGCCTGCAGGCACTGAACTTGAATGCCAATCCTGGCCAGAGCCA
GCCAACGCCCTCGGCCACGGCGCACAACTCCTTCTTCTATGTGAATCCCT
TGTCCTGCACACCGGCCACGCCAAACAACAATGCTGGCGGAGCCGGAGGT
TTCAATTTCCTAACCTCACCGGCAGCCACGGGAACACTGACCCCCTCACC
GTTGGGCACCATGAATCGGAATTCCTTTGCCGGGAGTTCGTCCTTGAACG
AGGATATACGCCTGAGCATCGAGCAGAATCTGAATAATCTGGAGGAGCAA
CTCAAGGCGGCGGTGTCCAATGGCAATCTGGCTGGACTGGCCTGTGGAGG
ATCGACCAGCACGCGGGATACCAGTCGTAGCTCCTCCACCCTGGACTCCC
CATCCTCGCCACGTTTGAGGAGCAGCAATAACAACATTAGTCCTGGAAGC
AGCAATGGCAACCAGAACCACAACAATAATAGCAATAGCAATAGTAGCAG
CAGTCGGGAAACGCGATTCAATACGGTTTTGCTGAGGGTCACCGATGAGG
CGGGTCACCAAAGAAAGCTATCGGCCACGCCCAGTTTCATCACACGCAGC
ACCAGCGAGAAGGTGCCCAATCGCAGCCAGATGATGAGCCAGGTGCAGAG
GACCACCTGGGCCAGGCACACCACCAAATAGAAGCTTTCTAGACCAT
BS11965.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:17:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42673-RC | 2715 | CG42673-PC | 1..2715 | 17..2731 | 13560 | 100 | Plus |
| CG42673-RB | 2097 | CG42673-PB | 437..2097 | 1071..2731 | 8305 | 100 | Plus |
| CG42673-RD | 1317 | CG42673-PD | 437..1049 | 1071..1683 | 3050 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:17:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42673-RC | 3902 | CG32048-RB | 457..3176 | 16..2735 | 13570 | 99.9 | Plus |
| CG42673-RB | 3618 | CG32048-RA | 1228..2892 | 1071..2735 | 8310 | 99.9 | Plus |
| CG42673-RD | 3582 | CG42673-RD | 1228..1840 | 1071..1683 | 3050 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:17:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9592725..9593783 | 1677..2735 | 5280 | 99.9 | Plus |
| 3L | 28110227 | 3L | 9586990..9588046 | 16..1072 | 5270 | 99.9 | Plus |
| 3L | 28110227 | 3L | 9588238..9588444 | 1071..1277 | 1035 | 100 | Plus |
| 3L | 28110227 | 3L | 9592085..9592257 | 1384..1556 | 865 | 100 | Plus |
| 3L | 28110227 | 3L | 9592332..9592456 | 1554..1678 | 625 | 100 | Plus |
| 3L | 28110227 | 3L | 9591239..9591347 | 1276..1384 | 545 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:17:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 636..723 | 2559..2472 | 125 | 64.8 | Minus |
BS11965.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-13 14:01:14 Download gff for
BS11965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32048-RB | 458..3166 | 17..2725 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:38 Download gff for
BS11965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42673-RC | 458..3166 | 17..2725 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:53 Download gff for
BS11965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42673-RC | 458..3166 | 17..2725 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:53 Download gff for
BS11965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9586991..9588046 | 17..1072 | 99 | -> | Plus |
| 3L | 9588240..9588444 | 1073..1277 | 100 | -> | Plus |
| 3L | 9591241..9591347 | 1278..1384 | 100 | -> | Plus |
| 3L | 9592086..9592256 | 1385..1555 | 100 | -> | Plus |
| 3L | 9592334..9592456 | 1556..1678 | 100 | -> | Plus |
| 3L | 9592727..9593773 | 1679..2725 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:38 Download gff for
BS11965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9580091..9581146 | 17..1072 | 99 | -> | Plus |
| arm_3L | 9581340..9581544 | 1073..1277 | 100 | -> | Plus |
| arm_3L | 9584341..9584447 | 1278..1384 | 100 | -> | Plus |
| arm_3L | 9585186..9585356 | 1385..1555 | 100 | -> | Plus |
| arm_3L | 9585434..9585556 | 1556..1678 | 100 | -> | Plus |
| arm_3L | 9585827..9586873 | 1679..2725 | 100 | | Plus |
BS11965.5prime Sequence
1168 bp (896 high quality bases) assembled on 2010-02-21
> BS11965.5prime
ATGAAGCACGAGAAGACCCTAGCCATGGCTGCTCCGCACAAGCAGCGCCA
TGCGGACAGCTCCGCCCACGTAGTTCCACGTAGTCCCATAACCAAGGCCT
TTGATTTCCTGCCCTGGACGCGAAGTCGCAGCAAGGTCAACATGACCAAG
GTTCAAAGTCAGCCGGCGGAACAGCAGGCCTCTGTTTCCACGGTTACCCC
TGCAGAGAAATCCTCGGAGGTGCACTATCACAAGAACATTTTCCGCAGTG
GCGGTGGTCTCATCCGTGATATCCTGGTGGGAGATAAAAATCTGCAGCTT
AAGGATAAGCCACCACAGTCTCCCGTTCCTTCGCACAAAAAGAAACAGAA
GCACCTGTCGCGCAACAAAAGCTTGGATATTCGAGAACTTATTGGCTGTG
TGGAGCGGGAGATGGCTCCTGCGACGGGAGGAGGTCCTGTGAGTCAACCG
CCACGTTTCATAGATGACACCTACATAGACCACAAGCCCAAGCACATACT
CTTCAATGACGATGAGAATACGGTGTACATTATAAAGAAGGAGCAGCCCG
TGGCCAAGTCCAGTCACAAGGCCAGCAATTCCACATCCAATGCTGCCCAA
TCGAATGGAGATGTTCTGAAGGCGCGGTTGAAGTTTAAGAGATTACCCGG
CGATCACTATGAAGCATCGCCGGAGGCGCTCCGACGGGCACATCTTCTCC
ACCAGCGATCCGAGCAGCGTCATCAGCTGCAGCGGCGCAAGAGTCTCAGC
GATCAGCAGAGCAGCTCCAGCCTGAGCAGTGGCGGCGGTGGAGGTGGGCA
TGCTAATGGCAGCATTATGTTGGAACGCCCCAAAACCGATAAGCCGCGCA
AAAAGCTTTCGTTCCGGGAACCCTTATTGCCGGCGAACAAATACTACCAC
TCATACTCAGCGAAACGCGGCAGGGGAAAAAGAAGGCGTCGCAACTCCCC
CTTGGAAGCGAAGCAAGGGTGGGCTTAACGATAGCGGAATGGGGATAATT
TATGGAAAAAATCCCACAAAGGGAAGGAATTTTCCGGGGGGGGGGGGCAA
AAACGAAATCGGGAAACCCCCGGCGAAAGGCCAATCCTTTCCCCCCCGGG
GGGAAAAAACCCTTTTGAAGAGGGGGCCCCAAAATTTTTAATTTTTTAAA
AAAAAATTCTCCCGGGGA
BS11965.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:06:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42673-RC | 3902 | CG32048-RB | 458..1475 | 1..1022 | 4680 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:06:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9586991..9587976 | 1..988 | 4535 | 98.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:06:36 has no hits.
BS11965.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 04:07:20 Download gff for
BS11965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32048-RB | 458..1391 | 1..933 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 08:38:59 Download gff for
BS11965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42673-RC | 458..1391 | 1..933 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:19:58 Download gff for
BS11965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42673-RC | 458..1391 | 1..933 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:19:58 Download gff for
BS11965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9586991..9588018 | 1..1032 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 08:38:59 Download gff for
BS11965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9580091..9581118 | 1..1032 | 97 | <- | Plus |
BS11965.pep Sequence
Translation from 16 to 2730
> BS11965.pep
MKHEKTLAMAAPHKQRHADSSAHVVPRSPITKAFDFLPWTRSRSKVNMTK
VQSQPAEQQASVSTVTPAEKSSEVHYHKNIFRSGGGLIRDILVGDKNLQL
KDKPPQSPVPSHKKKQKHLSRNKSLDIRELIGCVEREMAPATGGGPVSQP
PRFIDDTYIDHKPKHILFNDDENTVYIIKKEQPVAKSSHKASNSTSNAAQ
SNGDVLKARLKFKRLPGDHYEASPEALRRAHLLHQRSEQRHQLQRRKSLS
DQQSSSSLSSGGGGGGNANGSIMLERPKTDKPRKKLSFREPIIAGDQILP
LILSEQRQARQRRRSSPLERSRVGLAIADCDNLCNNRTKDAISCGCATSD
PESQAMRIVRTVGQAFEVCHKFNLHKNSLEPNDERSDISSSELLDVEQIS
EQQLSEDGERGGGDNETPKKEHLAITPDLNHTQPQRPNHLDIMPSHSSLR
KSNSLLCDVDDKSPGSPSSPRSEITQLKDQLEAQALQTRQALGQLMLVRE
QLISETNARIEAQARTQQLLQQNRELLEHLASLGAYNEQQTAGLTSANIG
MAPQQSQLQMLLQATSNNNNLATINQQISNLGSINQQLTSLSHQLSGLNQ
QSQHLQNLQQQQQQQQQQQQQQTQAAPTAATPPPAAGGSSPYPSMSALQS
ISNQLQQQQQQQQQDALSKDLFQVNQELLNRLQALNLNANPGQSQPTPSA
TAHNSFFYVNPLSCTPATPNNNAGGAGGFNFLTSPAATGTLTPSPLGTMN
RNSFAGSSSLNEDIRLSIEQNLNNLEEQLKAAVSNGNLAGLACGGSTSTR
DTSRSSSTLDSPSSPRLRSSNNNISPGSSNGNQNHNNNSNSNSSSSRETR
FNTVLLRVTDEAGHQRKLSATPSFITRSTSEKVPNRSQMMSQVQRTTWAR
HTTK*
BS11965.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:33:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42673-PC | 904 | CG32048-PB | 1..904 | 1..904 | 4612 | 100 | Plus |
| CG42673-PB | 698 | CG32048-PA | 127..698 | 333..904 | 2806 | 97 | Plus |
| CG42673-PD | 438 | CG42673-PD | 127..350 | 333..556 | 1038 | 92 | Plus |
| Pdp1-PC | 570 | CG17888-PC | 17..306 | 586..852 | 188 | 29.6 | Plus |
| Pdp1-PL | 581 | CG17888-PL | 17..306 | 586..852 | 188 | 29.6 | Plus |
