BS12027.complete Sequence
1868 bp assembled on 2008-08-15
GenBank Submission: KX804905
> BS12027.complete
GAAGTTATCAGTCGACATGTCGATTGTAAAGAAGTTGTCCTTCGATGCTG
GCTGCGAGGAGAAGGAGAAGTACACGGCCCAGAATGGCGATGATTACTAT
GGCCAGGCGCACACCGTCGACCTGGACGTGGCCAGCAAGTACTCCAAGCC
CAAGGAGGCCCACTGGCTGGTGCGGCGCATATTCTTCCTCAGCTGGATTA
CCAGTTACGATCGAGAGCAGGCGTTCGCCGATTTGATTGCCGGCATCACC
TTGGGCCTGACCATCATACCACAAAGTATTGCTTATGCCGCGCTGGCAGG
ACTCTCCTCGGAGTACGGCCTGTACTCCGCCTTCATTGGCTCCATCATCT
ATGTTTTCTTTGGGACGATACCACAGGTGTCCATTGGACCCACCAGTCTG
ATGGCCATTCTCACCCTGCAATTCTGCGCCGACAAACCGGTGCAGGTGGT
CATCGTGCTGGCCTTCCTCGCCGGTTTGGTGGAACTGGCCATGGGTGTGT
TCCAGCTGGGATTCATCGTGAGCTTCATACCAGCTCCGGTTACCAAGGCT
TTTACATCCGGCACTGCGCTGATCGTGGTCTTTGCCCAGATCAAGAATCT
CTTAGGTGTTCGCATAAAGGGATTCCCCTCGATCGGTGACTTTTTCACCA
ATATCCGGCCCACGGATGCCGCCATGGGAATCTCGTGCATGGTTGTGCTA
CTTTCGCTGCGGCTACTGTCGCAAGTGAATTTCAAGCAGGACACGCCTGT
TACGCGTCGCCTTAAGAAGATCCTGTGGTACATCAGTATTTCCCGCAATG
CTCTGGTTGTCTTCTTCACTGGCCTTTTGGTTTTCATCTGGGTGAAGAAG
AGCTCCATTGAGGCGGTCCCCTTTGCGCTTTCCTCAAAGGTTTCCTCGGC
CATGCCCACAATCAAGCTGCCGCCCTTCGCCTTCGAGTATCAGAATCGCA
CCTATGTGTTCACGGATATCCTCCATGAGCTGGGCAGCGGAATTGTTGTG
GTGCCAATTGTGGCGGTTTTGGCCAATGTGGCCATTGCCAAAGCCTTCGT
CAAGGATGGCAATCTGGATGCCTCGCAGGAGATGCTTACTTTGGGTTTGT
GCAACATAGCCGGCTCCTTCTTCAGTGCCATGCCCACCTGCGGAGCCTTC
ACCCGCTCGGCGGTGAGTCAGGCATCTGGAGTACGAACGCCAATGGCTGG
CATCTACACGGGATTGATAGTGCTCTCCGCATTGAGCATCCTGACCCCCT
ACTTCCAGTACATTCCAAAGGCTTCCCTATCGGCAGTTTTAATAGCAGCA
GTCATCTTTATGATTGATCTTGCTCCAGTTAAGGAGCTATGGCAGACCAA
CAAAAAGGACTTCTTTAGCTGGGTGGGAAGTTTTATCATCTGTTTGGTGG
CTGGCGTCGAGTTGGGTCTTCTCTTTGGCATTGTTCTCAGCATGGTGTTT
ATATTGCTGCGCTTGGGTAACCCCAAATTTGAGGTCACCCTTAAACAGCA
TGAATCCACGTACTATGTGCACATCGTTCCCCAATCGGATGTCTATTACA
CAGGCGTCGATGCACTACGATCTGAGTTGCGAGGAGCATGCAGATTGTAT
CACAATGATTTCCCAGTGGTTCTCGATTGCGCACGCTTTATGCAGTTCGA
TGCCACCTTCAGTGAGATGCTGATATCGGTGGCCAAGGAGATGGCCAGCC
ACGATGTCCTGCTAATCCTGCAGAACATGAGCCTCAAAGTGCAGCAGATG
CTGCCCGTGATGGGTAATGTGCGGTTCTGCCAGGAGGATAGCCAGCTTTC
GAGTCATCTGCAGGTGGAAAAGGAGGCACCTGTTGTGGAGGCCAAGCTAT
AGAAGCTTTCTAGACCAT
BS12027.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:51:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6125-RC | 1836 | CG6125-PC | 1..1836 | 17..1852 | 9180 | 100 | Plus |
| CG6125-RB | 1836 | CG6125-PB | 1..1836 | 17..1852 | 9180 | 100 | Plus |
| CG6125-RA | 1923 | CG6125-PA | 114..1923 | 43..1852 | 9035 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:51:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6125-RC | 2406 | CG6125-RC | 140..1975 | 17..1852 | 9180 | 100 | Plus |
| CG6125-RB | 2197 | CG6125-RB | 140..1975 | 17..1852 | 9180 | 100 | Plus |
| CG6125-RA | 2153 | CG6125-RA | 122..1931 | 43..1852 | 9035 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:51:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15404642..15405307 | 712..47 | 3330 | 100 | Minus |
| 3R | 32079331 | 3R | 15403029..15403384 | 1852..1497 | 1780 | 100 | Minus |
| 3R | 32079331 | 3R | 15404020..15404357 | 1049..712 | 1690 | 100 | Minus |
| 3R | 32079331 | 3R | 15403686..15403949 | 1312..1049 | 1320 | 100 | Minus |
| 3R | 32079331 | 3R | 15403439..15403625 | 1498..1312 | 935 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:51:07 has no hits.
BS12027.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:22:25 Download gff for
BS12027.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6125-RB | 133..1983 | 9..1862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:29 Download gff for
BS12027.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6125-RB | 137..1972 | 17..1852 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:09:57 Download gff for
BS12027.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6125-RB | 137..1972 | 17..1852 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:34 Download gff for
BS12027.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6125-RB | 140..1975 | 17..1852 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:34 Download gff for
BS12027.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15403439..15403624 | 1313..1498 | 100 | <- | Minus |
| 3R | 15403686..15403948 | 1050..1312 | 100 | <- | Minus |
| 3R | 15403029..15403382 | 1499..1852 | 100 | <- | Minus |
| 3R | 15404020..15404356 | 713..1049 | 100 | <- | Minus |
| 3R | 15404642..15405306 | 48..712 | 100 | <- | Minus |
| 3R | 15406901..15406931 | 17..47 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:29 Download gff for
BS12027.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11228751..11229104 | 1499..1852 | 100 | <- | Minus |
| arm_3R | 11229161..11229346 | 1313..1498 | 100 | <- | Minus |
| arm_3R | 11229408..11229670 | 1050..1312 | 100 | <- | Minus |
| arm_3R | 11229742..11230078 | 713..1049 | 100 | <- | Minus |
| arm_3R | 11230364..11231028 | 48..712 | 100 | <- | Minus |
| arm_3R | 11232623..11232653 | 17..47 | 100 | | Minus |
BS12027.pep Sequence
Translation from 16 to 1851
> BS12027.pep
MSIVKKLSFDAGCEEKEKYTAQNGDDYYGQAHTVDLDVASKYSKPKEAHW
LVRRIFFLSWITSYDREQAFADLIAGITLGLTIIPQSIAYAALAGLSSEY
GLYSAFIGSIIYVFFGTIPQVSIGPTSLMAILTLQFCADKPVQVVIVLAF
LAGLVELAMGVFQLGFIVSFIPAPVTKAFTSGTALIVVFAQIKNLLGVRI
KGFPSIGDFFTNIRPTDAAMGISCMVVLLSLRLLSQVNFKQDTPVTRRLK
KILWYISISRNALVVFFTGLLVFIWVKKSSIEAVPFALSSKVSSAMPTIK
LPPFAFEYQNRTYVFTDILHELGSGIVVVPIVAVLANVAIAKAFVKDGNL
DASQEMLTLGLCNIAGSFFSAMPTCGAFTRSAVSQASGVRTPMAGIYTGL
IVLSALSILTPYFQYIPKASLSAVLIAAVIFMIDLAPVKELWQTNKKDFF
SWVGSFIICLVAGVELGLLFGIVLSMVFILLRLGNPKFEVTLKQHESTYY
VHIVPQSDVYYTGVDALRSELRGACRLYHNDFPVVLDCARFMQFDATFSE
MLISVAKEMASHDVLLILQNMSLKVQQMLPVMGNVRFCQEDSQLSSHLQV
EKEAPVVEAKL*
BS12027.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:36:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6125-PC | 611 | CG6125-PC | 1..611 | 1..611 | 3070 | 100 | Plus |
| CG6125-PB | 611 | CG6125-PB | 1..611 | 1..611 | 3070 | 100 | Plus |
| CG6125-PA | 640 | CG6125-PA | 38..640 | 9..611 | 3027 | 99.7 | Plus |
| CG5404-PA | 627 | CG5404-PA | 36..601 | 45..601 | 1035 | 38.9 | Plus |
| CG6928-PA | 612 | CG6928-PA | 6..593 | 50..611 | 993 | 39.2 | Plus |
