Clone Sequence Records
BS11992.complete Sequence
2618 bp assembled on 2010-07-15
GenBank Submission: KX804543
> BS11992.complete
GAAGTTATCAGTCGACATGAAATCAAAGTACGAAAACATGAAGATCATCT
ACAATCGCAGCAAGATCGGCTGGTACTGGGCTCCGTTGTTCGTATCATGC
TGGTTTCTGCTCTTCTATCTGGTGGTAATACCCAGCTTCCATCGCATGCC
GCAGCTAAAGACGCTCGAGGATGAGCGCCAGCAGCCGGGTCAGTTCATCG
GGGAGCGGGCGGAGAACACCCTTCTGAGGCTTTCCAAGATTGGACCCAAG
GTCGTGGGCAGTGCGGCCAACGAACAGGTGGCTGTTCAGTTTCTTCTCAG
CGAGATAGGTGACATCATCGACGATGCTCGAACGGATCTCTACGATATCG
AGAAGGATGTTCAGGTTGCCTCCGGTAACTATCTTCTCTGGTCCATGGTC
AATGTCTATCAGAGCATTCAGAATGTGGTGGTCAAGCTATCGCCGAAGAA
TGCAACCAGTGAAGCTGCTCTTTTGATCAATTCCCACTTCGATTCGGTGC
CGGGAAGCTCGGGTGCCGGAGACGCCGGAATGATGTGCGTGATTATGTTG
GAAGTTCTCCGGGTTATCACGAAATACGAGACCCCACTAACCTACTCGGT
TGTATTCCTCTTCAACGGAGCCGAGGAGAATCCACTGCAGGGCAGCCATG
CATTCATCACCCAACATCCTTGGGCCCAAAACATTAGAGCGGTCATTAAT
TTGGACTCGGCTGGCAGTGGAGGACGAGAAATTCTATTTCAATCCGGACC
CGATCATCCTTGGCTCATGAAGTACTATGGCAAAAACATAGTTCATCCGT
TTGCCTCCACTATCGGTGAGGAATTGTTCCAAAATGGCTTTGTTCCCTCA
GAGACCGATTATCGCGTGTTCCGTGACTACGGCCATATACCCGGTCTCGA
TATGGCACAGACTTTGAATGGCTATGTATACCATACCAAATATGATCGCT
TTAATCTCATCCCGCGGCGAACTTACCAATTGACTGGTGAAAATATTTTG
GCTCTGGTCAAGGCCCTGGCCAACGCAGAAGAACTGGAGAATCCATCGAA
ATACGCCGAGGGACACATGATATTCTTCGACATGATGGGCTGGTTCTTTG
TCTATTATCCGGAGACCACGGGCATTATCATCAACATTACCGTGTGTGTC
CTGGTCTGCGTCACCATCGTATTGTACATCTGGATGATGTCCAGCAGTAC
GGGCATGTTCCGACGACGAATCTGGGCAAAGTTTGGCATTCTGGCCGCTC
TCCAGTTGGCTGGAGTTGCTCTGGGCATTGGTCTGGTCATATCGATAGCC
CTGTTCCTGGACGCGGTGAATCTACCGATGTCCTGGTTTTCGCAAAACTG
GATGCTCTTCGGCTTGTACTTCTGCCCCATGATTTTTGGTATGGGCATTG
TGCCAGCTATTTACTTTAGTCGCACTAAAGAGCATGGTTTACCCCTGGGC
TATGGCATTCAACTATTGATGCATTCGCATTGCCTGATCTTGACCATTAT
CACCGCCATAATGGTGAGCTATAGTATTCGTTCCGCCTTTGTCATAATGC
TCTGCATCGGCTTCTACACTCTGTCCGTGCTGATCAATTTGGTAACTAAG
GCACACAAAACAAATTTCCTGTGGCTCATACCGCACTGCATTTGCCAGGT
GCTGCCATTCATGTTCTATACTTACTGCTGCTATGCCTTCTATGTGGTTT
TTGTGCCCATGCAGGGACGCGAGTGTAATACAAATCCGGAGATTCTAATG
GGTTTCTTTACGGCGCTAATGGTTCTACTATTTGCACCCTTTCTGGTGCC
CTTGTTCTGTCTGTTCCGCAAGTCCAAGACAATTATCTCAATGTTTGGCA
TCTGCACGATAGTGTTTATCATATTTGCCGCAACACCGATTGCCTTTCCT
TACGCCGAGAAGACGGCGCCCCAAAGATTCTTCGCTGTGCACACAGCAAG
AACCTTCCACAATGGCGATCCAGCGAGCACAGTGAGTCATAAGGACTCGG
GATACTTTGTCCTTCCGGTCGATCGACGTCCTCACACCGTGGATGATATT
CTCTTTGAAAACACAAACTTTACAAAGTCAGAACGTATTGATTGTGACTC
GGAGCTCATGTGCGGATTTCCCATTTACAGCTCACGCTGGTTAAATGCAG
TTGATAACAGCTATTTTGTTCCTGGTCCCGAGCCAAATAGGGAATATATT
CCCACTCTGACTATTTTGGAAAAATCGAGTAATTCAGATACAAATATTAG
GTTTGATCTTGAGATCTCAGGACCGGATCACACGAGCATATTCATTCTGC
CCTTAAACGATAGCAAATTGGTGGATTGGTCCTTCATTAGGGATCCGCTG
GATGGAAATGTAAAGCCACCATACTACGTGTACTGGTCATATGCATTAGA
TCCCAAACCCTTGCAGTTTTCACTGGAATTCGAGCACGAAGATCCAAATT
GGTCGGGAGGCACTTTCAAAATAGCCCTAATGGGTCATCGAATACACGAT
GACATGTATATTACGGAGGATTTCCGTGAGTTCCTGGCCACGTTTCCGCC
GTGGGCGCATGTTAGCTCCTGGCTGGGATCCTACAATAGTTGGCAGCTTT
AAAAGCTTTCTAGACCAT
BS11992.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:32:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9416-RB | 2586 | CG9416-PB | 1..2586 | 17..2602 | 12930 | 100 | Plus |
| CG9416-RA | 2586 | CG9416-PA | 1..2586 | 17..2602 | 12930 | 100 | Plus |
| CG11961-RC | 2676 | CG11961-PC | 419..501 | 342..424 | 235 | 85.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:32:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9416-RB | 2936 | CG9416-RB | 120..2705 | 17..2602 | 12930 | 100 | Plus |
| CG9416-RA | 3076 | CG9416-RA | 260..2845 | 17..2602 | 12930 | 100 | Plus |
| CG11961-RC | 3589 | CG11961-RC | 499..581 | 342..424 | 235 | 85.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:32:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19369944..19370614 | 687..17 | 3355 | 100 | Minus |
| 2R | 25286936 | 2R | 19368955..19369339 | 1432..1048 | 1925 | 100 | Minus |
| 2R | 25286936 | 2R | 19368322..19368647 | 1939..1614 | 1630 | 100 | Minus |
| 2R | 25286936 | 2R | 19367708..19367990 | 2434..2152 | 1415 | 100 | Minus |
| 2R | 25286936 | 2R | 19368048..19368260 | 2151..1939 | 1065 | 100 | Minus |
| 2R | 25286936 | 2R | 19368711..19368893 | 1613..1431 | 915 | 100 | Minus |
| 2R | 25286936 | 2R | 19367479..19367652 | 2602..2429 | 855 | 99.4 | Minus |
| 2R | 25286936 | 2R | 19369404..19369559 | 1048..893 | 780 | 100 | Minus |
| 2R | 25286936 | 2R | 19369614..19369739 | 895..770 | 630 | 100 | Minus |
| 2R | 25286936 | 2R | 19369798..19369886 | 772..684 | 445 | 100 | Minus |
| 2R | 25286936 | 2R | 19359499..19359581 | 342..424 | 235 | 85.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:32:28 has no hits.
BS11992.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 13:47:11 Download gff for
BS11992.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9416-RA | 259..2842 | 17..2600 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:07:49 Download gff for
BS11992.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9416-RA | 260..2843 | 17..2600 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:51:54 Download gff for
BS11992.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9416-RA | 260..2843 | 17..2600 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:51:54 Download gff for
BS11992.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19368048..19368259 | 1940..2151 | 100 | <- | Minus |
| 2R | 19367481..19367646 | 2435..2600 | 100 | <- | Minus |
| 2R | 19367708..19367990 | 2152..2434 | 100 | <- | Minus |
| 2R | 19368322..19368647 | 1614..1939 | 100 | <- | Minus |
| 2R | 19368711..19368891 | 1433..1613 | 100 | <- | Minus |
| 2R | 19368955..19369338 | 1049..1432 | 100 | <- | Minus |
| 2R | 19369404..19369558 | 894..1048 | 100 | <- | Minus |
| 2R | 19369616..19369736 | 773..893 | 100 | <- | Minus |
| 2R | 19369798..19369882 | 688..772 | 100 | <- | Minus |
| 2R | 19369944..19370614 | 17..687 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:07:49 Download gff for
BS11992.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15254986..15255151 | 2435..2600 | 100 | <- | Minus |
| arm_2R | 15256216..15256396 | 1433..1613 | 100 | <- | Minus |
| arm_2R | 15255213..15255495 | 2152..2434 | 100 | <- | Minus |
| arm_2R | 15255553..15255764 | 1940..2151 | 100 | <- | Minus |
| arm_2R | 15255827..15256152 | 1614..1939 | 100 | <- | Minus |
| arm_2R | 15256460..15256843 | 1049..1432 | 100 | <- | Minus |
| arm_2R | 15256909..15257063 | 894..1048 | 100 | <- | Minus |
| arm_2R | 15257121..15257241 | 773..893 | 100 | <- | Minus |
| arm_2R | 15257303..15257387 | 688..772 | 100 | <- | Minus |
| arm_2R | 15257449..15258119 | 17..687 | 100 | | Minus |
BS11992.5prime Sequence
875 bp (666 high quality bases) assembled on 2010-02-21
> BS11992.5prime
ATGAAATCAAAGTACGAAAACATGAAGATCATCTACAATCGCAGCAAGAT
CGGCTGGTACTGGGCTCCGTTGTTCGTATCATGCTGGTTTCTGCTCTTCT
ATCTGGTGGTAATACCCAGCTTCCATCGCATGCCGCAGCTAAAGACGCTC
GAGGATGAGCGCCAGCAGCCGGGTCAGTTCATCGGGGAGCGGGCGGAGAA
CACCCTTCTGAGGCTTTCCAAGATTGGACCCAAGGTCGTGGGCAGTGCGG
CCAACGAACAGGTGGCTGTTCAGTTTCTTCTCAGCGAGATAGGTGACATC
ATCGACGATGCTCGAACGGATCTCTACGATATCGAGAAGGATGTTCAGGT
TGCCTCCGGTAACTATCTTCTCTGGTCCATGGTCAATGTCTATCAGAGCA
TTCAGAATGTGGTGGTCAAGCTATCGCCGAAGAATGCAACCAGTGAAGCT
GCTCTTTTGATCAATTCCCACTTCGATTCGGTGCCGGGAAGCTCGGGTGC
CGGAGACGCCGGAATGATGTGCGTGATTATGTTGGAAGTTCTCCGGGTTA
TCACGAAATACGAGACCCCACTAACCTACTCGGTTGTATTCCTCTTCAAC
GGAACCGAGGAAAATCCACTGCAGGGCAGCCATGCATTCATCACCCAACA
TCCTTTGGGCCCAAAACATTAGAACGGCCATTAATTTGGACTCGGCTGGT
AGTGGAGGACGAAAAATTCAATTTCAATCCGGAACCGATCATCCTGGGCT
CATGAAGTACTATGGCAAAAAACATTATTCATCCGTTTTGCCCTCCCCTA
TCTGGGAAGAAATTGTTCCAAAAATGGCTTTGTTACCCCAAAAAACCAAT
TAATCCGCGAGTTCCCTGACTATCG
BS11992.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:00:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9416-RB | 2936 | CG9416-RB | 120..982 | 1..872 | 3805 | 96.4 | Plus |
| CG9416-RA | 3076 | CG9416-RA | 260..1122 | 1..872 | 3805 | 96.4 | Plus |
| CG11961-RC | 3589 | CG11961-RC | 499..581 | 326..408 | 235 | 85.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:00:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19369944..19370614 | 672..1 | 3280 | 99.6 | Minus |
| 2R | 25286936 | 2R | 19369798..19369886 | 757..669 | 340 | 92.1 | Minus |
| 2R | 25286936 | 2R | 19359499..19359581 | 326..408 | 235 | 85.5 | Plus |
Blast to na_te.dros performed on 2015-02-02 20:00:48 has no hits.
BS11992.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 04:07:30 Download gff for
BS11992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9416-RA | 259..1098 | 1..847 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:22:30 Download gff for
BS11992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9416-RA | 260..1099 | 1..847 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:02:59 Download gff for
BS11992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9416-RA | 260..1099 | 1..847 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:02:59 Download gff for
BS11992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19369798..19369882 | 673..757 | 91 | <- | Minus |
| 2R | 19369944..19370614 | 1..672 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:22:30 Download gff for
BS11992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15257303..15257387 | 673..757 | 91 | <- | Minus |
| arm_2R | 15257449..15258119 | 1..672 | 99 | | Minus |
BS11992.3prime Sequence
811 bp (601 high quality bases) assembled on 2010-02-21
> BS11992.3prime
AGGAGCTAACATGCGCCCACGGCGGAAACGTGGCCAGGAACTCACGGAAA
TCCTCCGTAATATACATGTCATCGTGTATTCGATGACCCATTAGGGCTAT
TTTGAAAGTGCCTCCCGACCAATTTGGATCTTCGTGCTCGAATTCCAGTG
AAAACTGCAAGGGTTTGGGATCTAATGCATATGACCAGTACACGTAGTAT
GGTGGCTTTACATTTCCATCCAGCGGATCCCTAATGAAGGACCAATCCAC
CAATTTGCTATCGTTTAAGGGCAGAATGAATATGCTCGTGTGATCCGGTC
CTGAGATCTCAAGATCAAACCTAATATTTGTATCTGAATTACTCGATTTT
TCCAAAATAGTCAGAGTGGGAATATATTCCCTATTTGGCTCGGGACCAGG
AACAAAATAGCTGTTATCAACTGCATTTAACCAGCGTGAGCTGTAAATGG
GAAAATCCGCACATGAGCTCCGAGTCACAATCAATACGTTCTGACTTTGT
AAAGTTTGTGTTTTCAAAGAGAATATCATCCACGGTGTGAGGACGCCGAT
CCGACCGGAAGGACAAAGTATCCCGAGTCCCTTATGACTCACTGGGCTCG
CTGGATCGCCATTGTGGAAGGTTCTGCTGTGTGCACCAGCGAAAAATCTT
TGGGGCGCCGTCTTTCTCGGCGTAAGGAAAGGCAATCGGTGTTGCGGCAA
AAATGATAAACCCCTAACCGTGCAAATGCCAAAACATTTGAAAATATTGT
CTTGGACATTGCGAAACAAACAAAAAAGGGGCCCAAAAAGGGGGGCAATA
ATAAAACCCTT
BS11992.3prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:03:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9416-RB | 2936 | CG9416-RB | 1874..2673 | 808..1 | 3435 | 95.9 | Minus |
| CG9416-RA | 3076 | CG9416-RA | 2014..2813 | 808..1 | 3435 | 95.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:03:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19367708..19367990 | 137..419 | 1415 | 100 | Plus |
| 2R | 25286936 | 2R | 19368048..19368250 | 420..625 | 850 | 97.6 | Plus |
| 2R | 25286936 | 2R | 19367511..19367652 | 1..142 | 695 | 99.3 | Plus |
| 2R | 25286936 | 2R | 19368324..19368397 | 637..711 | 295 | 96 | Plus |
Blast to na_te.dros performed on 2015-02-12 13:03:08 has no hits.
BS11992.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 04:07:29 Download gff for
BS11992.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9416-RA | 2041..2812 | 1..780 | 96 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 08:41:20 Download gff for
BS11992.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9416-RA | 2042..2813 | 1..780 | 96 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:32:37 Download gff for
BS11992.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9416-RA | 2042..2813 | 1..780 | 96 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:32:37 Download gff for
BS11992.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19367511..19367646 | 1..136 | 100 | <- | Plus |
| 2R | 19367708..19367990 | 137..419 | 100 | <- | Plus |
| 2R | 19368048..19368259 | 420..633 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 08:41:20 Download gff for
BS11992.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15255016..15255151 | 1..136 | 100 | <- | Plus |
| arm_2R | 15255213..15255495 | 137..419 | 100 | <- | Plus |
| arm_2R | 15255553..15255764 | 420..633 | 97 | <- | Plus |
BS11992.pep Sequence
Translation from 16 to 2601
> BS11992.pep
MKSKYENMKIIYNRSKIGWYWAPLFVSCWFLLFYLVVIPSFHRMPQLKTL
EDERQQPGQFIGERAENTLLRLSKIGPKVVGSAANEQVAVQFLLSEIGDI
IDDARTDLYDIEKDVQVASGNYLLWSMVNVYQSIQNVVVKLSPKNATSEA
ALLINSHFDSVPGSSGAGDAGMMCVIMLEVLRVITKYETPLTYSVVFLFN
GAEENPLQGSHAFITQHPWAQNIRAVINLDSAGSGGREILFQSGPDHPWL
MKYYGKNIVHPFASTIGEELFQNGFVPSETDYRVFRDYGHIPGLDMAQTL
NGYVYHTKYDRFNLIPRRTYQLTGENILALVKALANAEELENPSKYAEGH
MIFFDMMGWFFVYYPETTGIIINITVCVLVCVTIVLYIWMMSSSTGMFRR
RIWAKFGILAALQLAGVALGIGLVISIALFLDAVNLPMSWFSQNWMLFGL
YFCPMIFGMGIVPAIYFSRTKEHGLPLGYGIQLLMHSHCLILTIITAIMV
SYSIRSAFVIMLCIGFYTLSVLINLVTKAHKTNFLWLIPHCICQVLPFMF
YTYCCYAFYVVFVPMQGRECNTNPEILMGFFTALMVLLFAPFLVPLFCLF
RKSKTIISMFGICTIVFIIFAATPIAFPYAEKTAPQRFFAVHTARTFHNG
DPASTVSHKDSGYFVLPVDRRPHTVDDILFENTNFTKSERIDCDSELMCG
FPIYSSRWLNAVDNSYFVPGPEPNREYIPTLTILEKSSNSDTNIRFDLEI
SGPDHTSIFILPLNDSKLVDWSFIRDPLDGNVKPPYYVYWSYALDPKPLQ
FSLEFEHEDPNWSGGTFKIALMGHRIHDDMYITEDFREFLATFPPWAHVS
SWLGSYNSWQL*
BS11992.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:37:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9416-PB | 861 | CG9416-PB | 1..861 | 1..861 | 4599 | 100 | Plus |
| CG9416-PA | 861 | CG9416-PA | 1..861 | 1..861 | 4599 | 100 | Plus |
| CG11961-PB | 867 | CG11961-PB | 25..864 | 15..858 | 2211 | 49.3 | Plus |
| CG11961-PC | 891 | CG11961-PC | 49..888 | 15..858 | 2211 | 49.3 | Plus |
| CG11961-PA | 891 | CG11961-PA | 49..888 | 15..858 | 2211 | 49.3 | Plus |
