Clone BS12016 Report

Search the DGRC for BS12016

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:120
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG16985-RA
Protein status:BS12016.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12016.3prime Sequence

480 bp (480 high quality bases) assembled on 2006-06-16

> BS12016.3prime
ATGGTCTAGAAAGCTTTTAAAAATCCAGTTTTTCCTTGTCGAACTGAATG
TACTTGACCTGTCCGCCCTTGGCGATGATCTTTCCATCGGACTTACGCCT
CAGAATGCAGTCCAAATAGGCCATTTTCTTACCGGCCCGCACGGTATTAC
AATCAATTTCAATAAGTTCGCCAGGTTTCGCTGCTGCAATGTAGCTTACA
TTCAGGTTGGCCGTAACTCCGGGATGGGATCCTTTCGACATAAGGGCATA
TGTGGTACAATTATCAACAATTGTTGCCGTAAGACCACCGTGCAAAGTTC
CTTGGCGATTCAAATGCTCATTGGCCACAGTGAACTCCCCTATTGCGCGA
CCATCTCCACCGCCTGTAATTTTAATCATTTTCAAGACGCGGTCGAATCC
ATTGGACCCGCTGGCGTACTCGGACATCTGCTTCACAAAGTCCATTCCCA
GTTTCTTGGCCGCCATGTCGACTGATAACT

BS12016.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG16985-PA 450 CG16985-RA 1..450 466..17 2250 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:48:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG16985-RA 641 CG16985-RA 61..512 466..15 2260 100 Minus
CG12182-RC 3493 CG12182-RC 79..145 377..443 335 100 Plus
CG12182-RB 2508 CG12182-RB 79..145 377..443 335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:48:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2599894..2600113 234..15 1100 100 Minus
3L 28110227 3L 2599687..2599833 377..231 735 100 Minus
3L 28110227 3L 2599435..2599501 443..377 335 100 Minus
Blast to na_te.dros performed on 2015-02-12 03:48:23 has no hits.

BS12016.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:33 Download gff for BS12016.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16985-PA 1..450 17..466 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:29:59 Download gff for BS12016.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16985-RA 59..512 15..469 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:52:34 Download gff for BS12016.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16985-RA 59..512 15..469 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:52:34 Download gff for BS12016.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 2599355..2599380 443..469 96 -> Minus
3L 2599436..2599501 377..442 100 -> Minus
3L 2599688..2599832 232..376 100 -> Minus
3L 2599897..2600113 15..231 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:29:59 Download gff for BS12016.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2599688..2599832 232..376 100 -> Minus
arm_3L 2599897..2600113 15..231 100   Minus
arm_3L 2599355..2599380 443..469 96 -> Minus
arm_3L 2599436..2599501 377..442 100 -> Minus

BS12016.5prime Sequence

480 bp (480 high quality bases) assembled on 2006-06-16

> BS12016.5prime
GAAGTTATCAGTCGACATGGCGGCCAAGAAACTGGGAATGGACTTTGTGA
AGCAGATGTCCGAGTACGCCAGCGGGTCCAATGGATTCGACCGCGTCTTG
AAAATGATTAAAATTACAGGCGGTGGAGATGGTCGCGCAATAGGGGAGTT
CACTGTGGCCAATGAGCATTTGAATCGCCAAGGAACTTTGCACGGTGGTC
TTACGGCAACAATTGTTGATAATTGTACCACATATGCCCTTATGTCGAAA
GGATCCCATCCCGGAGTTACGGCCAACCTGAATGTAAGCTACATTGCAGC
AGCGAAACCTGGCGAACTTATTGAAATTGATTGTAATACCGTGCGGGCCG
GTAAGAAAATGGCCTATTTGGACTGCATTCTGAGGCGTAAGTCCGATGGA
AAGATCATCGCCAAGGGCGGACAGGTCAAGTACATTCAGTTCGACAAGGA
AAAACTGGATTTTTAAAAGCTTTCTAGACC

BS12016.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG16985-PA 450 CG16985-RA 1..450 17..466 2250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:48:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG16985-RA 641 CG16985-RA 61..512 17..468 2260 100 Plus
CG12182-RC 3493 CG12182-RC 79..145 106..40 335 100 Minus
CG12182-RB 2508 CG12182-RB 79..145 106..40 335 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:48:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2599894..2600113 249..468 1100 100 Plus
3L 28110227 3L 2599687..2599833 106..252 735 100 Plus
3L 28110227 3L 2599435..2599501 40..106 335 100 Plus
Blast to na_te.dros performed on 2015-02-12 03:48:29 has no hits.

BS12016.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:33 Download gff for BS12016.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16985-PA 1..450 17..466 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:02 Download gff for BS12016.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16985-RA 59..512 14..468 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:52:47 Download gff for BS12016.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16985-RA 59..512 14..468 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:52:47 Download gff for BS12016.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 2599355..2599380 14..40 96 -> Plus
3L 2599436..2599501 41..106 100 -> Plus
3L 2599688..2599832 107..251 100 -> Plus
3L 2599897..2600113 252..468 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:02 Download gff for BS12016.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2599355..2599380 14..40 96 -> Plus
arm_3L 2599436..2599501 41..106 100 -> Plus
arm_3L 2599688..2599832 107..251 100 -> Plus
arm_3L 2599897..2600113 252..468 100   Plus

BS12016.complete Sequence

482 bp assembled on 2006-11-01

GenBank Submission: FJ637035

> BS12016.complete
GAAGTTATCAGTCGACATGGCGGCCAAGAAACTGGGAATGGACTTTGTGA
AGCAGATGTCCGAGTACGCCAGCGGGTCCAATGGATTCGACCGCGTCTTG
AAAATGATTAAAATTACAGGCGGTGGAGATGGTCGCGCAATAGGGGAGTT
CACTGTGGCCAATGAGCATTTGAATCGCCAAGGAACTTTGCACGGTGGTC
TTACGGCAACAATTGTTGATAATTGTACCACATATGCCCTTATGTCGAAA
GGATCCCATCCCGGAGTTACGGCCAACCTGAATGTAAGCTACATTGCAGC
AGCGAAACCTGGCGAACTTATTGAAATTGATTGTAATACCGTGCGGGCCG
GTAAGAAAATGGCCTATTTGGACTGCATTCTGAGGCGTAAGTCCGATGGA
AAGATCATCGCCAAGGGCGGACAGGTCAAGTACATTCAGTTCGACAAGGA
AAAACTGGATTTTTAAAAGCTTTCTAGACCAT

BS12016.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:28:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG16985-RA 450 CG16985-PA 1..450 17..466 2250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:28:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG16985-RA 641 CG16985-RA 61..512 17..468 2260 100 Plus
CG12182-RC 3493 CG12182-RC 79..145 106..40 335 100 Minus
CG12182-RB 2508 CG12182-RB 79..145 106..40 335 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2599894..2600113 249..468 1100 100 Plus
3L 28110227 3L 2599687..2599833 106..252 735 100 Plus
3L 28110227 3L 2599435..2599501 40..106 335 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:28:45 has no hits.

BS12016.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:39 Download gff for BS12016.complete
Subject Subject Range Query Range Percent Splice Strand
CG16985-RA 1..450 17..466 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:33 Download gff for BS12016.complete
Subject Subject Range Query Range Percent Splice Strand
CG16985-RA 54..507 14..468 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:01 Download gff for BS12016.complete
Subject Subject Range Query Range Percent Splice Strand
CG16985-RA 61..508 17..464 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:39 Download gff for BS12016.complete
Subject Subject Range Query Range Percent Splice Strand
CG16985-RA 54..507 14..468 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:13 Download gff for BS12016.complete
Subject Subject Range Query Range Percent Splice Strand
CG16985-RA 61..508 17..464 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:13 Download gff for BS12016.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2599897..2600109 252..464 100   Plus
3L 2599357..2599380 17..40 100 -> Plus
3L 2599436..2599501 41..106 100 -> Plus
3L 2599688..2599832 107..251 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:01 Download gff for BS12016.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2599897..2600109 252..464 100   Plus
arm_3L 2599357..2599380 17..40 100 -> Plus
arm_3L 2599436..2599501 41..106 100 -> Plus
arm_3L 2599688..2599832 107..251 100 -> Plus

BS12016.pep Sequence

Translation from 16 to 465

> BS12016.pep
MAAKKLGMDFVKQMSEYASGSNGFDRVLKMIKITGGGDGRAIGEFTVANE
HLNRQGTLHGGLTATIVDNCTTYALMSKGSHPGVTANLNVSYIAAAKPGE
LIEIDCNTVRAGKKMAYLDCILRRKSDGKIIAKGGQVKYIQFDKEKLDF*

BS12016.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:26:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG16985-PA 149 CG16985-PA 1..149 1..149 768 100 Plus
CG16986-PB 143 CG16986-PB 1..143 1..143 330 44.1 Plus
CG16986-PA 143 CG16986-PA 1..143 1..143 330 44.1 Plus