BS12037.complete Sequence
2111 bp assembled on 2009-12-07
GenBank Submission: KX805061
> BS12037.complete
GAAGTTATCAGTCGACATGTCGGAGGCTACCATTGAGCTGGACTCGAGCA
TCGCCGTGGCACCCAAGTGCTCCAATGTGAACAACAACAATAGTGCCCGC
TCCAGTCGGGTGGGCAGCTCCATCTCCGGACCGGATTCGGATGCGGAGTG
CCAGCGATTTGGATGGTGCGGCTGGAATCCGGCGTGGCTACAGCGCTTCT
GCACCGCCAAATGGGCTCTTTTCTGGCTCTGCTGGGGCGGTGCTCTCCAA
GGTCTCATCGTGAACGGCCTGATCAATGTGTCCATCTCCACCATCGAGCG
TCGCTTTGGACTTCGCTCCCGGCAAATGGGACTGGTGGCCAGTGGCTACG
ATCTGGCCTCCTTCGCCTGCCTAGTACCAGTTACCTACTACGGCGGACGA
CGTGGTGCCTCCAAGCCGCGCTTCATCGCCATCGGACTGATTGTGATGGG
CATGGGATCGCTGGTCTTCCTGCTGCCCAATTTCCTGGTGGGTAACTACC
GGGCCACTATTGCCGAGGCCAATGTGTGCGAGACAACGGGATTGCCGTTC
AACTCCAACTCCAGCCAGTCGATGACCGCTTGCGAACTGAACGCAATGGG
GGAGGGGCAGAGCGAGAATCTGACCTGGACGGTGTGGCTCTTCCTGGCCG
CCCAATTGCTCCACGGTGCCGGAGCATCGCCCCTCTTTACGCTGGGCGTC
ACATATATCGATGAGAACGTCTCAAAGAAGATGTCATCTGTTTACTTGGG
CATCTACTACACAATGGCCACCGTTGGACCAGCGATTGGCTATGTATTCG
GTGGACAACTGCTGCTCATCTATACGGATTGGATGACCGTGGATCCCGTT
CAACTCAGCCTGACCAGCGACAGCAAGGTGTGGATTGGAGCCTGGTGGCT
GGGCTTCATTTTCGCAGCCGCCATGTGTCTGCTCATCGCCTTGCCCATTT
TCGGATATCCCAAGTTGCTGCCCGGCGCGGAGAAGTTGCAGCTGGAAAGG
GTTTCCGAGGCACATGCCACCATATCGGAAGCGGATGACTCCAGTAATGT
GGTCAGGGGACTGCCACGTGCGGTGCTCAGCCTGCTGGCTAATCCCACCT
TCTTTTTCCTGAACCTGGCCGGTGCCACGGAGGGTCTGGTGATAGCCGGA
TTTGCCGCCTTCCTGCCCAAACAGATCGAGAATCAGTTCAGCATTTCGCC
CATGTACTCGGCATTGGTGATGGGTCTGATTACGGTGCCAGCTGGAGGCG
GTGGCACCTTTCTCGGTGGCTACTTGGTCAAGAAATGGAATCTTGCCTGT
AGAGGAATCATCAAAATGTGCCTGTTGGCCACCACGGTGGCGGCACTCTT
TACCATCTGCTTTCTGGTCTCTTGTCCGAATCCGAAGTTTGCCGGCGTCA
CCACGGGCTATAAAATGCAGCCCAGTAGCGATTCTCCCGCCTTGGTGGCA
AGTTGCAATTCCAACTGCGGCTGCAGTCGCACCAACTACGATCCCATCTG
TGGCGTCGATGGCGTCATGTACTACAGTCCATGCTACGCAGGATGCGTCC
AGGAGGAGCACGCGAACAGCCTGAAGCGCTACCACAACTGCAGCTGCATC
GAGCAAGTTGGTTTTGTGGACGATGGCAACCCGTCCTCGGAAGCCCCCCA
TTTCCGGCCAGATGCCACCAACCGAAAGTGCGACTCCACGTGCCAGACCC
TGCCGCTCTTCGTGGCGCTCTGCTTCATCCTGATGGTCTTCACGTTTCTC
GCCACCATGCCCGCGCTGTCGGCTACACTGAGATGCGTTCAGGATGATCA
GCGATCATTTGCGTTGGGTTTGCAGTGGATAAAAGTGCGACTACTGGGCA
CCATACCAGCTCCATTGATTTTCGGAGCCCTGATCGACGAATCCTGCATT
TTGTGGCAAGAGTCCTGCGACAAGGACGCCGGAGGAGCTTGTCTAGTCTA
CGATAATTTCTATATCAGCCGATATATGTGGCTACTGGCGTTGATCTGCA
AACTGGGATCCGTGGTCTTTTTTGCTTGCGCCTGGTGGTTTTATGTGCCA
CCCAGTAAGCCATTGAATGCAAATGGAAAGGAAGATGTTAATTGAAAGCT
TTCTAGACCAT
BS12037.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:11:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oatp26F-RA | 2079 | CG31634-PA | 1..2079 | 17..2095 | 10395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:11:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oatp26F-RA | 2418 | CG31634-RA | 89..2168 | 16..2095 | 10400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:11:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6625833..6626762 | 1782..853 | 4650 | 100 | Minus |
| 2L | 23513712 | 2L | 6628746..6629070 | 574..250 | 1625 | 100 | Minus |
| 2L | 23513712 | 2L | 6632082..6632319 | 253..16 | 1190 | 100 | Minus |
| 2L | 23513712 | 2L | 6625577..6625771 | 1975..1781 | 960 | 99.5 | Minus |
| 2L | 23513712 | 2L | 6628515..6628691 | 750..574 | 885 | 100 | Minus |
| 2L | 23513712 | 2L | 6625388..6625512 | 2095..1971 | 625 | 100 | Minus |
| 2L | 23513712 | 2L | 6627501..6627604 | 852..749 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:11:47 has no hits.
BS12037.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:47 Download gff for
BS12037.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oatp26F-RA | 87..2164 | 17..2094 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:08:22 Download gff for
BS12037.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oatp26F-RA | 90..2167 | 17..2094 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:21:18 Download gff for
BS12037.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oatp26F-RA | 87..2164 | 17..2094 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:06 Download gff for
BS12037.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oatp26F-RA | 90..2167 | 17..2094 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:06 Download gff for
BS12037.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6625389..6625511 | 1972..2094 | 100 | <- | Minus |
| 2L | 6625581..6625769 | 1783..1971 | 100 | <- | Minus |
| 2L | 6625833..6626762 | 853..1782 | 100 | <- | Minus |
| 2L | 6627501..6627603 | 750..852 | 100 | <- | Minus |
| 2L | 6628516..6628690 | 575..749 | 100 | <- | Minus |
| 2L | 6628746..6629068 | 252..574 | 100 | <- | Minus |
| 2L | 6632084..6632318 | 17..251 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:08:22 Download gff for
BS12037.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6625581..6625769 | 1783..1971 | 100 | <- | Minus |
| arm_2L | 6625389..6625511 | 1972..2094 | 100 | <- | Minus |
| arm_2L | 6625833..6626762 | 853..1782 | 100 | <- | Minus |
| arm_2L | 6627501..6627603 | 750..852 | 100 | <- | Minus |
| arm_2L | 6628516..6628690 | 575..749 | 100 | <- | Minus |
| arm_2L | 6628746..6629068 | 252..574 | 100 | <- | Minus |
| arm_2L | 6632084..6632318 | 17..251 | 100 | | Minus |
BS12037.pep Sequence
Translation from 16 to 2094
> BS12037.pep
MSEATIELDSSIAVAPKCSNVNNNNSARSSRVGSSISGPDSDAECQRFGW
CGWNPAWLQRFCTAKWALFWLCWGGALQGLIVNGLINVSISTIERRFGLR
SRQMGLVASGYDLASFACLVPVTYYGGRRGASKPRFIAIGLIVMGMGSLV
FLLPNFLVGNYRATIAEANVCETTGLPFNSNSSQSMTACELNAMGEGQSE
NLTWTVWLFLAAQLLHGAGASPLFTLGVTYIDENVSKKMSSVYLGIYYTM
ATVGPAIGYVFGGQLLLIYTDWMTVDPVQLSLTSDSKVWIGAWWLGFIFA
AAMCLLIALPIFGYPKLLPGAEKLQLERVSEAHATISEADDSSNVVRGLP
RAVLSLLANPTFFFLNLAGATEGLVIAGFAAFLPKQIENQFSISPMYSAL
VMGLITVPAGGGGTFLGGYLVKKWNLACRGIIKMCLLATTVAALFTICFL
VSCPNPKFAGVTTGYKMQPSSDSPALVASCNSNCGCSRTNYDPICGVDGV
MYYSPCYAGCVQEEHANSLKRYHNCSCIEQVGFVDDGNPSSEAPHFRPDA
TNRKCDSTCQTLPLFVALCFILMVFTFLATMPALSATLRCVQDDQRSFAL
GLQWIKVRLLGTIPAPLIFGALIDESCILWQESCDKDAGGACLVYDNFYI
SRYMWLLALICKLGSVVFFACAWWFYVPPSKPLNANGKEDVN*
BS12037.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:34:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oatp26F-PA | 692 | CG31634-PA | 1..692 | 1..692 | 3684 | 100 | Plus |
| Oatp30B-PD | 1136 | CG3811-PD | 66..798 | 27..686 | 945 | 32.7 | Plus |
| Oatp30B-PC | 1197 | CG3811-PC | 127..859 | 27..686 | 945 | 32.7 | Plus |
| Oatp30B-PB | 1197 | CG3811-PB | 127..859 | 27..686 | 945 | 32.7 | Plus |
| Oatp30B-PA | 1197 | CG3811-PA | 127..859 | 27..686 | 945 | 32.7 | Plus |
