Clone BS12024 Report

Search the DGRC for BS12024

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:120
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptRpL24-RA
Protein status:BS12024.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12024.3prime Sequence

498 bp (498 high quality bases) assembled on 2006-06-16

> BS12024.3prime
ATGGTCTAGAAAGCTTTTACCGCTTGCCTCCGACGCGGGGAGCAGCCTTC
TGCGTGACCTTGGCGGCCTTCTGCTTGGGCGCCGACTTCTTAGCGGGAGC
GGGGGCAGCAGCCTTCTTGGCGGCCTTGACGGCACGCTTCTGCTCCTTGG
CCACCTTGATGGCCTGGTCGCGCTGCGCCTTGCGCACCTCGGGCTTCATG
TTACGCTTGGCCAGAATCTCGGCCAGCGAGGCACCGACGATGGCGCGCTG
GAACTTCTGGGTGCGGCGGGTGCGCTTCTTGGAGGCCTCCTCCTCGATTC
CCTTGCGGTGCTTCCGGCGGTACAGCACGGTCCACGTAACCTTGCGGGGA
TTGCGCTTCATCAGGTAGGAGCGCTCGCACTTCTTGTCCAGGAAGGTGAA
CGACTTGCCATCGATCTTGACCATGGTCTTGCCATGACCGGGGTAGATTT
TGTACCCGCTGAATGCGCACAAGCCAATTTTCATGTCGACTGATAACT

BS12024.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG9282-PA 468 RpL24-RA 1..468 484..17 2340 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:32:37
Subject Length Description Subject Range Query Range Score Percent Strand
RpL24-RC 829 CG9282-RC 72..540 484..16 2345 100 Minus
RpL24-RB 1226 CG9282-RB 33..501 484..16 2345 100 Minus
RpL24-RA 790 CG9282-RA 33..501 484..16 2345 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13394412..13394801 16..405 1950 100 Plus
2L 23513712 2L 13394865..13394940 404..479 380 100 Plus
Blast to na_te.dros performed on 2015-02-03 06:32:33 has no hits.

BS12024.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:35 Download gff for BS12024.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9282-PA 1..468 17..484 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:43 Download gff for BS12024.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL24-RA 26..512 3..492 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:19 Download gff for BS12024.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL24-RA 26..512 3..492 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:19 Download gff for BS12024.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13394401..13394799 3..403 98 <- Plus
2L 13394865..13394944 404..486 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:43 Download gff for BS12024.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13394401..13394799 3..403 98 <- Plus
arm_2L 13394865..13394944 404..486 96   Plus

BS12024.5prime Sequence

498 bp (498 high quality bases) assembled on 2006-06-16

> BS12024.5prime
GAAGTTATCAGTCGACATGAAAATTGGCTTGTGCGCATTCAGCGGGTACA
AAATCTACCCCGGTCATGGCAAGACCATGGTCAAGATCGATGGCAAGTCG
TTCACCTTCCTGGACAAGAAGTGCGAGCGCTCCTACCTGATGAAGCGCAA
TCCCCGCAAGGTTACGTGGACCGTGCTGTACCGCCGGAAGCACCGCAAGG
GAATCGAGGAGGAGGCCTCCAAGAAGCGCACCCGCCGCACCCAGAAGTTC
CAGCGCGCCATCGTCGGTGCCTCGCTGGCCGAGATTCTGGCCAAGCGTAA
CATGAAGCCCGAGGTGCGCAAGGCGCAGCGCGACCAGGCCATCAAGGTGG
CCAAGGAGCAGAAGCGTGCCGTCAAGGCCGCCAAGAAGGCTGCTGCCCCC
GCTCCCGCTAAGAAGTCGGCGCCCAAGCAGAAGGCCGCCAAGGTCACGCA
GAAGGCTGCTCCCCGCGTCGGAGGCAAGCGGTAAAAGCTTTCTAGACC

BS12024.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG9282-PA 468 RpL24-RA 1..468 17..484 2340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:02:31
Subject Length Description Subject Range Query Range Score Percent Strand
RpL24-RC 829 CG9282-RC 72..540 17..485 2345 100 Plus
RpL24-RB 1226 CG9282-RB 33..501 17..485 2345 100 Plus
RpL24-RA 790 CG9282-RA 33..501 17..485 2345 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:02:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13394412..13394801 485..96 1950 100 Minus
2L 23513712 2L 13394865..13394940 97..22 380 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:02:28 has no hits.

BS12024.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:35 Download gff for BS12024.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9282-PA 1..468 17..484 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:15 Download gff for BS12024.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL24-RA 26..512 9..498 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:14:52 Download gff for BS12024.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL24-RA 26..512 9..498 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:14:52 Download gff for BS12024.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13394401..13394799 98..498 98 <- Minus
2L 13394865..13394944 15..97 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:15 Download gff for BS12024.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13394401..13394799 98..498 98 <- Minus
arm_2L 13394865..13394944 15..97 96   Minus

BS12024.complete Sequence

500 bp assembled on 2006-11-01

GenBank Submission: FJ637038

> BS12024.complete
GAAGTTATCAGTCGACATGAAAATTGGCTTGTGCGCATTCAGCGGGTACA
AAATCTACCCCGGTCATGGCAAGACCATGGTCAAGATCGATGGCAAGTCG
TTCACCTTCCTGGACAAGAAGTGCGAGCGCTCCTACCTGATGAAGCGCAA
TCCCCGCAAGGTTACGTGGACCGTGCTGTACCGCCGGAAGCACCGCAAGG
GAATCGAGGAGGAGGCCTCCAAGAAGCGCACCCGCCGCACCCAGAAGTTC
CAGCGCGCCATCGTCGGTGCCTCGCTGGCCGAGATTCTGGCCAAGCGTAA
CATGAAGCCCGAGGTGCGCAAGGCGCAGCGCGACCAGGCCATCAAGGTGG
CCAAGGAGCAGAAGCGTGCCGTCAAGGCCGCCAAGAAGGCTGCTGCCCCC
GCTCCCGCTAAGAAGTCGGCGCCCAAGCAGAAGGCCGCCAAGGTCACGCA
GAAGGCTGCTCCCCGCGTCGGAGGCAAGCGGTAAAAGCTTTCTAGACCAT

BS12024.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
RpL24-RC 468 CG9282-PC 1..468 17..484 2340 100 Plus
RpL24-RB 468 CG9282-PB 1..468 17..484 2340 100 Plus
RpL24-RA 468 CG9282-PA 1..468 17..484 2340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:25:53
Subject Length Description Subject Range Query Range Score Percent Strand
RpL24-RC 829 CG9282-RC 72..540 17..485 2345 100 Plus
RpL24-RB 1226 CG9282-RB 33..501 17..485 2345 100 Plus
RpL24-RA 790 CG9282-RA 33..501 17..485 2345 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:25:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13394412..13394801 485..96 1950 100 Minus
2L 23513712 2L 13394865..13394940 97..22 380 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:25:51 has no hits.

BS12024.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:16 Download gff for BS12024.complete
Subject Subject Range Query Range Percent Splice Strand
RpL24-RA 1..468 17..484 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:30 Download gff for BS12024.complete
Subject Subject Range Query Range Percent Splice Strand
RpL24-RA 49..535 9..498 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:44 Download gff for BS12024.complete
Subject Subject Range Query Range Percent Splice Strand
RpL24-RA 33..498 17..482 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:16 Download gff for BS12024.complete
Subject Subject Range Query Range Percent Splice Strand
RpL24-RA 49..535 9..498 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:18 Download gff for BS12024.complete
Subject Subject Range Query Range Percent Splice Strand
RpL24-RA 33..498 17..482 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:18 Download gff for BS12024.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13394415..13394799 98..482 100 <- Minus
2L 13394865..13394942 17..97 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:44 Download gff for BS12024.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13394415..13394799 98..482 100 <- Minus
arm_2L 13394865..13394942 17..97 96   Minus

BS12024.pep Sequence

Translation from 16 to 483

> BS12024.pep
MKIGLCAFSGYKIYPGHGKTMVKIDGKSFTFLDKKCERSYLMKRNPRKVT
WTVLYRRKHRKGIEEEASKKRTRRTQKFQRAIVGASLAEILAKRNMKPEV
RKAQRDQAIKVAKEQKRAVKAAKKAAAPAPAKKSAPKQKAAKVTQKAAPR
VGGKR*

BS12024.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:14
Subject Length Description Subject Range Query Range Score Percent Strand
RpL24-PC 155 CG9282-PC 1..155 1..155 785 100 Plus
RpL24-PB 155 CG9282-PB 1..155 1..155 785 100 Plus
RpL24-PA 155 CG9282-PA 1..155 1..155 785 100 Plus
RpL24-like-PA 191 CG6764-PA 1..151 1..142 172 30.5 Plus