Clone Sequence Records
BS12016.3prime Sequence
480 bp (480 high quality bases) assembled on 2006-06-16
> BS12016.3prime
ATGGTCTAGAAAGCTTTTAAAAATCCAGTTTTTCCTTGTCGAACTGAATG
TACTTGACCTGTCCGCCCTTGGCGATGATCTTTCCATCGGACTTACGCCT
CAGAATGCAGTCCAAATAGGCCATTTTCTTACCGGCCCGCACGGTATTAC
AATCAATTTCAATAAGTTCGCCAGGTTTCGCTGCTGCAATGTAGCTTACA
TTCAGGTTGGCCGTAACTCCGGGATGGGATCCTTTCGACATAAGGGCATA
TGTGGTACAATTATCAACAATTGTTGCCGTAAGACCACCGTGCAAAGTTC
CTTGGCGATTCAAATGCTCATTGGCCACAGTGAACTCCCCTATTGCGCGA
CCATCTCCACCGCCTGTAATTTTAATCATTTTCAAGACGCGGTCGAATCC
ATTGGACCCGCTGGCGTACTCGGACATCTGCTTCACAAAGTCCATTCCCA
GTTTCTTGGCCGCCATGTCGACTGATAACT
BS12016.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16985-PA | 450 | CG16985-RA | 1..450 | 466..17 | 2250 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:48:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16985-RA | 641 | CG16985-RA | 61..512 | 466..15 | 2260 | 100 | Minus |
CG12182-RC | 3493 | CG12182-RC | 79..145 | 377..443 | 335 | 100 | Plus |
CG12182-RB | 2508 | CG12182-RB | 79..145 | 377..443 | 335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:48:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2599894..2600113 | 234..15 | 1100 | 100 | Minus |
3L | 28110227 | 3L | 2599687..2599833 | 377..231 | 735 | 100 | Minus |
3L | 28110227 | 3L | 2599435..2599501 | 443..377 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:48:23 has no hits.
BS12016.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:33 Download gff for
BS12016.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16985-PA | 1..450 | 17..466 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:29:59 Download gff for
BS12016.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16985-RA | 59..512 | 15..469 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:52:34 Download gff for
BS12016.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16985-RA | 59..512 | 15..469 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:52:34 Download gff for
BS12016.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2599355..2599380 | 443..469 | 96 | -> | Minus |
3L | 2599436..2599501 | 377..442 | 100 | -> | Minus |
3L | 2599688..2599832 | 232..376 | 100 | -> | Minus |
3L | 2599897..2600113 | 15..231 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:29:59 Download gff for
BS12016.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2599688..2599832 | 232..376 | 100 | -> | Minus |
arm_3L | 2599897..2600113 | 15..231 | 100 | | Minus |
arm_3L | 2599355..2599380 | 443..469 | 96 | -> | Minus |
arm_3L | 2599436..2599501 | 377..442 | 100 | -> | Minus |
BS12016.5prime Sequence
480 bp (480 high quality bases) assembled on 2006-06-16
> BS12016.5prime
GAAGTTATCAGTCGACATGGCGGCCAAGAAACTGGGAATGGACTTTGTGA
AGCAGATGTCCGAGTACGCCAGCGGGTCCAATGGATTCGACCGCGTCTTG
AAAATGATTAAAATTACAGGCGGTGGAGATGGTCGCGCAATAGGGGAGTT
CACTGTGGCCAATGAGCATTTGAATCGCCAAGGAACTTTGCACGGTGGTC
TTACGGCAACAATTGTTGATAATTGTACCACATATGCCCTTATGTCGAAA
GGATCCCATCCCGGAGTTACGGCCAACCTGAATGTAAGCTACATTGCAGC
AGCGAAACCTGGCGAACTTATTGAAATTGATTGTAATACCGTGCGGGCCG
GTAAGAAAATGGCCTATTTGGACTGCATTCTGAGGCGTAAGTCCGATGGA
AAGATCATCGCCAAGGGCGGACAGGTCAAGTACATTCAGTTCGACAAGGA
AAAACTGGATTTTTAAAAGCTTTCTAGACC
BS12016.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16985-PA | 450 | CG16985-RA | 1..450 | 17..466 | 2250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:48:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16985-RA | 641 | CG16985-RA | 61..512 | 17..468 | 2260 | 100 | Plus |
CG12182-RC | 3493 | CG12182-RC | 79..145 | 106..40 | 335 | 100 | Minus |
CG12182-RB | 2508 | CG12182-RB | 79..145 | 106..40 | 335 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:48:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2599894..2600113 | 249..468 | 1100 | 100 | Plus |
3L | 28110227 | 3L | 2599687..2599833 | 106..252 | 735 | 100 | Plus |
3L | 28110227 | 3L | 2599435..2599501 | 40..106 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:48:29 has no hits.
BS12016.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:33 Download gff for
BS12016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16985-PA | 1..450 | 17..466 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:02 Download gff for
BS12016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16985-RA | 59..512 | 14..468 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:52:47 Download gff for
BS12016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16985-RA | 59..512 | 14..468 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:52:47 Download gff for
BS12016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2599355..2599380 | 14..40 | 96 | -> | Plus |
3L | 2599436..2599501 | 41..106 | 100 | -> | Plus |
3L | 2599688..2599832 | 107..251 | 100 | -> | Plus |
3L | 2599897..2600113 | 252..468 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:02 Download gff for
BS12016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2599355..2599380 | 14..40 | 96 | -> | Plus |
arm_3L | 2599436..2599501 | 41..106 | 100 | -> | Plus |
arm_3L | 2599688..2599832 | 107..251 | 100 | -> | Plus |
arm_3L | 2599897..2600113 | 252..468 | 100 | | Plus |
BS12016.complete Sequence
482 bp assembled on 2006-11-01
GenBank Submission: FJ637035
> BS12016.complete
GAAGTTATCAGTCGACATGGCGGCCAAGAAACTGGGAATGGACTTTGTGA
AGCAGATGTCCGAGTACGCCAGCGGGTCCAATGGATTCGACCGCGTCTTG
AAAATGATTAAAATTACAGGCGGTGGAGATGGTCGCGCAATAGGGGAGTT
CACTGTGGCCAATGAGCATTTGAATCGCCAAGGAACTTTGCACGGTGGTC
TTACGGCAACAATTGTTGATAATTGTACCACATATGCCCTTATGTCGAAA
GGATCCCATCCCGGAGTTACGGCCAACCTGAATGTAAGCTACATTGCAGC
AGCGAAACCTGGCGAACTTATTGAAATTGATTGTAATACCGTGCGGGCCG
GTAAGAAAATGGCCTATTTGGACTGCATTCTGAGGCGTAAGTCCGATGGA
AAGATCATCGCCAAGGGCGGACAGGTCAAGTACATTCAGTTCGACAAGGA
AAAACTGGATTTTTAAAAGCTTTCTAGACCAT
BS12016.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:28:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16985-RA | 450 | CG16985-PA | 1..450 | 17..466 | 2250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:28:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16985-RA | 641 | CG16985-RA | 61..512 | 17..468 | 2260 | 100 | Plus |
CG12182-RC | 3493 | CG12182-RC | 79..145 | 106..40 | 335 | 100 | Minus |
CG12182-RB | 2508 | CG12182-RB | 79..145 | 106..40 | 335 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:28:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2599894..2600113 | 249..468 | 1100 | 100 | Plus |
3L | 28110227 | 3L | 2599687..2599833 | 106..252 | 735 | 100 | Plus |
3L | 28110227 | 3L | 2599435..2599501 | 40..106 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:28:45 has no hits.
BS12016.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:39 Download gff for
BS12016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16985-RA | 1..450 | 17..466 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:33 Download gff for
BS12016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16985-RA | 54..507 | 14..468 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:01 Download gff for
BS12016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16985-RA | 61..508 | 17..464 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:39 Download gff for
BS12016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16985-RA | 54..507 | 14..468 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:13 Download gff for
BS12016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16985-RA | 61..508 | 17..464 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:13 Download gff for
BS12016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2599897..2600109 | 252..464 | 100 | | Plus |
3L | 2599357..2599380 | 17..40 | 100 | -> | Plus |
3L | 2599436..2599501 | 41..106 | 100 | -> | Plus |
3L | 2599688..2599832 | 107..251 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:01 Download gff for
BS12016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2599897..2600109 | 252..464 | 100 | | Plus |
arm_3L | 2599357..2599380 | 17..40 | 100 | -> | Plus |
arm_3L | 2599436..2599501 | 41..106 | 100 | -> | Plus |
arm_3L | 2599688..2599832 | 107..251 | 100 | -> | Plus |
BS12016.pep Sequence
Translation from 16 to 465
> BS12016.pep
MAAKKLGMDFVKQMSEYASGSNGFDRVLKMIKITGGGDGRAIGEFTVANE
HLNRQGTLHGGLTATIVDNCTTYALMSKGSHPGVTANLNVSYIAAAKPGE
LIEIDCNTVRAGKKMAYLDCILRRKSDGKIIAKGGQVKYIQFDKEKLDF*
BS12016.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:26:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16985-PA | 149 | CG16985-PA | 1..149 | 1..149 | 768 | 100 | Plus |
CG16986-PB | 143 | CG16986-PB | 1..143 | 1..143 | 330 | 44.1 | Plus |
CG16986-PA | 143 | CG16986-PA | 1..143 | 1..143 | 330 | 44.1 | Plus |