BS12028.complete Sequence
1571 bp assembled on 2006-11-01
GenBank Submission: FJ637040
> BS12028.complete
GAAGTTATCAGTCGACATGTGGACCATTCTCCTGACGATCCTAATCGCGG
GTCTGCTGTACAGATATGTGAAGCGGCACTACACTCACTGGCAGCGATTG
GGAGTCGATGAGGAGCCGGCAAAGATTCCCTTTGGCGTAATGGATACTGT
CATGAAGCAGGAACGAAGTTTGGGCATGGCTCTGGCTGATATATACGCCC
GGCACGAGGGCAAAATCGTTGGCATATACATGTTGAACAAACGAAGTATC
CTGATCCGAGATGCCCAATTGGCTCGCCAAATCATGACCAGCGATTTCGC
CAGTTTCCACGATCGCGGGGTGTACGTGGACGAGGATAAGGACCCGTTGT
CGGCCAACCTTTTTAACCTAAGAGGTGCTTCATGGCGAAATCTACGTCAG
AAACTTACGCCGTCGTTCTCCTCCGGCAAAATTAAGGGCATGTTCGGCAC
CATCGACGACGTGGGCGATAAGTTGGTGCAGCATTTGGAGGGGGCCCTTG
ACCAAAGCGATGAAGTGGAGATCAAGGATGTGATGACCACGTATGCGGTG
GACATCATTGGGTCAGTCATTTTTGGCTTGGAGATAGACAGCTTCCGAAA
TCCAAAAAACGAGTTCCGCGAGATCAGCAGCTCTACGTCTAGGGATGAAT
CTCTGCTGCTGAAGATTCACAATATGTCCATGTTCATTTGTCCACCGATT
GCTAAGCTAATGAACCGCTTGGGCTACGAAAGCCGCATTCTGACATCCCT
GCGAGACATGATGAAGCGCACAATCGAGTTCCGGGAGGAGCACAACGTGG
TGCGAAAGGACATGCTGCAGCTGCTGATCCGCCTCCGAAATACGGGCAAG
ATTGGCGAGGACGACGACCAGGTGTGGGACATGGAAACCGCACAGGAGCA
GCTGAAGTCTATGTCGATCGAGAAGATTGCCGCCCAGGCATTCCTGTTCT
ACGTGGCGGGCTCGGAATCCACAGCTGCGGCGTCTGCCTTCACTCTCTAC
GAGCTGTCCATGTATCCGGAACTGCTGAAGGAGGCGCAAGAAGAAGTGGA
TGCTGTGCTGATGAAGCACAATCTGAAGCCCAAGGATAGGTTCACCTACG
AGGCGGTGCAGGACTTAAAGTTTCTGGACATCTGCATCATGGAAACCATT
CGCAAATACCCCGGGCTACCATTCCTCAATCGAGAGTGCACCGAAGATTA
TCCCGTACCTGGAACTAATCACATCATAGCCAAGGGAACACCCATTCTGA
TCTCGCTCTTTGGCATGCAGCGTGATCCCGTCTATTTTCCCAATCCCAAT
GGCTACGATCCCCATCGCTTCGATTCAAATAACATGAACTACGATCAGGC
AGCTTATATGCCTTTTGGAGAGGGTCCTAGGCACTGCATAGCTCTTCGCA
TGGGAAAAGTCAACTCCAAGGTGGCGGTGGCTAAGATTTTGGCCAATTTT
GATCTGGTTCAATCTCCACGCAAGGAGGTGGAGTTCCGTTTCGATGCCGC
CCCTGTTTTAGTGACCAAGGAGCCGTTGAAGCTGCGCTTGACCAAGAGAA
AGTAAAAGCTTTCTAGACCAT
BS12028.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:00:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp6d2-RA | 1539 | CG4373-PA | 1..1539 | 17..1555 | 7695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:00:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp6d2-RA | 1759 | CG4373-RA | 113..1652 | 17..1556 | 7700 | 100 | Plus |
| nsr-RB | 2523 | CG3875-RB | 2148..2523 | 1142..767 | 1880 | 100 | Minus |
| nsr-RB | 2523 | CG3875-RB | 1843..2092 | 1391..1142 | 1250 | 100 | Minus |
| nsr-RB | 2523 | CG3875-RB | 1608..1774 | 1556..1390 | 835 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:00:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22653738..22654418 | 697..17 | 3405 | 100 | Minus |
| 2R | 25286936 | 2R | 22653220..22653665 | 1142..697 | 2230 | 100 | Minus |
| 2R | 25286936 | 2R | 22652915..22653164 | 1391..1142 | 1250 | 100 | Minus |
| 2R | 25286936 | 2R | 22652680..22652846 | 1556..1390 | 835 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:00:31 has no hits.
BS12028.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:01 Download gff for
BS12028.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6d2-RA | 1..1539 | 17..1555 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:12 Download gff for
BS12028.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6d2-RA | 103..1649 | 8..1556 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:43:36 Download gff for
BS12028.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6d2-RA | 113..1649 | 17..1553 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:01 Download gff for
BS12028.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6d2-RA | 103..1649 | 8..1556 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:48:23 Download gff for
BS12028.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6d2-RA | 113..1649 | 17..1553 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:48:23 Download gff for
BS12028.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22652683..22652844 | 1392..1553 | 100 | <- | Minus |
| 2R | 22652915..22653163 | 1143..1391 | 100 | <- | Minus |
| 2R | 22653220..22653665 | 697..1142 | 100 | <- | Minus |
| 2R | 22653739..22654418 | 17..696 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:43:36 Download gff for
BS12028.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18540188..18540349 | 1392..1553 | 100 | <- | Minus |
| arm_2R | 18540420..18540668 | 1143..1391 | 100 | <- | Minus |
| arm_2R | 18540725..18541170 | 697..1142 | 100 | <- | Minus |
| arm_2R | 18541244..18541923 | 17..696 | 100 | | Minus |
BS12028.pep Sequence
Translation from 16 to 1554
> BS12028.pep
MWTILLTILIAGLLYRYVKRHYTHWQRLGVDEEPAKIPFGVMDTVMKQER
SLGMALADIYARHEGKIVGIYMLNKRSILIRDAQLARQIMTSDFASFHDR
GVYVDEDKDPLSANLFNLRGASWRNLRQKLTPSFSSGKIKGMFGTIDDVG
DKLVQHLEGALDQSDEVEIKDVMTTYAVDIIGSVIFGLEIDSFRNPKNEF
REISSSTSRDESLLLKIHNMSMFICPPIAKLMNRLGYESRILTSLRDMMK
RTIEFREEHNVVRKDMLQLLIRLRNTGKIGEDDDQVWDMETAQEQLKSMS
IEKIAAQAFLFYVAGSESTAAASAFTLYELSMYPELLKEAQEEVDAVLMK
HNLKPKDRFTYEAVQDLKFLDICIMETIRKYPGLPFLNRECTEDYPVPGT
NHIIAKGTPILISLFGMQRDPVYFPNPNGYDPHRFDSNNMNYDQAAYMPF
GEGPRHCIALRMGKVNSKVAVAKILANFDLVQSPRKEVEFRFDAAPVLVT
KEPLKLRLTKRK*
BS12028.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp6d2-PA | 512 | CG4373-PA | 1..512 | 1..512 | 2640 | 100 | Plus |
| Cyp6d4-PA | 515 | CG12800-PA | 5..510 | 4..511 | 1398 | 50.4 | Plus |
| Cyp6d5-PA | 508 | CG3050-PA | 4..508 | 4..512 | 1290 | 49 | Plus |
| Cyp6a22-PC | 499 | CG10240-PC | 7..481 | 4..499 | 764 | 33.6 | Plus |
| Cyp6a22-PB | 499 | CG10240-PB | 7..481 | 4..499 | 764 | 33.6 | Plus |
