Clone Sequence Records
BS12002.3prime Sequence
528 bp (528 high quality bases) assembled on 2006-06-16
> BS12002.3prime
ATGGTCTAGAAAGCTTTTATTCCGCGGGGACTTCAATGGAGCCCTCGTTC
AGTTCGTCAATAACATCGTGAGGGTGCTTTCCGTCAACGGTGCAGCCGAC
GCTCTGGGCGGTTCCCAGAACTTCCTTGCAGGTTCCCTTCAACTCACGGG
CCATGGACCTGGGCCTCATCACGCGGGCGATGGCCAGAATGTCTTCGAAG
CCAATGTTTCCACTGTGCTTGATGTTCTTCTGCTTCTTGCGGTCACGTGG
GGGTTCCTTCAGAGCCTTGATGATCAGCGAGGCGGCGGAGGGAACCACGG
AGATGGCGGCCTGTCGGTTCTGGATGGTCAGGCAGACGGTGATCTTCAGA
CCCTTCCAGTCGGAGGTGGCCTTGGCGATGTCATCACCGATTTTCTTGGG
CGACAGACCGAGGGGACCGATCTTTGGGGCCAGGGAGGATGTGGCACCGA
CTTCTCCGCCCACGCAACGCAGGTACACCAATTTAACTTCCGTTGGGTCG
AATTTGGGAGGCATGTCGACTGATAACT
BS12002.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:15:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3195-PA | 498 | RpL12-RA | 1..498 | 514..17 | 2490 | 100 | Minus |
CG3195-PB | 498 | RpL12-RB | 1..498 | 514..17 | 2490 | 100 | Minus |
CG3195-PC | 498 | RpL12-RC | 1..498 | 514..17 | 2490 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:15:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL12-RC | 1095 | CG3195-RC | 93..591 | 514..16 | 2495 | 100 | Minus |
RpL12-RB | 640 | CG3195-RB | 85..583 | 514..16 | 2495 | 100 | Minus |
RpL12-RA | 648 | CG3195-RA | 93..591 | 514..16 | 2495 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:15:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24061150..24061356 | 222..16 | 1035 | 100 | Minus |
2R | 25286936 | 2R | 24060812..24060993 | 404..223 | 910 | 100 | Minus |
2R | 25286936 | 2R | 24060675..24060749 | 478..404 | 375 | 100 | Minus |
2R | 25286936 | 2R | 24060538..24060574 | 514..478 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:15:57 has no hits.
BS12002.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:30 Download gff for
BS12002.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3195-PC | 1..498 | 17..514 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:44:04 Download gff for
BS12002.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL12-RA | 89..604 | 4..518 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:26:38 Download gff for
BS12002.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL12-RA | 89..604 | 4..518 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:26:38 Download gff for
BS12002.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24061150..24061369 | 4..222 | 98 | | Minus |
2R | 24060534..24060574 | 478..518 | 95 | -> | Minus |
2R | 24060676..24060749 | 404..477 | 100 | -> | Minus |
2R | 24060813..24060993 | 223..403 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:44:04 Download gff for
BS12002.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19948057..19948097 | 478..518 | 95 | -> | Minus |
arm_2R | 19948199..19948272 | 404..477 | 100 | -> | Minus |
arm_2R | 19948336..19948516 | 223..403 | 100 | -> | Minus |
arm_2R | 19948673..19948892 | 4..222 | 98 | | Minus |
BS12002.complete Sequence
530 bp assembled on 2009-02-12
> BS12002.complete
GAAGTTATCAGTCGACATGCCTCCCAAATTCGACCCAACGGAAGTTAAAT
TGGTGTACCTGCGTTGCGTGGGCGGAGAAGTCGGTGCCACATCCTCCCTG
GCCCCAAAGATCGGTCCCCTCGGTCTGTCGCCCAAGAAAATCGGTGATGA
CATCGCCAAGGCCACCTCCGACTGGAAGGGTCTGAAGATCACCGTCTGCC
TGACCATCCAGAACCGACAGGCCGCCATCTCCGTGGTTCCCTCCGCCGCC
TCGCTGATCATCAAGGCTCTGAAGGAACCCCCACGTGACCGCAAGAAGCA
GAAGAACATCAAGCACAGTGGAAACATTGGCTTCGAAGACATTCTGGCCA
TCGCCCGCGTGATGAGGCCCAGGTCCATGGCCCGTGAGTTGAAGGGAACC
TGCAAGGAAGTTCTGGGAACCGCCCAGAGCGTCGGCTGCACCGTTGACGG
AAAGCACCCTCACGATGTTATTGACGAACTGAACGAGGGCTCCATTGAAG
TCCCCGCGGAATAAAAGCTTTCTAGACCAT
BS12002.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:18:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL12-RC | 498 | CG3195-PC | 1..498 | 17..514 | 2490 | 100 | Plus |
RpL12-RB | 498 | CG3195-PB | 1..498 | 17..514 | 2490 | 100 | Plus |
RpL12-RA | 498 | CG3195-PA | 1..498 | 17..514 | 2490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL12-RC | 1095 | CG3195-RC | 93..591 | 17..515 | 2495 | 100 | Plus |
RpL12-RB | 640 | CG3195-RB | 85..583 | 17..515 | 2495 | 100 | Plus |
RpL12-RA | 648 | CG3195-RA | 93..591 | 17..515 | 2495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24061150..24061356 | 309..515 | 1035 | 100 | Plus |
2R | 25286936 | 2R | 24060812..24060993 | 127..308 | 910 | 100 | Plus |
2R | 25286936 | 2R | 24060675..24060749 | 53..127 | 375 | 100 | Plus |
2R | 25286936 | 2R | 24060538..24060574 | 17..53 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:18:21 has no hits.
BS12002.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:28 Download gff for
BS12002.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL12-RC | 71..566 | 17..512 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:25 Download gff for
BS12002.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL12-RA | 93..588 | 17..512 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:12 Download gff for
BS12002.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL12-RA | 93..588 | 17..512 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:12 Download gff for
BS12002.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24061150..24061353 | 309..512 | 100 | | Plus |
2R | 24060538..24060574 | 17..53 | 100 | -> | Plus |
2R | 24060676..24060749 | 54..127 | 100 | -> | Plus |
2R | 24060813..24060993 | 128..308 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:25 Download gff for
BS12002.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19948673..19948876 | 309..512 | 100 | | Plus |
arm_2R | 19948199..19948272 | 54..127 | 100 | -> | Plus |
arm_2R | 19948061..19948097 | 17..53 | 100 | -> | Plus |
arm_2R | 19948336..19948516 | 128..308 | 100 | -> | Plus |
BS12002.pep Sequence
Translation from 16 to 513
> BS12002.pep
MPPKFDPTEVKLVYLRCVGGEVGATSSLAPKIGPLGLSPKKIGDDIAKAT
SDWKGLKITVCLTIQNRQAAISVVPSAASLIIKALKEPPRDRKKQKNIKH
SGNIGFEDILAIARVMRPRSMARELKGTCKEVLGTAQSVGCTVDGKHPHD
VIDELNEGSIEVPAE*
BS12002.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:58:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL12-PC | 165 | CG3195-PC | 1..165 | 1..165 | 846 | 100 | Plus |
RpL12-PB | 165 | CG3195-PB | 1..165 | 1..165 | 846 | 100 | Plus |
RpL12-PA | 165 | CG3195-PA | 1..165 | 1..165 | 846 | 100 | Plus |