Clone Sequence Records
BS12026.3prime Sequence
678 bp (678 high quality bases) assembled on 2006-06-16
> BS12026.3prime
ATGGTCTAGAAAGCTTTTAGTTTTTCGCTCGTAGTGGCATTTTAAAATTG
GCTGCTGCCTGCAGCTGAATTTGATAAGCTAAGCTGTGTATTTTAAATCC
ATATAGCCTTGGAACAAACTGATTAGTAGGACGCTTGGGACGATATTCGG
GATGCACCATGAAGAGCATGTGTGGAAATCCAGTGCCGAAATAGGCGCCA
TCGGTATGGTGGTGACGCGACGATTTTGGTGTGTACACGTCAATGCACTT
GGGGCAATAGGTCTTAACCATTGCCTCGCCGGGGATGTCCGACAGACCCA
ATGGCAGCATGGGCTGACTTTCACAGTAGACACGTGGACAATGTCCGAAA
TCGCCAGTTTGATATTTCTCGATCATTTGAGCGATGCCGCGATTTGTTAG
TATATATCTGGCGTGTATGAGGCCGTAGAGCATCTCGGCGGCCTGCTCGG
TCATGTCGGACTGCAGTGGATTGTCCTCGAGCTCGTCCTCCGGTTCCAAG
TCCAAGATCATGTCCAACGCTTGCCGATAGTTGGGTACCTGCTCATTTAA
ACCAGTTAAATTGAATTTATCCTGTATGTAGTCCTCATCCACCTCGCAGA
AGAACTCATTGCCACGAAGTCCACAGAACCAGGTGACCCAGGAGACTTCC
TCGGAGCTGCTCATGTCGACTGATAACT
BS12026.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15224-PB | 648 | CkIIbeta-RB | 1..648 | 664..17 | 3240 | 100 | Minus |
CG15224-PA | 681 | CkIIbeta-RA | 34..681 | 664..17 | 3240 | 100 | Minus |
CG15224-PF | 648 | CkIIbeta-RF | 1..648 | 664..17 | 3240 | 100 | Minus |
CG15224-PC | 648 | CkIIbeta-RC | 1..648 | 664..17 | 3240 | 100 | Minus |
CG15224-PD | 648 | CkIIbeta-RD | 1..648 | 664..17 | 3240 | 100 | Minus |
CG15224-PE | 708 | CkIIbeta-RE | 1..639 | 664..26 | 3195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:02:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIbeta-RH | 2376 | CG15224-RH | 37..684 | 664..17 | 3240 | 100 | Minus |
CkIIbeta-RG | 997 | CG15224-RG | 72..719 | 664..17 | 3240 | 100 | Minus |
CkIIbeta-RD | 966 | CG15224-RD | 41..688 | 664..17 | 3240 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:02:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11793973..11794167 | 490..296 | 975 | 100 | Minus |
X | 23542271 | X | 11794818..11795009 | 298..107 | 960 | 100 | Minus |
X | 23542271 | X | 11793796..11793900 | 594..490 | 525 | 100 | Minus |
X | 23542271 | X | 11795103..11795186 | 109..26 | 420 | 100 | Minus |
X | 23542271 | X | 11793447..11793521 | 664..590 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:02:43 has no hits.
BS12026.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:35 Download gff for
BS12026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15224-PD | 1..648 | 17..664 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:18 Download gff for
BS12026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIbeta-RD | 36..688 | 17..669 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:15:24 Download gff for
BS12026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIbeta-RD | 36..688 | 17..669 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:15:24 Download gff for
BS12026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11793798..11793900 | 490..592 | 100 | -> | Minus |
X | 11793974..11794165 | 298..489 | 100 | -> | Minus |
X | 11794819..11795008 | 108..297 | 100 | -> | Minus |
X | 11795105..11795201 | 11..107 | 94 | | Minus |
X | 11793436..11793518 | 593..676 | 94 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:18 Download gff for
BS12026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11687469..11687551 | 593..676 | 94 | -> | Minus |
arm_X | 11687831..11687933 | 490..592 | 100 | -> | Minus |
arm_X | 11688007..11688198 | 298..489 | 100 | -> | Minus |
arm_X | 11688852..11689041 | 108..297 | 100 | -> | Minus |
arm_X | 11689138..11689234 | 11..107 | 94 | | Minus |
BS12026.5prime Sequence
678 bp (678 high quality bases) assembled on 2006-06-16
> BS12026.5prime
GAAGTTATCAGTCGACATGAGCAGCTCCGAGGAAGTCTCCTGGGTCACCT
GGTTCTGTGGACTTCGTGGCAATGAGTTCTTCTGCGAGGTGGATGAGGAC
TACATACAGGATAAATTCAATTTAACTGGTTTAAATGAGCAGGTACCCAA
CTATCGGCAAGCGTTGGACATGATCTTGGACTTGGAACCGGAGGACGAGC
TCGAGGACAATCCACTGCAGTCCGACATGACCGAGCAGGCCGCCGAGATG
CTCTACGGCCTCATACACGCCAGATATATACTAACAAATCGCGGCATCGC
TCAAATGATCGAGAAATATCAAACTGGCGATTTCGGACATTGTCCACGTG
TCTACTGTGAAAGTCAGCCCATGCTGCCATTGGGTCTGTCGGACATCCCC
GGCGAGGCAATGGTTAAGACCTATTGCCCCAAGTGCATTGACGTGTACAC
ACCAAAATCGTCGCGTCACCACCATACCGATGGCGCCTATTTCGGCACTG
GATTTCCACACATGCTCTTCATGGTGCATCCCGAATATCGTCCCAAGCGT
CCTACTAATCAGTTTGTTCCAAGGCTATATGGATTTAAAATACACAGCTT
AGCTTATCAAATTCAGCTGCAGGCAGCAGCCAATTTTAAAATGCCACTAC
GAGCGAAAAACTAAAAGCTTTCTAGACC
BS12026.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15224-PB | 648 | CkIIbeta-RB | 1..648 | 17..664 | 3240 | 100 | Plus |
CG15224-PA | 681 | CkIIbeta-RA | 34..681 | 17..664 | 3240 | 100 | Plus |
CG15224-PF | 648 | CkIIbeta-RF | 1..648 | 17..664 | 3240 | 100 | Plus |
CG15224-PC | 648 | CkIIbeta-RC | 1..648 | 17..664 | 3240 | 100 | Plus |
CG15224-PD | 648 | CkIIbeta-RD | 1..648 | 17..664 | 3240 | 100 | Plus |
CG15224-PE | 708 | CkIIbeta-RE | 1..639 | 17..655 | 3195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:15:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIbeta-RH | 2376 | CG15224-RH | 37..684 | 17..664 | 3240 | 100 | Plus |
CkIIbeta-RG | 997 | CG15224-RG | 72..719 | 17..664 | 3240 | 100 | Plus |
CkIIbeta-RD | 966 | CG15224-RD | 41..688 | 17..664 | 3240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:15:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11793973..11794167 | 191..385 | 975 | 100 | Plus |
X | 23542271 | X | 11794818..11795009 | 383..574 | 960 | 100 | Plus |
X | 23542271 | X | 11793796..11793900 | 87..191 | 525 | 100 | Plus |
X | 23542271 | X | 11795103..11795186 | 572..655 | 420 | 100 | Plus |
X | 23542271 | X | 11793447..11793521 | 17..91 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:15:36 has no hits.
BS12026.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:36 Download gff for
BS12026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15224-PD | 1..648 | 17..664 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:58 Download gff for
BS12026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIbeta-RD | 36..688 | 12..664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:54 Download gff for
BS12026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIbeta-RD | 36..688 | 12..664 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:54 Download gff for
BS12026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11794819..11795008 | 384..573 | 100 | -> | Plus |
X | 11795105..11795201 | 574..670 | 94 | | Plus |
X | 11793436..11793518 | 5..88 | 94 | -> | Plus |
X | 11793798..11793900 | 89..191 | 100 | -> | Plus |
X | 11793974..11794165 | 192..383 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:58 Download gff for
BS12026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11687469..11687551 | 5..88 | 94 | -> | Plus |
arm_X | 11687831..11687933 | 89..191 | 100 | -> | Plus |
arm_X | 11688852..11689041 | 384..573 | 100 | -> | Plus |
arm_X | 11688007..11688198 | 192..383 | 100 | -> | Plus |
arm_X | 11689138..11689234 | 574..670 | 94 | | Plus |
BS12026.complete Sequence
680 bp assembled on 2006-11-01
GenBank Submission: FJ637039
> BS12026.complete
GAAGTTATCAGTCGACATGAGCAGCTCCGAGGAAGTCTCCTGGGTCACCT
GGTTCTGTGGACTTCGTGGCAATGAGTTCTTCTGCGAGGTGGATGAGGAC
TACATACAGGATAAATTCAATTTAACTGGTTTAAATGAGCAGGTACCCAA
CTATCGGCAAGCGTTGGACATGATCTTGGACTTGGAACCGGAGGACGAGC
TCGAGGACAATCCACTGCAGTCCGACATGACCGAGCAGGCCGCCGAGATG
CTCTACGGCCTCATACACGCCAGATATATACTAACAAATCGCGGCATCGC
TCAAATGATCGAGAAATATCAAACTGGCGATTTCGGACATTGTCCACGTG
TCTACTGTGAAAGTCAGCCCATGCTGCCATTGGGTCTGTCGGACATCCCC
GGCGAGGCAATGGTTAAGACCTATTGCCCCAAGTGCATTGACGTGTACAC
ACCAAAATCGTCGCGTCACCACCATACCGATGGCGCCTATTTCGGCACTG
GATTTCCACACATGCTCTTCATGGTGCATCCCGAATATCGTCCCAAGCGT
CCTACTAATCAGTTTGTTCCAAGGCTATATGGATTTAAAATACACAGCTT
AGCTTATCAAATTCAGCTGCAGGCAGCAGCCAATTTTAAAATGCCACTAC
GAGCGAAAAACTAAAAGCTTTCTAGACCAT
BS12026.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:49:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIbeta-RH | 648 | CG15224-PH | 1..648 | 17..664 | 3240 | 100 | Plus |
CkIIbeta-RG | 648 | CG15224-PG | 1..648 | 17..664 | 3240 | 100 | Plus |
CkIIbeta-RD | 648 | CG15224-PD | 1..648 | 17..664 | 3240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:49:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIbeta-RH | 2376 | CG15224-RH | 37..684 | 17..664 | 3240 | 100 | Plus |
CkIIbeta-RG | 997 | CG15224-RG | 72..719 | 17..664 | 3240 | 100 | Plus |
CkIIbeta-RD | 966 | CG15224-RD | 41..688 | 17..664 | 3240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:49:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11793973..11794167 | 191..385 | 975 | 100 | Plus |
X | 23542271 | X | 11794818..11795009 | 383..574 | 960 | 100 | Plus |
X | 23542271 | X | 11793796..11793900 | 87..191 | 525 | 100 | Plus |
X | 23542271 | X | 11795103..11795186 | 572..655 | 420 | 100 | Plus |
X | 23542271 | X | 11793447..11793521 | 17..91 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:49:40 has no hits.
BS12026.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:29 Download gff for
BS12026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIbeta-RC | 1..648 | 17..664 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:36 Download gff for
BS12026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIbeta-RC | 395..1051 | 5..664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:35 Download gff for
BS12026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIbeta-RD | 41..679 | 17..655 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:30 Download gff for
BS12026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIbeta-RC | 395..1051 | 5..664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:27:57 Download gff for
BS12026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIbeta-RD | 41..679 | 17..655 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:27:57 Download gff for
BS12026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11795105..11795186 | 574..655 | 100 | | Plus |
X | 11793447..11793518 | 17..88 | 100 | -> | Plus |
X | 11793798..11793900 | 89..191 | 100 | -> | Plus |
X | 11793974..11794165 | 192..383 | 100 | -> | Plus |
X | 11794819..11795008 | 384..573 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:35 Download gff for
BS12026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11689138..11689219 | 574..655 | 100 | | Plus |
arm_X | 11687480..11687551 | 17..88 | 100 | -> | Plus |
arm_X | 11687831..11687933 | 89..191 | 100 | -> | Plus |
arm_X | 11688007..11688198 | 192..383 | 100 | -> | Plus |
arm_X | 11688852..11689041 | 384..573 | 100 | -> | Plus |
BS12026.pep Sequence
Translation from 16 to 663
> BS12026.pep
MSSSEEVSWVTWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPNYRQAL
DMILDLEPEDELEDNPLQSDMTEQAAEMLYGLIHARYILTNRGIAQMIEK
YQTGDFGHCPRVYCESQPMLPLGLSDIPGEAMVKTYCPKCIDVYTPKSSR
HHHTDGAYFGTGFPHMLFMVHPEYRPKRPTNQFVPRLYGFKIHSLAYQIQ
LQAAANFKMPLRAKN*
BS12026.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIbeta-PH | 215 | CG15224-PH | 1..215 | 1..215 | 1174 | 100 | Plus |
CkIIbeta-PG | 215 | CG15224-PG | 1..215 | 1..215 | 1174 | 100 | Plus |
CkIIbeta-PD | 215 | CG15224-PD | 1..215 | 1..215 | 1174 | 100 | Plus |
CkIIbeta-PC | 215 | CG15224-PC | 1..215 | 1..215 | 1174 | 100 | Plus |
CkIIbeta-PF | 215 | CG15224-PF | 1..215 | 1..215 | 1174 | 100 | Plus |