Clone BS12018 Report

Search the DGRC for BS12018

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:120
Well:18
Vector:pDNR-Dual
Associated Gene/Transcriptgk-RB
Protein status:BS12018.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12018.3prime Sequence

651 bp (651 high quality bases) assembled on 2006-06-16

> BS12018.3prime
ATGGTCTAGAAAGCTTCTAGACCCTCACTTTGTAGCTGAGCTTCATCAGC
TTCTTGGAGCTGATCGGGCAATTTGGCCAGAGATTGGCGCACCCCATAGG
TCCGCTGAGATTGTCGCCAGTGTGACGCATGAGTTCGCCCATGTGGGCCG
CAAAATACCATTTGCTCGGCGGCATGTTCATCATCCAGGGCATTGTTGGA
GATCTGATCAGTCTTAGCAGTTCCCGCTCCTTTTCGCTGAGTTGGTAATC
CGCCTTGGAGGCCAGTTCGCAGAGCATCTTGGGGAGACATGATTCCTTGA
TGGCGTCCGTGAGTTGGGACTTGGTCTTCAGACTAGCCCCAGTAACCACT
GCCATTCCAGGCTTGAGGGATTGAGCTGCTGCTGAGAGTTCATTGAAATC
GTGCTCTTCAGTTATGTCGATTTCGGCATTTTTGGTCTGGAACTTGCTGG
CCGCTGCAGCCGCCGGACCCGTTGGGGCACCACCCGGCACCGCGCCCCGC
GCCGATCTTACCGAGTGCGGATTGGGGTGGTTGGACTTCATGCCGCCGCC
GTATCCAAAAAGATCGCCCACAAGGAGCAGCGAGACGATAACGAAGATCA
TGAGGCGACAACGCCAGGCGGTGTCAATGAGAGCCATGTCGACTGATAAC
T

BS12018.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG13695-PB 621 gk-RB 1..621 637..17 3080 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
gk-RB 1318 CG13695-RB 388..1008 637..17 3090 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18139789..18140020 637..406 1160 100 Minus
3L 28110227 3L 18143500..18143703 407..204 1020 100 Minus
3L 28110227 3L 18144919..18145108 206..17 935 99.5 Minus
Blast to na_te.dros performed on 2015-02-12 17:39:24 has no hits.

BS12018.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:34 Download gff for BS12018.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13695-PB 1..621 17..637 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:45 Download gff for BS12018.3prime
Subject Subject Range Query Range Percent Splice Strand
gk-RB 388..1013 12..637 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:43:55 Download gff for BS12018.3prime
Subject Subject Range Query Range Percent Splice Strand
gk-RB 388..1013 12..637 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:43:55 Download gff for BS12018.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 18139789..18140020 406..637 100 -> Minus
3L 18143502..18143703 204..405 100 -> Minus
3L 18144922..18145113 12..203 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:45 Download gff for BS12018.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18136602..18136803 204..405 100 -> Minus
arm_3L 18138022..18138213 12..203 97   Minus
arm_3L 18132889..18133120 406..637 100 -> Minus

BS12018.5prime Sequence

651 bp (615 high quality bases) assembled on 2006-06-16

> BS12018.5prime
GAAGTTATCAGTCGACATGGCTCTCATTGACACCGCCTGGCGTTGTCGCC
TCATGATCTTCGTTATCGTCTCGCTGCTCCTTGTGGGCGATCTTTTTGGA
TACGGCGGCGGCATGAAGTCCAACCACCCCAATCCGCACTCGGTAAGATC
GGCGCGGGGCGCGGTGCCGGGTGGTGCCCCAACGGGTCCGGCGGCTGCAG
CGGCCAGCAAGTTCCAGACCAAAAATGCCGAAATCGACATAACTGAAGAG
CACGATTTCAATGAACTCTCAGCAGCAGCTCAATCCCTCAAGCCTGGAAT
GGCAGTGGTTACTGGGGCTAGTCTGAAGACCAAGTCCCAACTCACGGACG
CCATCAAGGAATCATGTCTCCCCAAGATGCTCTGCGAACTGGCCTCCAAG
GCGGATTACCAACTCAGCGAAAAGGAGCGGGAACTGCTAAGACTGATCAG
ATCTCCAACAATGCCCTGGATGATGAACATGCCGCCGAGCAAATGGTATT
TTGCGGCCCACATGGGCGAACTCATGCGTCACACTGGCGACAATCTCAAC
GGACCTATGGGGTGCGCCAATCTCTGGCCAAATTGCCCGATCAGCTCCAA
GAAGCTGATGAAGCTCACCTACAAAGTGAGGGTCTAGAAGCTTTCTAGAC
C

BS12018.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG13695-PB 621 gk-RB 1..621 17..637 3030 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:02:09
Subject Length Description Subject Range Query Range Score Percent Strand
gk-RB 1318 CG13695-RB 388..1008 17..637 3060 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:02:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18139789..18140020 17..248 1160 100 Plus
3L 28110227 3L 18143500..18143703 247..450 1020 100 Plus
3L 28110227 3L 18144919..18145108 448..637 905 98.4 Plus
Blast to na_te.dros performed on 2015-02-12 11:02:07 has no hits.

BS12018.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:34 Download gff for BS12018.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13695-PB 1..621 17..637 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:09 Download gff for BS12018.5prime
Subject Subject Range Query Range Percent Splice Strand
gk-RB 388..1013 17..642 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:14:09 Download gff for BS12018.5prime
Subject Subject Range Query Range Percent Splice Strand
gk-RB 388..1013 17..642 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:14:09 Download gff for BS12018.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 18139789..18140020 17..248 100 -> Plus
3L 18143502..18143703 249..450 100 -> Plus
3L 18144922..18145113 451..642 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:09 Download gff for BS12018.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18132889..18133120 17..248 100 -> Plus
arm_3L 18136602..18136803 249..450 100 -> Plus
arm_3L 18138022..18138213 451..642 96   Plus

BS12018.complete Sequence

653 bp assembled on 2006-11-01

GenBank Submission: FJ637036

> BS12018.complete
GAAGTTATCAGTCGACATGGCTCTCATTGACACCGCCTGGCGTTGTCGCC
TCATGATCTTCGTTATCGTCTCGCTGCTCCTTGTGGGCGATCTTTTTGGA
TACGGCGGCGGCATGAAGTCCAACCACCCCAATCCGCACTCGGTAAGATC
GGCGCGGGGCGCGGTGCCGGGTGGTGCCCCAACGGGTCCGGCGGCTGCAG
CGGCCAGCAAGTTCCAGACCAAAAATGCCGAAATCGACATAACTGAAGAG
CACGATTTCAATGAACTCTCAGCAGCAGCTCAATCCCTCAAGCCTGGAAT
GGCAGTGGTTACTGGGGCTAGTCTGAAGACCAAGTCCCAACTCACGGACG
CCATCAAGGAATCATGTCTCCCCAAGATGCTCTGCGAACTGGCCTCCAAG
GCGGATTACCAACTCAGCGAAAAGGAGCGGGAACTGCTAAGACTGATCAG
ATCTCCAACAATGCCCTGGATGATGAACATGCCGCCGAGCAAATGGTATT
TTGCGGCCCACATGGGCGAACTCATGCGTCACACTGGCGACAATCTCAGC
GGACCTATGGGGTGCGCCAATCTCTGGCCAAATTGCCCGATCAGCTCCAA
GAAGCTGATGAAGCTCAGCTACAAAGTGAGGGTCTAGAAGCTTTCTAGAC
CAT

BS12018.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
gk-RB 621 CG13695-PB 1..621 17..637 3090 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
gk-RB 1318 CG13695-RB 388..1008 17..637 3090 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18139789..18140020 17..248 1160 100 Plus
3L 28110227 3L 18143500..18143703 247..450 1020 100 Plus
3L 28110227 3L 18144919..18145108 448..637 935 99.5 Plus
Blast to na_te.dros performed on 2014-11-26 21:42:40 has no hits.

BS12018.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:13 Download gff for BS12018.complete
Subject Subject Range Query Range Percent Splice Strand
gk-RB 1..621 17..637 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:28 Download gff for BS12018.complete
Subject Subject Range Query Range Percent Splice Strand
gk-RB 386..1011 17..642 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:34:24 Download gff for BS12018.complete
Subject Subject Range Query Range Percent Splice Strand
gk-RB 388..1008 17..637 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:13 Download gff for BS12018.complete
Subject Subject Range Query Range Percent Splice Strand
gk-RB 386..1011 17..642 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:40:16 Download gff for BS12018.complete
Subject Subject Range Query Range Percent Splice Strand
gk-RB 388..1008 17..637 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:40:16 Download gff for BS12018.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18143502..18143703 249..450 100 -> Plus
3L 18139789..18140020 17..248 100 -> Plus
3L 18144922..18145108 451..637 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:34:24 Download gff for BS12018.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18132889..18133120 17..248 100 -> Plus
arm_3L 18136602..18136803 249..450 100 -> Plus
arm_3L 18138022..18138208 451..637 99   Plus

BS12018.pep Sequence

Translation from 16 to 636

> BS12018.pep
MALIDTAWRCRLMIFVIVSLLLVGDLFGYGGGMKSNHPNPHSVRSARGAV
PGGAPTGPAAAAASKFQTKNAEIDITEEHDFNELSAAAQSLKPGMAVVTG
ASLKTKSQLTDAIKESCLPKMLCELASKADYQLSEKERELLRLIRSPTMP
WMMNMPPSKWYFAAHMGELMRHTGDNLSGPMGCANLWPNCPISSKKLMKL
SYKVRV*

BS12018.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:19
Subject Length Description Subject Range Query Range Score Percent Strand
gk-PB 206 CG13695-PB 1..206 1..206 1081 100 Plus