Clone BS12038 Report

Search the DGRC for BS12038

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:120
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCpr78Cc-RA
Protein status:BS12038.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12038.3prime Sequence

390 bp (390 high quality bases) assembled on 2006-06-16

> BS12038.3prime
ATGGTCTAGAAAGCTTTTAGGGCTGTGGAGGGTGGGCGGCGATGTATTCC
AGGGCGCGGAGGATGGCCTCCGGGATTGGGGGAGCGGTGGGAAGGTGATC
GCCCTGAGGCTGGAAGCCGTTTTCATCGGCGACGTAGGTCAGTGAGATGG
GGACGCCTTCGGGGGAGATGTAAGAGCTGCTTCCGCTAATGCCATTGACG
TTTCCGGCCTCCTGGGCCTGAATACCATTGCTGGTCTCGAAGGCGTATTG
GTAGTTGCCCTCGGCGTCGGCAGGATTAACATCCTCGCGGGTGATCACGG
CATCCTTGTTTATGTTGTCCGCATACACATTGGCCAGCATCAGAGCGGCG
AGCAGGCAGAGCGATAGCTTAAACATGTCGACTGATAACT

BS12038.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7658-PA 360 CG7658-RA 1..360 376..17 1800 100 Minus
CG7673-PA 369 Edg78E-RA 106..143 262..225 140 94.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:03:07
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr78Cc-RA 522 CG7658-RA 42..402 376..16 1805 100 Minus
Edg78E-RB 546 CG7673-RB 174..403 270..41 250 75 Minus
Edg78E-RA 967 CG7673-RA 174..403 270..41 250 75 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:03:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21300703..21301051 364..16 1745 100 Minus
3L 28110227 3L 21297327..21297556 41..270 250 73.9 Plus
3L 28110227 3L 6161392..6161450 145..87 190 88.1 Minus
Blast to na_te.dros performed on 2015-02-12 11:03:05 has no hits.

BS12038.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:39 Download gff for BS12038.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7658-PA 1..360 17..376 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:23 Download gff for BS12038.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr78Cc-RA 35..402 16..384 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:16:04 Download gff for BS12038.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr78Cc-RA 35..402 16..384 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:16:04 Download gff for BS12038.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21300703..21301051 16..364 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:23 Download gff for BS12038.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21293803..21294151 16..364 100   Minus

BS12038.5prime Sequence

390 bp (390 high quality bases) assembled on 2006-06-16

> BS12038.5prime
GAAGTTATCAGTCGACATGTTTAAGCTATCGCTCTGCCTGCTCGCCGCTC
TGATGCTGGCCAATGTGTATGCGGACAACATAAACAAGGATGCCGTGATC
ACCCGCGAGGATGTTAATCCTGCCGACGCCGAGGGCAACTACCAATACGC
CTTCGAGACCAGCAATGGTATTCAGGCCCAGGAGGCCGGAAACGTCAATG
GCATTAGCGGAAGCAGCTCTTACATCTCCCCCGAAGGCGTCCCCATCTCA
CTGACCTACGTCGCCGATGAAAACGGCTTCCAGCCTCAGGGCGATCACCT
TCCCACCGCTCCCCCAATCCCGGAGGCCATCCTCCGCGCCCTGGAATACA
TCGCCGCCCACCCTCCACAGCCCTAAAAGCTTTCTAGACC

BS12038.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7658-PA 360 CG7658-RA 1..360 17..376 1800 100 Plus
CG7673-PA 369 Edg78E-RA 106..143 131..168 140 94.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:44:53
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr78Cc-RA 522 CG7658-RA 42..402 17..377 1805 100 Plus
Edg78E-RB 546 CG7673-RB 174..403 123..352 250 75 Plus
Edg78E-RA 967 CG7673-RA 174..403 123..352 250 75 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21300703..21301051 29..377 1745 100 Plus
3L 28110227 3L 21297327..21297556 352..123 250 73.9 Minus
3L 28110227 3L 6161392..6161450 248..306 190 88.1 Plus
Blast to na_te.dros performed on 2015-02-08 11:44:49 has no hits.

BS12038.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:40 Download gff for BS12038.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7658-PA 1..360 17..376 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:35 Download gff for BS12038.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr78Cc-RA 35..402 9..377 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:56 Download gff for BS12038.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr78Cc-RA 35..402 9..377 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:56 Download gff for BS12038.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21300703..21301051 29..377 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:35 Download gff for BS12038.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21293803..21294151 29..377 100   Plus

BS12038.complete Sequence

392 bp assembled on 2006-11-01

GenBank Submission: FJ637042

> BS12038.complete
GAAGTTATCAGTCGACATGTTTAAGCTATCGCTCTGCCTGCTCGCCGCTC
TGATGCTGGCCAATGTGTATGCGGACAACATAAACAAGGATGCCGTGATC
ACCCGCGAGGATGTTAATCCTGCCGACGCCGAGGGCAACTACCAATACGC
CTTCGAGACCAGCAATGGTATTCAGGCCCAGGAGGCCGGAAACGTCAATG
GCATTAGCGGAAGCAGCTCTTACATCTCCCCCGAAGGCGTCCCCATCTCA
CTGACCTACGTCGCCGATGAAAACGGCTTCCAGCCTCAGGGCGATCACCT
TCCCACCGCTCCCCCAATCCCGGAGGCCATCCTCCGCGCCCTGGAATACA
TCGCCGCCCACCCTCCACAGCCCTAAAAGCTTTCTAGACCAT

BS12038.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:04:19
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr78Cc-RA 360 CG7658-PA 1..360 17..376 1800 100 Plus
Edg78E-RB 369 CG7673-PB 98..327 123..352 250 73.9 Plus
Edg78E-RA 369 CG7673-PA 98..327 123..352 250 73.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:19
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr78Cc-RA 522 CG7658-RA 42..402 17..377 1805 100 Plus
Edg78E-RB 546 CG7673-RB 174..403 123..352 250 73.9 Plus
Edg78E-RA 967 CG7673-RA 174..403 123..352 250 73.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21300703..21301051 29..377 1745 100 Plus
3L 28110227 3L 21297327..21297556 352..123 250 73.9 Minus
3L 28110227 3L 6161392..6161450 248..306 190 88.1 Plus
Blast to na_te.dros performed on 2014-11-27 16:04:18 has no hits.

BS12038.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:37 Download gff for BS12038.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr78Cc-RA 1..360 17..376 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:32 Download gff for BS12038.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr78Cc-RA 27..394 9..377 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:37 Download gff for BS12038.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr78Cc-RA 48..399 23..374 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:37 Download gff for BS12038.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr78Cc-RA 27..394 9..377 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:41 Download gff for BS12038.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr78Cc-RA 48..399 23..374 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:41 Download gff for BS12038.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21300700..21301048 23..374 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:37 Download gff for BS12038.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21293800..21294148 23..374 98   Plus

BS12038.pep Sequence

Translation from 16 to 375

> BS12038.pep
MFKLSLCLLAALMLANVYADNINKDAVITREDVNPADAEGNYQYAFETSN
GIQAQEAGNVNGISGSSSYISPEGVPISLTYVADENGFQPQGDHLPTAPP
IPEAILRALEYIAAHPPQP*

BS12038.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:26:21
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr78Cc-PA 119 CG7658-PA 1..119 1..119 616 100 Plus
Edg78E-PB 122 CG7673-PB 1..116 1..119 371 60.5 Plus
Edg78E-PA 122 CG7673-PA 1..116 1..119 371 60.5 Plus
Cpr49Aa-PB 144 CG30045-PB 43..132 39..119 269 56.7 Plus
Cpr67Fa2-PA 134 CG18349-PA 6..117 8..116 264 53 Plus