Clone BS12002 Report

Search the DGRC for BS12002

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:120
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptRpL12-RA
Protein status:BS12002.pep: full length peptide match
Sequenced Size:530

Clone Sequence Records

BS12002.3prime Sequence

528 bp (528 high quality bases) assembled on 2006-06-16

> BS12002.3prime
ATGGTCTAGAAAGCTTTTATTCCGCGGGGACTTCAATGGAGCCCTCGTTC
AGTTCGTCAATAACATCGTGAGGGTGCTTTCCGTCAACGGTGCAGCCGAC
GCTCTGGGCGGTTCCCAGAACTTCCTTGCAGGTTCCCTTCAACTCACGGG
CCATGGACCTGGGCCTCATCACGCGGGCGATGGCCAGAATGTCTTCGAAG
CCAATGTTTCCACTGTGCTTGATGTTCTTCTGCTTCTTGCGGTCACGTGG
GGGTTCCTTCAGAGCCTTGATGATCAGCGAGGCGGCGGAGGGAACCACGG
AGATGGCGGCCTGTCGGTTCTGGATGGTCAGGCAGACGGTGATCTTCAGA
CCCTTCCAGTCGGAGGTGGCCTTGGCGATGTCATCACCGATTTTCTTGGG
CGACAGACCGAGGGGACCGATCTTTGGGGCCAGGGAGGATGTGGCACCGA
CTTCTCCGCCCACGCAACGCAGGTACACCAATTTAACTTCCGTTGGGTCG
AATTTGGGAGGCATGTCGACTGATAACT

BS12002.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:15:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG3195-PA 498 RpL12-RA 1..498 514..17 2490 100 Minus
CG3195-PB 498 RpL12-RB 1..498 514..17 2490 100 Minus
CG3195-PC 498 RpL12-RC 1..498 514..17 2490 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:15:58
Subject Length Description Subject Range Query Range Score Percent Strand
RpL12-RC 1095 CG3195-RC 93..591 514..16 2495 100 Minus
RpL12-RB 640 CG3195-RB 85..583 514..16 2495 100 Minus
RpL12-RA 648 CG3195-RA 93..591 514..16 2495 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:15:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24061150..24061356 222..16 1035 100 Minus
2R 25286936 2R 24060812..24060993 404..223 910 100 Minus
2R 25286936 2R 24060675..24060749 478..404 375 100 Minus
2R 25286936 2R 24060538..24060574 514..478 185 100 Minus
Blast to na_te.dros performed on 2015-02-13 16:15:57 has no hits.

BS12002.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:30 Download gff for BS12002.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3195-PC 1..498 17..514 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:44:04 Download gff for BS12002.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL12-RA 89..604 4..518 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:26:38 Download gff for BS12002.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL12-RA 89..604 4..518 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:26:38 Download gff for BS12002.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24061150..24061369 4..222 98   Minus
2R 24060534..24060574 478..518 95 -> Minus
2R 24060676..24060749 404..477 100 -> Minus
2R 24060813..24060993 223..403 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:44:04 Download gff for BS12002.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19948057..19948097 478..518 95 -> Minus
arm_2R 19948199..19948272 404..477 100 -> Minus
arm_2R 19948336..19948516 223..403 100 -> Minus
arm_2R 19948673..19948892 4..222 98   Minus

BS12002.complete Sequence

530 bp assembled on 2009-02-12

> BS12002.complete
GAAGTTATCAGTCGACATGCCTCCCAAATTCGACCCAACGGAAGTTAAAT
TGGTGTACCTGCGTTGCGTGGGCGGAGAAGTCGGTGCCACATCCTCCCTG
GCCCCAAAGATCGGTCCCCTCGGTCTGTCGCCCAAGAAAATCGGTGATGA
CATCGCCAAGGCCACCTCCGACTGGAAGGGTCTGAAGATCACCGTCTGCC
TGACCATCCAGAACCGACAGGCCGCCATCTCCGTGGTTCCCTCCGCCGCC
TCGCTGATCATCAAGGCTCTGAAGGAACCCCCACGTGACCGCAAGAAGCA
GAAGAACATCAAGCACAGTGGAAACATTGGCTTCGAAGACATTCTGGCCA
TCGCCCGCGTGATGAGGCCCAGGTCCATGGCCCGTGAGTTGAAGGGAACC
TGCAAGGAAGTTCTGGGAACCGCCCAGAGCGTCGGCTGCACCGTTGACGG
AAAGCACCCTCACGATGTTATTGACGAACTGAACGAGGGCTCCATTGAAG
TCCCCGCGGAATAAAAGCTTTCTAGACCAT

BS12002.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:18:22
Subject Length Description Subject Range Query Range Score Percent Strand
RpL12-RC 498 CG3195-PC 1..498 17..514 2490 100 Plus
RpL12-RB 498 CG3195-PB 1..498 17..514 2490 100 Plus
RpL12-RA 498 CG3195-PA 1..498 17..514 2490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:23
Subject Length Description Subject Range Query Range Score Percent Strand
RpL12-RC 1095 CG3195-RC 93..591 17..515 2495 100 Plus
RpL12-RB 640 CG3195-RB 85..583 17..515 2495 100 Plus
RpL12-RA 648 CG3195-RA 93..591 17..515 2495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24061150..24061356 309..515 1035 100 Plus
2R 25286936 2R 24060812..24060993 127..308 910 100 Plus
2R 25286936 2R 24060675..24060749 53..127 375 100 Plus
2R 25286936 2R 24060538..24060574 17..53 185 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:18:21 has no hits.

BS12002.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:28 Download gff for BS12002.complete
Subject Subject Range Query Range Percent Splice Strand
RpL12-RC 71..566 17..512 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:25 Download gff for BS12002.complete
Subject Subject Range Query Range Percent Splice Strand
RpL12-RA 93..588 17..512 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:12 Download gff for BS12002.complete
Subject Subject Range Query Range Percent Splice Strand
RpL12-RA 93..588 17..512 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:12 Download gff for BS12002.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24061150..24061353 309..512 100   Plus
2R 24060538..24060574 17..53 100 -> Plus
2R 24060676..24060749 54..127 100 -> Plus
2R 24060813..24060993 128..308 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:25 Download gff for BS12002.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19948673..19948876 309..512 100   Plus
arm_2R 19948199..19948272 54..127 100 -> Plus
arm_2R 19948061..19948097 17..53 100 -> Plus
arm_2R 19948336..19948516 128..308 100 -> Plus

BS12002.pep Sequence

Translation from 16 to 513

> BS12002.pep
MPPKFDPTEVKLVYLRCVGGEVGATSSLAPKIGPLGLSPKKIGDDIAKAT
SDWKGLKITVCLTIQNRQAAISVVPSAASLIIKALKEPPRDRKKQKNIKH
SGNIGFEDILAIARVMRPRSMARELKGTCKEVLGTAQSVGCTVDGKHPHD
VIDELNEGSIEVPAE*

BS12002.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:58:29
Subject Length Description Subject Range Query Range Score Percent Strand
RpL12-PC 165 CG3195-PC 1..165 1..165 846 100 Plus
RpL12-PB 165 CG3195-PB 1..165 1..165 846 100 Plus
RpL12-PA 165 CG3195-PA 1..165 1..165 846 100 Plus