Clone Sequence Records
BS12031.3prime Sequence
822 bp (822 high quality bases) assembled on 2006-06-16
> BS12031.3prime
ATGGTCTAGAAAGCTTCTAACTGCTTAGAGCTAAGGATGCGATGGACATG
ACTACGGCGACCGTTGTCCACTTGCGTTGTATAGTTGAGGCCTTATCATA
GAAAATAGTCTCCCGGCGCTTGGTGTAGTTGGTGCCAACTAGGATAAACG
CACAGGTGATTGGGGTGGGGGACTCGAGTTGATCTCTAGGAATGCGGGTG
CGAACGGTCATGCTGTAGAGGCCACTGGGGTCCTGGTCCAACTGCGTCAG
TACCGAGTCCAGTATGTGGGTGTCAAACATGACAGACAGCATGGGTTGCG
GGAAGACGTGCTGGACCGCACACATGATGTCCACGTCCATACGCGAACCG
CTCATCCGCGCTTCCAGCATGAAATCCGATTCAGGAACGATTATTTGCAG
GCGGGCACTCCGCTTATCCGTGGACTCGAAGGTCTGCACTGCACAGGTGT
ACTCCCCCGTCATGTTCCAGTCGGGATTCTTTATCGATATAACACCGGGA
CTGCCCTCCATAGTGAATATTTTGGTGTCTATCTTCGACTTCATGAAGCC
CATGGCGAACCCCTTGACCGATGGTATCCACTGGTAGATGGAGTGGTTAT
TGAACAGCCATTTGAGGACGAATCCTTGCTCCCGCGGCCCGATCTCCACC
TCGCAGTCGAGCACCAGAGGATCGGGTTCGTGGTCTCGGAACAGCGTGTA
GGTGCGTGGCACCCGCAGGTTGGTGATGCGCACCGAGTGAGTGACCGAGA
GTAACGCGAGCACGGCCAGCAGCGTGGCGCGTAGGCCTCGTCCTCGCCAG
CCCGCCATGTCGACTGATAACT
BS12031.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13532-PA | 792 | CG13532-RA | 1..792 | 808..17 | 3960 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:49:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13532-RA | 1918 | CG13532-RA | 606..1398 | 809..17 | 3965 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:49:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22871941..22872136 | 745..550 | 980 | 100 | Minus |
2R | 25286936 | 2R | 22873455..22873641 | 278..92 | 920 | 99.5 | Minus |
2R | 25286936 | 2R | 22872229..22872392 | 551..388 | 820 | 100 | Minus |
2R | 25286936 | 2R | 22873267..22873378 | 388..277 | 560 | 100 | Minus |
2R | 25286936 | 2R | 22873827..22873907 | 97..17 | 405 | 100 | Minus |
2R | 25286936 | 2R | 22871795..22871859 | 809..745 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:49:51 has no hits.
BS12031.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:37 Download gff for
BS12031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13532-PA | 1..792 | 17..808 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:55 Download gff for
BS12031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13532-RA | 598..1401 | 10..817 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:35 Download gff for
BS12031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13532-RA | 598..1401 | 10..817 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:35 Download gff for
BS12031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22871787..22871859 | 745..817 | 94 | -> | Minus |
2R | 22871942..22872135 | 551..744 | 100 | -> | Minus |
2R | 22872230..22872392 | 388..550 | 100 | -> | Minus |
2R | 22873268..22873376 | 279..387 | 100 | -> | Minus |
2R | 22873455..22873636 | 97..278 | 100 | -> | Minus |
2R | 22873828..22873910 | 10..96 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:55 Download gff for
BS12031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18759310..18759382 | 745..817 | 94 | -> | Minus |
arm_2R | 18759465..18759658 | 551..744 | 100 | -> | Minus |
arm_2R | 18759753..18759915 | 388..550 | 100 | -> | Minus |
arm_2R | 18760791..18760899 | 279..387 | 100 | -> | Minus |
arm_2R | 18760978..18761159 | 97..278 | 100 | -> | Minus |
arm_2R | 18761351..18761433 | 10..96 | 95 | | Minus |
BS12031.5prime Sequence
822 bp (822 high quality bases) assembled on 2006-06-16
> BS12031.5prime
GAAGTTATCAGTCGACATGGCGGGCTGGCGAGGACGAGGCCTACGCGCCA
CGCTGCTGGCCGTGCTCGCGTTACTCTCGGTCACTCACTCGGTGCGCATC
ACCAACCTGCGGGTGCCACGCACCTACACGCTGTTCCGAGACCACGAACC
CGATCCTCTGGTGCTCGACTGCGAGGTGGAGATCGGGCCGCGGGAGCAAG
GATTCGTCCTCAAATGGCTGTTCAATAACCACTCCATCTACCAGTGGATA
CCATCGGTCAAGGGGTTCGCCATGGGCTTCATGAAGTCGAAGATAGACAC
CAAAATATTCACTATGGAGGGCAGTCCCGGTGTTATATCGATAAAGAATC
CCGACTGGAACATGACGGGGGAGTACACCTGTGCAGTGCAGACCTTCGAG
TCCACGGATAAGCGGAGTGCCCGCCTGCAAATAATCGTTCCTGAATCGGA
TTTCATGCTGGAAGCGCGGATGAGCGGTTCGCGTATGGACGTGGACATCA
TGTGTGCGGTCCAGCACGTCTTCCCGCAACCCATGCTGTCTGTCATGTTT
GACACCCACATACTGGACTCGGTACTGACGCAGTTGGACCAGGACCCCAG
TGGCCTCTACAGCATGACCGTTCGCACCCGCATTCCTAGAGATCAACTCG
AGTCCCCCACCCCAATCACCTGTGCGTTTATCCTAGTTGGCACCAACTAC
ACCAAGCGCCGGGAGACTATTTTCTATGATAAGGCCTCAACTATACAACG
CAAGTGGACAACGGTCGCCGTAGTCATGTCCATCGCATCCTTAGCTCTAA
GCAGTTAGAAGCTTTCTAGACC
BS12031.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13532-PA | 792 | CG13532-RA | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:06:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13532-RA | 1918 | CG13532-RA | 606..1398 | 16..808 | 3965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:06:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22871941..22872136 | 80..275 | 980 | 100 | Plus |
2R | 25286936 | 2R | 22873455..22873641 | 547..733 | 920 | 99.5 | Plus |
2R | 25286936 | 2R | 22872229..22872392 | 274..437 | 820 | 100 | Plus |
2R | 25286936 | 2R | 22873267..22873378 | 437..548 | 560 | 100 | Plus |
2R | 25286936 | 2R | 22873827..22873907 | 728..808 | 405 | 100 | Plus |
2R | 25286936 | 2R | 22871795..22871859 | 16..80 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:06:42 has no hits.
BS12031.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:38 Download gff for
BS12031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13532-PA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:05 Download gff for
BS12031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13532-RA | 598..1401 | 8..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:51:38 Download gff for
BS12031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13532-RA | 598..1401 | 8..815 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:51:38 Download gff for
BS12031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22871787..22871859 | 8..80 | 94 | -> | Plus |
2R | 22871942..22872135 | 81..274 | 100 | -> | Plus |
2R | 22872230..22872392 | 275..437 | 100 | -> | Plus |
2R | 22873268..22873376 | 438..546 | 100 | -> | Plus |
2R | 22873455..22873636 | 547..728 | 100 | -> | Plus |
2R | 22873828..22873910 | 729..815 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:05 Download gff for
BS12031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18759310..18759382 | 8..80 | 94 | -> | Plus |
arm_2R | 18759465..18759658 | 81..274 | 100 | -> | Plus |
arm_2R | 18759753..18759915 | 275..437 | 100 | -> | Plus |
arm_2R | 18760791..18760899 | 438..546 | 100 | -> | Plus |
arm_2R | 18760978..18761159 | 547..728 | 100 | -> | Plus |
arm_2R | 18761351..18761433 | 729..815 | 95 | | Plus |
BS12031.complete Sequence
824 bp assembled on 2006-11-01
GenBank Submission: FJ637041
> BS12031.complete
GAAGTTATCAGTCGACATGGCGGGCTGGCGAGGACGAGGCCTACGCGCCA
CGCTGCTGGCCGTGCTCGCGTTACTCTCGGTCACTCACTCGGTGCGCATC
ACCAACCTGCGGGTGCCACGCACCTACACGCTGTTCCGAGACCACGAACC
CGATCCTCTGGTGCTCGACTGCGAGGTGGAGATCGGGCCGCGGGAGCAAG
GATTCGTCCTCAAATGGCTGTTCAATAACCACTCCATCTACCAGTGGATA
CCATCGGTCAAGGGGTTCGCCATGGGCTTCATGAAGTCGAAGATAGACAC
CAAAATATTCACTATGGAGGGCAGTCCCGGTGTTATATCGATAAAGAATC
CCGACTGGAACATGACGGGGGAGTACACCTGTGCAGTGCAGACCTTCGAG
TCCACGGATAAGCGGAGTGCCCGCCTGCAAATAATCGTTCCTGAATCGGA
TTTCATGCTGGAAGCGCGGATGAGCGGTTCGCGTATGGACGTGGACATCA
TGTGTGCGGTCCAGCACGTCTTCCCGCAACCCATGCTGTCTGTCATGTTT
GACACCCACATACTGGACTCGGTACTGACGCAGTTGGACCAGGACCCCAG
TGGCCTCTACAGCATGACCGTTCGCACCCGCATTCCTAGAGATCAACTCG
AGTCCCCCACCCCAATCACCTGTGCGTTTATCCTAGTTGGCACCAACTAC
ACCAAGCGCCGGGAGACTATTTTCTATGATAAGGCCTCAACTATACAACG
CAAGTGGACAACGGTCGCCGTAGTCATGTCCATCGCATCCTTAGCTCTAA
GCAGTTAGAAGCTTTCTAGACCAT
BS12031.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:00:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13532-RA | 792 | CG13532-PA | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:00:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13532-RA | 1918 | CG13532-RA | 606..1398 | 16..808 | 3965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:00:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22871941..22872136 | 80..275 | 980 | 100 | Plus |
2R | 25286936 | 2R | 22873455..22873641 | 547..733 | 920 | 99.5 | Plus |
2R | 25286936 | 2R | 22872229..22872392 | 274..437 | 820 | 100 | Plus |
2R | 25286936 | 2R | 22873267..22873378 | 437..548 | 560 | 100 | Plus |
2R | 25286936 | 2R | 22873827..22873907 | 728..808 | 405 | 100 | Plus |
2R | 25286936 | 2R | 22871795..22871859 | 16..80 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:00:25 has no hits.
BS12031.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:02 Download gff for
BS12031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13532-RA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:14 Download gff for
BS12031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13532-RA | 496..1299 | 8..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:43:32 Download gff for
BS12031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13532-RA | 607..1398 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:02 Download gff for
BS12031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13532-RA | 496..1299 | 8..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:48:20 Download gff for
BS12031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13532-RA | 607..1398 | 17..808 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:48:20 Download gff for
BS12031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22872230..22872392 | 275..437 | 100 | -> | Plus |
2R | 22873268..22873376 | 438..546 | 100 | -> | Plus |
2R | 22873455..22873636 | 547..728 | 100 | -> | Plus |
2R | 22873828..22873907 | 729..808 | 100 | | Plus |
2R | 22871942..22872135 | 81..274 | 100 | -> | Plus |
2R | 22871796..22871859 | 17..80 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:43:32 Download gff for
BS12031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18759319..18759382 | 17..80 | 100 | -> | Plus |
arm_2R | 18759465..18759658 | 81..274 | 100 | -> | Plus |
arm_2R | 18759753..18759915 | 275..437 | 100 | -> | Plus |
arm_2R | 18760791..18760899 | 438..546 | 100 | -> | Plus |
arm_2R | 18760978..18761159 | 547..728 | 100 | -> | Plus |
arm_2R | 18761351..18761430 | 729..808 | 100 | | Plus |
BS12031.pep Sequence
Translation from 16 to 807
> BS12031.pep
MAGWRGRGLRATLLAVLALLSVTHSVRITNLRVPRTYTLFRDHEPDPLVL
DCEVEIGPREQGFVLKWLFNNHSIYQWIPSVKGFAMGFMKSKIDTKIFTM
EGSPGVISIKNPDWNMTGEYTCAVQTFESTDKRSARLQIIVPESDFMLEA
RMSGSRMDVDIMCAVQHVFPQPMLSVMFDTHILDSVLTQLDQDPSGLYSM
TVRTRIPRDQLESPTPITCAFILVGTNYTKRRETIFYDKASTIQRKWTTV
AVVMSIASLALSS*
BS12031.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13532-PA | 263 | CG13532-PA | 1..263 | 1..263 | 1364 | 100 | Plus |
CG5597-PA | 260 | CG5597-PA | 33..173 | 39..177 | 168 | 27.6 | Plus |