Clone BS12031 Report

Search the DGRC for BS12031

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:120
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptCG13532-RA
Protein status:BS12031.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12031.3prime Sequence

822 bp (822 high quality bases) assembled on 2006-06-16

> BS12031.3prime
ATGGTCTAGAAAGCTTCTAACTGCTTAGAGCTAAGGATGCGATGGACATG
ACTACGGCGACCGTTGTCCACTTGCGTTGTATAGTTGAGGCCTTATCATA
GAAAATAGTCTCCCGGCGCTTGGTGTAGTTGGTGCCAACTAGGATAAACG
CACAGGTGATTGGGGTGGGGGACTCGAGTTGATCTCTAGGAATGCGGGTG
CGAACGGTCATGCTGTAGAGGCCACTGGGGTCCTGGTCCAACTGCGTCAG
TACCGAGTCCAGTATGTGGGTGTCAAACATGACAGACAGCATGGGTTGCG
GGAAGACGTGCTGGACCGCACACATGATGTCCACGTCCATACGCGAACCG
CTCATCCGCGCTTCCAGCATGAAATCCGATTCAGGAACGATTATTTGCAG
GCGGGCACTCCGCTTATCCGTGGACTCGAAGGTCTGCACTGCACAGGTGT
ACTCCCCCGTCATGTTCCAGTCGGGATTCTTTATCGATATAACACCGGGA
CTGCCCTCCATAGTGAATATTTTGGTGTCTATCTTCGACTTCATGAAGCC
CATGGCGAACCCCTTGACCGATGGTATCCACTGGTAGATGGAGTGGTTAT
TGAACAGCCATTTGAGGACGAATCCTTGCTCCCGCGGCCCGATCTCCACC
TCGCAGTCGAGCACCAGAGGATCGGGTTCGTGGTCTCGGAACAGCGTGTA
GGTGCGTGGCACCCGCAGGTTGGTGATGCGCACCGAGTGAGTGACCGAGA
GTAACGCGAGCACGGCCAGCAGCGTGGCGCGTAGGCCTCGTCCTCGCCAG
CCCGCCATGTCGACTGATAACT

BS12031.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG13532-PA 792 CG13532-RA 1..792 808..17 3960 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:49:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG13532-RA 1918 CG13532-RA 606..1398 809..17 3965 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:49:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22871941..22872136 745..550 980 100 Minus
2R 25286936 2R 22873455..22873641 278..92 920 99.5 Minus
2R 25286936 2R 22872229..22872392 551..388 820 100 Minus
2R 25286936 2R 22873267..22873378 388..277 560 100 Minus
2R 25286936 2R 22873827..22873907 97..17 405 100 Minus
2R 25286936 2R 22871795..22871859 809..745 325 100 Minus
Blast to na_te.dros performed on 2015-02-02 17:49:51 has no hits.

BS12031.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:37 Download gff for BS12031.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13532-PA 1..792 17..808 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:55 Download gff for BS12031.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13532-RA 598..1401 10..817 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:35 Download gff for BS12031.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13532-RA 598..1401 10..817 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:35 Download gff for BS12031.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22871787..22871859 745..817 94 -> Minus
2R 22871942..22872135 551..744 100 -> Minus
2R 22872230..22872392 388..550 100 -> Minus
2R 22873268..22873376 279..387 100 -> Minus
2R 22873455..22873636 97..278 100 -> Minus
2R 22873828..22873910 10..96 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:55 Download gff for BS12031.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18759310..18759382 745..817 94 -> Minus
arm_2R 18759465..18759658 551..744 100 -> Minus
arm_2R 18759753..18759915 388..550 100 -> Minus
arm_2R 18760791..18760899 279..387 100 -> Minus
arm_2R 18760978..18761159 97..278 100 -> Minus
arm_2R 18761351..18761433 10..96 95   Minus

BS12031.5prime Sequence

822 bp (822 high quality bases) assembled on 2006-06-16

> BS12031.5prime
GAAGTTATCAGTCGACATGGCGGGCTGGCGAGGACGAGGCCTACGCGCCA
CGCTGCTGGCCGTGCTCGCGTTACTCTCGGTCACTCACTCGGTGCGCATC
ACCAACCTGCGGGTGCCACGCACCTACACGCTGTTCCGAGACCACGAACC
CGATCCTCTGGTGCTCGACTGCGAGGTGGAGATCGGGCCGCGGGAGCAAG
GATTCGTCCTCAAATGGCTGTTCAATAACCACTCCATCTACCAGTGGATA
CCATCGGTCAAGGGGTTCGCCATGGGCTTCATGAAGTCGAAGATAGACAC
CAAAATATTCACTATGGAGGGCAGTCCCGGTGTTATATCGATAAAGAATC
CCGACTGGAACATGACGGGGGAGTACACCTGTGCAGTGCAGACCTTCGAG
TCCACGGATAAGCGGAGTGCCCGCCTGCAAATAATCGTTCCTGAATCGGA
TTTCATGCTGGAAGCGCGGATGAGCGGTTCGCGTATGGACGTGGACATCA
TGTGTGCGGTCCAGCACGTCTTCCCGCAACCCATGCTGTCTGTCATGTTT
GACACCCACATACTGGACTCGGTACTGACGCAGTTGGACCAGGACCCCAG
TGGCCTCTACAGCATGACCGTTCGCACCCGCATTCCTAGAGATCAACTCG
AGTCCCCCACCCCAATCACCTGTGCGTTTATCCTAGTTGGCACCAACTAC
ACCAAGCGCCGGGAGACTATTTTCTATGATAAGGCCTCAACTATACAACG
CAAGTGGACAACGGTCGCCGTAGTCATGTCCATCGCATCCTTAGCTCTAA
GCAGTTAGAAGCTTTCTAGACC

BS12031.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:26:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG13532-PA 792 CG13532-RA 1..792 17..808 3960 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:06:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG13532-RA 1918 CG13532-RA 606..1398 16..808 3965 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:06:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22871941..22872136 80..275 980 100 Plus
2R 25286936 2R 22873455..22873641 547..733 920 99.5 Plus
2R 25286936 2R 22872229..22872392 274..437 820 100 Plus
2R 25286936 2R 22873267..22873378 437..548 560 100 Plus
2R 25286936 2R 22873827..22873907 728..808 405 100 Plus
2R 25286936 2R 22871795..22871859 16..80 325 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:06:42 has no hits.

BS12031.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:38 Download gff for BS12031.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13532-PA 1..792 17..808 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:05 Download gff for BS12031.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13532-RA 598..1401 8..815 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:51:38 Download gff for BS12031.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13532-RA 598..1401 8..815 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:51:38 Download gff for BS12031.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22871787..22871859 8..80 94 -> Plus
2R 22871942..22872135 81..274 100 -> Plus
2R 22872230..22872392 275..437 100 -> Plus
2R 22873268..22873376 438..546 100 -> Plus
2R 22873455..22873636 547..728 100 -> Plus
2R 22873828..22873910 729..815 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:05 Download gff for BS12031.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18759310..18759382 8..80 94 -> Plus
arm_2R 18759465..18759658 81..274 100 -> Plus
arm_2R 18759753..18759915 275..437 100 -> Plus
arm_2R 18760791..18760899 438..546 100 -> Plus
arm_2R 18760978..18761159 547..728 100 -> Plus
arm_2R 18761351..18761433 729..815 95   Plus

BS12031.complete Sequence

824 bp assembled on 2006-11-01

GenBank Submission: FJ637041

> BS12031.complete
GAAGTTATCAGTCGACATGGCGGGCTGGCGAGGACGAGGCCTACGCGCCA
CGCTGCTGGCCGTGCTCGCGTTACTCTCGGTCACTCACTCGGTGCGCATC
ACCAACCTGCGGGTGCCACGCACCTACACGCTGTTCCGAGACCACGAACC
CGATCCTCTGGTGCTCGACTGCGAGGTGGAGATCGGGCCGCGGGAGCAAG
GATTCGTCCTCAAATGGCTGTTCAATAACCACTCCATCTACCAGTGGATA
CCATCGGTCAAGGGGTTCGCCATGGGCTTCATGAAGTCGAAGATAGACAC
CAAAATATTCACTATGGAGGGCAGTCCCGGTGTTATATCGATAAAGAATC
CCGACTGGAACATGACGGGGGAGTACACCTGTGCAGTGCAGACCTTCGAG
TCCACGGATAAGCGGAGTGCCCGCCTGCAAATAATCGTTCCTGAATCGGA
TTTCATGCTGGAAGCGCGGATGAGCGGTTCGCGTATGGACGTGGACATCA
TGTGTGCGGTCCAGCACGTCTTCCCGCAACCCATGCTGTCTGTCATGTTT
GACACCCACATACTGGACTCGGTACTGACGCAGTTGGACCAGGACCCCAG
TGGCCTCTACAGCATGACCGTTCGCACCCGCATTCCTAGAGATCAACTCG
AGTCCCCCACCCCAATCACCTGTGCGTTTATCCTAGTTGGCACCAACTAC
ACCAAGCGCCGGGAGACTATTTTCTATGATAAGGCCTCAACTATACAACG
CAAGTGGACAACGGTCGCCGTAGTCATGTCCATCGCATCCTTAGCTCTAA
GCAGTTAGAAGCTTTCTAGACCAT

BS12031.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:00:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG13532-RA 792 CG13532-PA 1..792 17..808 3960 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:00:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG13532-RA 1918 CG13532-RA 606..1398 16..808 3965 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:00:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22871941..22872136 80..275 980 100 Plus
2R 25286936 2R 22873455..22873641 547..733 920 99.5 Plus
2R 25286936 2R 22872229..22872392 274..437 820 100 Plus
2R 25286936 2R 22873267..22873378 437..548 560 100 Plus
2R 25286936 2R 22873827..22873907 728..808 405 100 Plus
2R 25286936 2R 22871795..22871859 16..80 325 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:00:25 has no hits.

BS12031.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:02 Download gff for BS12031.complete
Subject Subject Range Query Range Percent Splice Strand
CG13532-RA 1..792 17..808 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:14 Download gff for BS12031.complete
Subject Subject Range Query Range Percent Splice Strand
CG13532-RA 496..1299 8..815 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:43:32 Download gff for BS12031.complete
Subject Subject Range Query Range Percent Splice Strand
CG13532-RA 607..1398 17..808 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:02 Download gff for BS12031.complete
Subject Subject Range Query Range Percent Splice Strand
CG13532-RA 496..1299 8..815 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:48:20 Download gff for BS12031.complete
Subject Subject Range Query Range Percent Splice Strand
CG13532-RA 607..1398 17..808 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:48:20 Download gff for BS12031.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22872230..22872392 275..437 100 -> Plus
2R 22873268..22873376 438..546 100 -> Plus
2R 22873455..22873636 547..728 100 -> Plus
2R 22873828..22873907 729..808 100   Plus
2R 22871942..22872135 81..274 100 -> Plus
2R 22871796..22871859 17..80 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:43:32 Download gff for BS12031.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18759319..18759382 17..80 100 -> Plus
arm_2R 18759465..18759658 81..274 100 -> Plus
arm_2R 18759753..18759915 275..437 100 -> Plus
arm_2R 18760791..18760899 438..546 100 -> Plus
arm_2R 18760978..18761159 547..728 100 -> Plus
arm_2R 18761351..18761430 729..808 100   Plus

BS12031.pep Sequence

Translation from 16 to 807

> BS12031.pep
MAGWRGRGLRATLLAVLALLSVTHSVRITNLRVPRTYTLFRDHEPDPLVL
DCEVEIGPREQGFVLKWLFNNHSIYQWIPSVKGFAMGFMKSKIDTKIFTM
EGSPGVISIKNPDWNMTGEYTCAVQTFESTDKRSARLQIIVPESDFMLEA
RMSGSRMDVDIMCAVQHVFPQPMLSVMFDTHILDSVLTQLDQDPSGLYSM
TVRTRIPRDQLESPTPITCAFILVGTNYTKRRETIFYDKASTIQRKWTTV
AVVMSIASLALSS*

BS12031.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG13532-PA 263 CG13532-PA 1..263 1..263 1364 100 Plus
CG5597-PA 260 CG5597-PA 33..173 39..177 168 27.6 Plus