Clone Sequence Records
BS12024.3prime Sequence
498 bp (498 high quality bases) assembled on 2006-06-16
> BS12024.3prime
ATGGTCTAGAAAGCTTTTACCGCTTGCCTCCGACGCGGGGAGCAGCCTTC
TGCGTGACCTTGGCGGCCTTCTGCTTGGGCGCCGACTTCTTAGCGGGAGC
GGGGGCAGCAGCCTTCTTGGCGGCCTTGACGGCACGCTTCTGCTCCTTGG
CCACCTTGATGGCCTGGTCGCGCTGCGCCTTGCGCACCTCGGGCTTCATG
TTACGCTTGGCCAGAATCTCGGCCAGCGAGGCACCGACGATGGCGCGCTG
GAACTTCTGGGTGCGGCGGGTGCGCTTCTTGGAGGCCTCCTCCTCGATTC
CCTTGCGGTGCTTCCGGCGGTACAGCACGGTCCACGTAACCTTGCGGGGA
TTGCGCTTCATCAGGTAGGAGCGCTCGCACTTCTTGTCCAGGAAGGTGAA
CGACTTGCCATCGATCTTGACCATGGTCTTGCCATGACCGGGGTAGATTT
TGTACCCGCTGAATGCGCACAAGCCAATTTTCATGTCGACTGATAACT
BS12024.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9282-PA | 468 | RpL24-RA | 1..468 | 484..17 | 2340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:32:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL24-RC | 829 | CG9282-RC | 72..540 | 484..16 | 2345 | 100 | Minus |
RpL24-RB | 1226 | CG9282-RB | 33..501 | 484..16 | 2345 | 100 | Minus |
RpL24-RA | 790 | CG9282-RA | 33..501 | 484..16 | 2345 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:32:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13394412..13394801 | 16..405 | 1950 | 100 | Plus |
2L | 23513712 | 2L | 13394865..13394940 | 404..479 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:32:33 has no hits.
BS12024.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:35 Download gff for
BS12024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9282-PA | 1..468 | 17..484 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:43 Download gff for
BS12024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL24-RA | 26..512 | 3..492 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:19 Download gff for
BS12024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL24-RA | 26..512 | 3..492 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:19 Download gff for
BS12024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13394401..13394799 | 3..403 | 98 | <- | Plus |
2L | 13394865..13394944 | 404..486 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:43 Download gff for
BS12024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13394401..13394799 | 3..403 | 98 | <- | Plus |
arm_2L | 13394865..13394944 | 404..486 | 96 | | Plus |
BS12024.5prime Sequence
498 bp (498 high quality bases) assembled on 2006-06-16
> BS12024.5prime
GAAGTTATCAGTCGACATGAAAATTGGCTTGTGCGCATTCAGCGGGTACA
AAATCTACCCCGGTCATGGCAAGACCATGGTCAAGATCGATGGCAAGTCG
TTCACCTTCCTGGACAAGAAGTGCGAGCGCTCCTACCTGATGAAGCGCAA
TCCCCGCAAGGTTACGTGGACCGTGCTGTACCGCCGGAAGCACCGCAAGG
GAATCGAGGAGGAGGCCTCCAAGAAGCGCACCCGCCGCACCCAGAAGTTC
CAGCGCGCCATCGTCGGTGCCTCGCTGGCCGAGATTCTGGCCAAGCGTAA
CATGAAGCCCGAGGTGCGCAAGGCGCAGCGCGACCAGGCCATCAAGGTGG
CCAAGGAGCAGAAGCGTGCCGTCAAGGCCGCCAAGAAGGCTGCTGCCCCC
GCTCCCGCTAAGAAGTCGGCGCCCAAGCAGAAGGCCGCCAAGGTCACGCA
GAAGGCTGCTCCCCGCGTCGGAGGCAAGCGGTAAAAGCTTTCTAGACC
BS12024.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9282-PA | 468 | RpL24-RA | 1..468 | 17..484 | 2340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:02:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL24-RC | 829 | CG9282-RC | 72..540 | 17..485 | 2345 | 100 | Plus |
RpL24-RB | 1226 | CG9282-RB | 33..501 | 17..485 | 2345 | 100 | Plus |
RpL24-RA | 790 | CG9282-RA | 33..501 | 17..485 | 2345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:02:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13394412..13394801 | 485..96 | 1950 | 100 | Minus |
2L | 23513712 | 2L | 13394865..13394940 | 97..22 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:02:28 has no hits.
BS12024.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:35 Download gff for
BS12024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9282-PA | 1..468 | 17..484 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:15 Download gff for
BS12024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL24-RA | 26..512 | 9..498 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:14:52 Download gff for
BS12024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL24-RA | 26..512 | 9..498 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:14:52 Download gff for
BS12024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13394401..13394799 | 98..498 | 98 | <- | Minus |
2L | 13394865..13394944 | 15..97 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:15 Download gff for
BS12024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13394401..13394799 | 98..498 | 98 | <- | Minus |
arm_2L | 13394865..13394944 | 15..97 | 96 | | Minus |
BS12024.complete Sequence
500 bp assembled on 2006-11-01
GenBank Submission: FJ637038
> BS12024.complete
GAAGTTATCAGTCGACATGAAAATTGGCTTGTGCGCATTCAGCGGGTACA
AAATCTACCCCGGTCATGGCAAGACCATGGTCAAGATCGATGGCAAGTCG
TTCACCTTCCTGGACAAGAAGTGCGAGCGCTCCTACCTGATGAAGCGCAA
TCCCCGCAAGGTTACGTGGACCGTGCTGTACCGCCGGAAGCACCGCAAGG
GAATCGAGGAGGAGGCCTCCAAGAAGCGCACCCGCCGCACCCAGAAGTTC
CAGCGCGCCATCGTCGGTGCCTCGCTGGCCGAGATTCTGGCCAAGCGTAA
CATGAAGCCCGAGGTGCGCAAGGCGCAGCGCGACCAGGCCATCAAGGTGG
CCAAGGAGCAGAAGCGTGCCGTCAAGGCCGCCAAGAAGGCTGCTGCCCCC
GCTCCCGCTAAGAAGTCGGCGCCCAAGCAGAAGGCCGCCAAGGTCACGCA
GAAGGCTGCTCCCCGCGTCGGAGGCAAGCGGTAAAAGCTTTCTAGACCAT
BS12024.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:25:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL24-RC | 468 | CG9282-PC | 1..468 | 17..484 | 2340 | 100 | Plus |
RpL24-RB | 468 | CG9282-PB | 1..468 | 17..484 | 2340 | 100 | Plus |
RpL24-RA | 468 | CG9282-PA | 1..468 | 17..484 | 2340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:25:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL24-RC | 829 | CG9282-RC | 72..540 | 17..485 | 2345 | 100 | Plus |
RpL24-RB | 1226 | CG9282-RB | 33..501 | 17..485 | 2345 | 100 | Plus |
RpL24-RA | 790 | CG9282-RA | 33..501 | 17..485 | 2345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:25:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13394412..13394801 | 485..96 | 1950 | 100 | Minus |
2L | 23513712 | 2L | 13394865..13394940 | 97..22 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:25:51 has no hits.
BS12024.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:16 Download gff for
BS12024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL24-RA | 1..468 | 17..484 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:30 Download gff for
BS12024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL24-RA | 49..535 | 9..498 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:44 Download gff for
BS12024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL24-RA | 33..498 | 17..482 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:16 Download gff for
BS12024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL24-RA | 49..535 | 9..498 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:18 Download gff for
BS12024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL24-RA | 33..498 | 17..482 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:18 Download gff for
BS12024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13394415..13394799 | 98..482 | 100 | <- | Minus |
2L | 13394865..13394942 | 17..97 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:44 Download gff for
BS12024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13394415..13394799 | 98..482 | 100 | <- | Minus |
arm_2L | 13394865..13394942 | 17..97 | 96 | | Minus |
BS12024.pep Sequence
Translation from 16 to 483
> BS12024.pep
MKIGLCAFSGYKIYPGHGKTMVKIDGKSFTFLDKKCERSYLMKRNPRKVT
WTVLYRRKHRKGIEEEASKKRTRRTQKFQRAIVGASLAEILAKRNMKPEV
RKAQRDQAIKVAKEQKRAVKAAKKAAAPAPAKKSAPKQKAAKVTQKAAPR
VGGKR*
BS12024.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL24-PC | 155 | CG9282-PC | 1..155 | 1..155 | 785 | 100 | Plus |
RpL24-PB | 155 | CG9282-PB | 1..155 | 1..155 | 785 | 100 | Plus |
RpL24-PA | 155 | CG9282-PA | 1..155 | 1..155 | 785 | 100 | Plus |
RpL24-like-PA | 191 | CG6764-PA | 1..151 | 1..142 | 172 | 30.5 | Plus |