Clone Sequence Records
BS12018.3prime Sequence
651 bp (651 high quality bases) assembled on 2006-06-16
> BS12018.3prime
ATGGTCTAGAAAGCTTCTAGACCCTCACTTTGTAGCTGAGCTTCATCAGC
TTCTTGGAGCTGATCGGGCAATTTGGCCAGAGATTGGCGCACCCCATAGG
TCCGCTGAGATTGTCGCCAGTGTGACGCATGAGTTCGCCCATGTGGGCCG
CAAAATACCATTTGCTCGGCGGCATGTTCATCATCCAGGGCATTGTTGGA
GATCTGATCAGTCTTAGCAGTTCCCGCTCCTTTTCGCTGAGTTGGTAATC
CGCCTTGGAGGCCAGTTCGCAGAGCATCTTGGGGAGACATGATTCCTTGA
TGGCGTCCGTGAGTTGGGACTTGGTCTTCAGACTAGCCCCAGTAACCACT
GCCATTCCAGGCTTGAGGGATTGAGCTGCTGCTGAGAGTTCATTGAAATC
GTGCTCTTCAGTTATGTCGATTTCGGCATTTTTGGTCTGGAACTTGCTGG
CCGCTGCAGCCGCCGGACCCGTTGGGGCACCACCCGGCACCGCGCCCCGC
GCCGATCTTACCGAGTGCGGATTGGGGTGGTTGGACTTCATGCCGCCGCC
GTATCCAAAAAGATCGCCCACAAGGAGCAGCGAGACGATAACGAAGATCA
TGAGGCGACAACGCCAGGCGGTGTCAATGAGAGCCATGTCGACTGATAAC
T
BS12018.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13695-PB | 621 | gk-RB | 1..621 | 637..17 | 3080 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:39:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gk-RB | 1318 | CG13695-RB | 388..1008 | 637..17 | 3090 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:39:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18139789..18140020 | 637..406 | 1160 | 100 | Minus |
3L | 28110227 | 3L | 18143500..18143703 | 407..204 | 1020 | 100 | Minus |
3L | 28110227 | 3L | 18144919..18145108 | 206..17 | 935 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:39:24 has no hits.
BS12018.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:34 Download gff for
BS12018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13695-PB | 1..621 | 17..637 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:45 Download gff for
BS12018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gk-RB | 388..1013 | 12..637 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:43:55 Download gff for
BS12018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gk-RB | 388..1013 | 12..637 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:43:55 Download gff for
BS12018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18139789..18140020 | 406..637 | 100 | -> | Minus |
3L | 18143502..18143703 | 204..405 | 100 | -> | Minus |
3L | 18144922..18145113 | 12..203 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:45 Download gff for
BS12018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18136602..18136803 | 204..405 | 100 | -> | Minus |
arm_3L | 18138022..18138213 | 12..203 | 97 | | Minus |
arm_3L | 18132889..18133120 | 406..637 | 100 | -> | Minus |
BS12018.5prime Sequence
651 bp (615 high quality bases) assembled on 2006-06-16
> BS12018.5prime
GAAGTTATCAGTCGACATGGCTCTCATTGACACCGCCTGGCGTTGTCGCC
TCATGATCTTCGTTATCGTCTCGCTGCTCCTTGTGGGCGATCTTTTTGGA
TACGGCGGCGGCATGAAGTCCAACCACCCCAATCCGCACTCGGTAAGATC
GGCGCGGGGCGCGGTGCCGGGTGGTGCCCCAACGGGTCCGGCGGCTGCAG
CGGCCAGCAAGTTCCAGACCAAAAATGCCGAAATCGACATAACTGAAGAG
CACGATTTCAATGAACTCTCAGCAGCAGCTCAATCCCTCAAGCCTGGAAT
GGCAGTGGTTACTGGGGCTAGTCTGAAGACCAAGTCCCAACTCACGGACG
CCATCAAGGAATCATGTCTCCCCAAGATGCTCTGCGAACTGGCCTCCAAG
GCGGATTACCAACTCAGCGAAAAGGAGCGGGAACTGCTAAGACTGATCAG
ATCTCCAACAATGCCCTGGATGATGAACATGCCGCCGAGCAAATGGTATT
TTGCGGCCCACATGGGCGAACTCATGCGTCACACTGGCGACAATCTCAAC
GGACCTATGGGGTGCGCCAATCTCTGGCCAAATTGCCCGATCAGCTCCAA
GAAGCTGATGAAGCTCACCTACAAAGTGAGGGTCTAGAAGCTTTCTAGAC
C
BS12018.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13695-PB | 621 | gk-RB | 1..621 | 17..637 | 3030 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:02:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gk-RB | 1318 | CG13695-RB | 388..1008 | 17..637 | 3060 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:02:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18139789..18140020 | 17..248 | 1160 | 100 | Plus |
3L | 28110227 | 3L | 18143500..18143703 | 247..450 | 1020 | 100 | Plus |
3L | 28110227 | 3L | 18144919..18145108 | 448..637 | 905 | 98.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:02:07 has no hits.
BS12018.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:34 Download gff for
BS12018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13695-PB | 1..621 | 17..637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:09 Download gff for
BS12018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gk-RB | 388..1013 | 17..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:14:09 Download gff for
BS12018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gk-RB | 388..1013 | 17..642 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:14:09 Download gff for
BS12018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18139789..18140020 | 17..248 | 100 | -> | Plus |
3L | 18143502..18143703 | 249..450 | 100 | -> | Plus |
3L | 18144922..18145113 | 451..642 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:09 Download gff for
BS12018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18132889..18133120 | 17..248 | 100 | -> | Plus |
arm_3L | 18136602..18136803 | 249..450 | 100 | -> | Plus |
arm_3L | 18138022..18138213 | 451..642 | 96 | | Plus |
BS12018.complete Sequence
653 bp assembled on 2006-11-01
GenBank Submission: FJ637036
> BS12018.complete
GAAGTTATCAGTCGACATGGCTCTCATTGACACCGCCTGGCGTTGTCGCC
TCATGATCTTCGTTATCGTCTCGCTGCTCCTTGTGGGCGATCTTTTTGGA
TACGGCGGCGGCATGAAGTCCAACCACCCCAATCCGCACTCGGTAAGATC
GGCGCGGGGCGCGGTGCCGGGTGGTGCCCCAACGGGTCCGGCGGCTGCAG
CGGCCAGCAAGTTCCAGACCAAAAATGCCGAAATCGACATAACTGAAGAG
CACGATTTCAATGAACTCTCAGCAGCAGCTCAATCCCTCAAGCCTGGAAT
GGCAGTGGTTACTGGGGCTAGTCTGAAGACCAAGTCCCAACTCACGGACG
CCATCAAGGAATCATGTCTCCCCAAGATGCTCTGCGAACTGGCCTCCAAG
GCGGATTACCAACTCAGCGAAAAGGAGCGGGAACTGCTAAGACTGATCAG
ATCTCCAACAATGCCCTGGATGATGAACATGCCGCCGAGCAAATGGTATT
TTGCGGCCCACATGGGCGAACTCATGCGTCACACTGGCGACAATCTCAGC
GGACCTATGGGGTGCGCCAATCTCTGGCCAAATTGCCCGATCAGCTCCAA
GAAGCTGATGAAGCTCAGCTACAAAGTGAGGGTCTAGAAGCTTTCTAGAC
CAT
BS12018.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:42:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gk-RB | 621 | CG13695-PB | 1..621 | 17..637 | 3090 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:42:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gk-RB | 1318 | CG13695-RB | 388..1008 | 17..637 | 3090 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:42:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18139789..18140020 | 17..248 | 1160 | 100 | Plus |
3L | 28110227 | 3L | 18143500..18143703 | 247..450 | 1020 | 100 | Plus |
3L | 28110227 | 3L | 18144919..18145108 | 448..637 | 935 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:42:40 has no hits.
BS12018.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:13 Download gff for
BS12018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gk-RB | 1..621 | 17..637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:28 Download gff for
BS12018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gk-RB | 386..1011 | 17..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:34:24 Download gff for
BS12018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gk-RB | 388..1008 | 17..637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:13 Download gff for
BS12018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gk-RB | 386..1011 | 17..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:40:16 Download gff for
BS12018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gk-RB | 388..1008 | 17..637 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:40:16 Download gff for
BS12018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18143502..18143703 | 249..450 | 100 | -> | Plus |
3L | 18139789..18140020 | 17..248 | 100 | -> | Plus |
3L | 18144922..18145108 | 451..637 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:34:24 Download gff for
BS12018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18132889..18133120 | 17..248 | 100 | -> | Plus |
arm_3L | 18136602..18136803 | 249..450 | 100 | -> | Plus |
arm_3L | 18138022..18138208 | 451..637 | 99 | | Plus |
BS12018.pep Sequence
Translation from 16 to 636
> BS12018.pep
MALIDTAWRCRLMIFVIVSLLLVGDLFGYGGGMKSNHPNPHSVRSARGAV
PGGAPTGPAAAAASKFQTKNAEIDITEEHDFNELSAAAQSLKPGMAVVTG
ASLKTKSQLTDAIKESCLPKMLCELASKADYQLSEKERELLRLIRSPTMP
WMMNMPPSKWYFAAHMGELMRHTGDNLSGPMGCANLWPNCPISSKKLMKL
SYKVRV*
BS12018.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gk-PB | 206 | CG13695-PB | 1..206 | 1..206 | 1081 | 100 | Plus |