Clone BS12026 Report

Search the DGRC for BS12026

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:120
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptCkIIbeta-RC
Protein status:BS12026.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12026.3prime Sequence

678 bp (678 high quality bases) assembled on 2006-06-16

> BS12026.3prime
ATGGTCTAGAAAGCTTTTAGTTTTTCGCTCGTAGTGGCATTTTAAAATTG
GCTGCTGCCTGCAGCTGAATTTGATAAGCTAAGCTGTGTATTTTAAATCC
ATATAGCCTTGGAACAAACTGATTAGTAGGACGCTTGGGACGATATTCGG
GATGCACCATGAAGAGCATGTGTGGAAATCCAGTGCCGAAATAGGCGCCA
TCGGTATGGTGGTGACGCGACGATTTTGGTGTGTACACGTCAATGCACTT
GGGGCAATAGGTCTTAACCATTGCCTCGCCGGGGATGTCCGACAGACCCA
ATGGCAGCATGGGCTGACTTTCACAGTAGACACGTGGACAATGTCCGAAA
TCGCCAGTTTGATATTTCTCGATCATTTGAGCGATGCCGCGATTTGTTAG
TATATATCTGGCGTGTATGAGGCCGTAGAGCATCTCGGCGGCCTGCTCGG
TCATGTCGGACTGCAGTGGATTGTCCTCGAGCTCGTCCTCCGGTTCCAAG
TCCAAGATCATGTCCAACGCTTGCCGATAGTTGGGTACCTGCTCATTTAA
ACCAGTTAAATTGAATTTATCCTGTATGTAGTCCTCATCCACCTCGCAGA
AGAACTCATTGCCACGAAGTCCACAGAACCAGGTGACCCAGGAGACTTCC
TCGGAGCTGCTCATGTCGACTGATAACT

BS12026.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG15224-PB 648 CkIIbeta-RB 1..648 664..17 3240 100 Minus
CG15224-PA 681 CkIIbeta-RA 34..681 664..17 3240 100 Minus
CG15224-PF 648 CkIIbeta-RF 1..648 664..17 3240 100 Minus
CG15224-PC 648 CkIIbeta-RC 1..648 664..17 3240 100 Minus
CG15224-PD 648 CkIIbeta-RD 1..648 664..17 3240 100 Minus
CG15224-PE 708 CkIIbeta-RE 1..639 664..26 3195 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:02:46
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIbeta-RH 2376 CG15224-RH 37..684 664..17 3240 100 Minus
CkIIbeta-RG 997 CG15224-RG 72..719 664..17 3240 100 Minus
CkIIbeta-RD 966 CG15224-RD 41..688 664..17 3240 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:02:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11793973..11794167 490..296 975 100 Minus
X 23542271 X 11794818..11795009 298..107 960 100 Minus
X 23542271 X 11793796..11793900 594..490 525 100 Minus
X 23542271 X 11795103..11795186 109..26 420 100 Minus
X 23542271 X 11793447..11793521 664..590 375 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:02:43 has no hits.

BS12026.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:35 Download gff for BS12026.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15224-PD 1..648 17..664 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:18 Download gff for BS12026.3prime
Subject Subject Range Query Range Percent Splice Strand
CkIIbeta-RD 36..688 17..669 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:15:24 Download gff for BS12026.3prime
Subject Subject Range Query Range Percent Splice Strand
CkIIbeta-RD 36..688 17..669 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:15:24 Download gff for BS12026.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11793798..11793900 490..592 100 -> Minus
X 11793974..11794165 298..489 100 -> Minus
X 11794819..11795008 108..297 100 -> Minus
X 11795105..11795201 11..107 94   Minus
X 11793436..11793518 593..676 94 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:18 Download gff for BS12026.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11687469..11687551 593..676 94 -> Minus
arm_X 11687831..11687933 490..592 100 -> Minus
arm_X 11688007..11688198 298..489 100 -> Minus
arm_X 11688852..11689041 108..297 100 -> Minus
arm_X 11689138..11689234 11..107 94   Minus

BS12026.5prime Sequence

678 bp (678 high quality bases) assembled on 2006-06-16

> BS12026.5prime
GAAGTTATCAGTCGACATGAGCAGCTCCGAGGAAGTCTCCTGGGTCACCT
GGTTCTGTGGACTTCGTGGCAATGAGTTCTTCTGCGAGGTGGATGAGGAC
TACATACAGGATAAATTCAATTTAACTGGTTTAAATGAGCAGGTACCCAA
CTATCGGCAAGCGTTGGACATGATCTTGGACTTGGAACCGGAGGACGAGC
TCGAGGACAATCCACTGCAGTCCGACATGACCGAGCAGGCCGCCGAGATG
CTCTACGGCCTCATACACGCCAGATATATACTAACAAATCGCGGCATCGC
TCAAATGATCGAGAAATATCAAACTGGCGATTTCGGACATTGTCCACGTG
TCTACTGTGAAAGTCAGCCCATGCTGCCATTGGGTCTGTCGGACATCCCC
GGCGAGGCAATGGTTAAGACCTATTGCCCCAAGTGCATTGACGTGTACAC
ACCAAAATCGTCGCGTCACCACCATACCGATGGCGCCTATTTCGGCACTG
GATTTCCACACATGCTCTTCATGGTGCATCCCGAATATCGTCCCAAGCGT
CCTACTAATCAGTTTGTTCCAAGGCTATATGGATTTAAAATACACAGCTT
AGCTTATCAAATTCAGCTGCAGGCAGCAGCCAATTTTAAAATGCCACTAC
GAGCGAAAAACTAAAAGCTTTCTAGACC

BS12026.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG15224-PB 648 CkIIbeta-RB 1..648 17..664 3240 100 Plus
CG15224-PA 681 CkIIbeta-RA 34..681 17..664 3240 100 Plus
CG15224-PF 648 CkIIbeta-RF 1..648 17..664 3240 100 Plus
CG15224-PC 648 CkIIbeta-RC 1..648 17..664 3240 100 Plus
CG15224-PD 648 CkIIbeta-RD 1..648 17..664 3240 100 Plus
CG15224-PE 708 CkIIbeta-RE 1..639 17..655 3195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:15:39
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIbeta-RH 2376 CG15224-RH 37..684 17..664 3240 100 Plus
CkIIbeta-RG 997 CG15224-RG 72..719 17..664 3240 100 Plus
CkIIbeta-RD 966 CG15224-RD 41..688 17..664 3240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:15:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11793973..11794167 191..385 975 100 Plus
X 23542271 X 11794818..11795009 383..574 960 100 Plus
X 23542271 X 11793796..11793900 87..191 525 100 Plus
X 23542271 X 11795103..11795186 572..655 420 100 Plus
X 23542271 X 11793447..11793521 17..91 375 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:15:36 has no hits.

BS12026.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:36 Download gff for BS12026.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15224-PD 1..648 17..664 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:58 Download gff for BS12026.5prime
Subject Subject Range Query Range Percent Splice Strand
CkIIbeta-RD 36..688 12..664 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:54 Download gff for BS12026.5prime
Subject Subject Range Query Range Percent Splice Strand
CkIIbeta-RD 36..688 12..664 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:54 Download gff for BS12026.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11794819..11795008 384..573 100 -> Plus
X 11795105..11795201 574..670 94   Plus
X 11793436..11793518 5..88 94 -> Plus
X 11793798..11793900 89..191 100 -> Plus
X 11793974..11794165 192..383 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:58 Download gff for BS12026.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11687469..11687551 5..88 94 -> Plus
arm_X 11687831..11687933 89..191 100 -> Plus
arm_X 11688852..11689041 384..573 100 -> Plus
arm_X 11688007..11688198 192..383 100 -> Plus
arm_X 11689138..11689234 574..670 94   Plus

BS12026.complete Sequence

680 bp assembled on 2006-11-01

GenBank Submission: FJ637039

> BS12026.complete
GAAGTTATCAGTCGACATGAGCAGCTCCGAGGAAGTCTCCTGGGTCACCT
GGTTCTGTGGACTTCGTGGCAATGAGTTCTTCTGCGAGGTGGATGAGGAC
TACATACAGGATAAATTCAATTTAACTGGTTTAAATGAGCAGGTACCCAA
CTATCGGCAAGCGTTGGACATGATCTTGGACTTGGAACCGGAGGACGAGC
TCGAGGACAATCCACTGCAGTCCGACATGACCGAGCAGGCCGCCGAGATG
CTCTACGGCCTCATACACGCCAGATATATACTAACAAATCGCGGCATCGC
TCAAATGATCGAGAAATATCAAACTGGCGATTTCGGACATTGTCCACGTG
TCTACTGTGAAAGTCAGCCCATGCTGCCATTGGGTCTGTCGGACATCCCC
GGCGAGGCAATGGTTAAGACCTATTGCCCCAAGTGCATTGACGTGTACAC
ACCAAAATCGTCGCGTCACCACCATACCGATGGCGCCTATTTCGGCACTG
GATTTCCACACATGCTCTTCATGGTGCATCCCGAATATCGTCCCAAGCGT
CCTACTAATCAGTTTGTTCCAAGGCTATATGGATTTAAAATACACAGCTT
AGCTTATCAAATTCAGCTGCAGGCAGCAGCCAATTTTAAAATGCCACTAC
GAGCGAAAAACTAAAAGCTTTCTAGACCAT

BS12026.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:49:41
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIbeta-RH 648 CG15224-PH 1..648 17..664 3240 100 Plus
CkIIbeta-RG 648 CG15224-PG 1..648 17..664 3240 100 Plus
CkIIbeta-RD 648 CG15224-PD 1..648 17..664 3240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:49:42
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIbeta-RH 2376 CG15224-RH 37..684 17..664 3240 100 Plus
CkIIbeta-RG 997 CG15224-RG 72..719 17..664 3240 100 Plus
CkIIbeta-RD 966 CG15224-RD 41..688 17..664 3240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11793973..11794167 191..385 975 100 Plus
X 23542271 X 11794818..11795009 383..574 960 100 Plus
X 23542271 X 11793796..11793900 87..191 525 100 Plus
X 23542271 X 11795103..11795186 572..655 420 100 Plus
X 23542271 X 11793447..11793521 17..91 375 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:49:40 has no hits.

BS12026.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:29 Download gff for BS12026.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIbeta-RC 1..648 17..664 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:36 Download gff for BS12026.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIbeta-RC 395..1051 5..664 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:35 Download gff for BS12026.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIbeta-RD 41..679 17..655 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:30 Download gff for BS12026.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIbeta-RC 395..1051 5..664 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:27:57 Download gff for BS12026.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIbeta-RD 41..679 17..655 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:27:57 Download gff for BS12026.complete
Subject Subject Range Query Range Percent Splice Strand
X 11795105..11795186 574..655 100   Plus
X 11793447..11793518 17..88 100 -> Plus
X 11793798..11793900 89..191 100 -> Plus
X 11793974..11794165 192..383 100 -> Plus
X 11794819..11795008 384..573 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:35 Download gff for BS12026.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11689138..11689219 574..655 100   Plus
arm_X 11687480..11687551 17..88 100 -> Plus
arm_X 11687831..11687933 89..191 100 -> Plus
arm_X 11688007..11688198 192..383 100 -> Plus
arm_X 11688852..11689041 384..573 100 -> Plus

BS12026.pep Sequence

Translation from 16 to 663

> BS12026.pep
MSSSEEVSWVTWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPNYRQAL
DMILDLEPEDELEDNPLQSDMTEQAAEMLYGLIHARYILTNRGIAQMIEK
YQTGDFGHCPRVYCESQPMLPLGLSDIPGEAMVKTYCPKCIDVYTPKSSR
HHHTDGAYFGTGFPHMLFMVHPEYRPKRPTNQFVPRLYGFKIHSLAYQIQ
LQAAANFKMPLRAKN*

BS12026.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:20
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIbeta-PH 215 CG15224-PH 1..215 1..215 1174 100 Plus
CkIIbeta-PG 215 CG15224-PG 1..215 1..215 1174 100 Plus
CkIIbeta-PD 215 CG15224-PD 1..215 1..215 1174 100 Plus
CkIIbeta-PC 215 CG15224-PC 1..215 1..215 1174 100 Plus
CkIIbeta-PF 215 CG15224-PF 1..215 1..215 1174 100 Plus