Clone Sequence Records
BS12038.3prime Sequence
390 bp (390 high quality bases) assembled on 2006-06-16
> BS12038.3prime
ATGGTCTAGAAAGCTTTTAGGGCTGTGGAGGGTGGGCGGCGATGTATTCC
AGGGCGCGGAGGATGGCCTCCGGGATTGGGGGAGCGGTGGGAAGGTGATC
GCCCTGAGGCTGGAAGCCGTTTTCATCGGCGACGTAGGTCAGTGAGATGG
GGACGCCTTCGGGGGAGATGTAAGAGCTGCTTCCGCTAATGCCATTGACG
TTTCCGGCCTCCTGGGCCTGAATACCATTGCTGGTCTCGAAGGCGTATTG
GTAGTTGCCCTCGGCGTCGGCAGGATTAACATCCTCGCGGGTGATCACGG
CATCCTTGTTTATGTTGTCCGCATACACATTGGCCAGCATCAGAGCGGCG
AGCAGGCAGAGCGATAGCTTAAACATGTCGACTGATAACT
BS12038.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7658-PA | 360 | CG7658-RA | 1..360 | 376..17 | 1800 | 100 | Minus |
CG7673-PA | 369 | Edg78E-RA | 106..143 | 262..225 | 140 | 94.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:03:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr78Cc-RA | 522 | CG7658-RA | 42..402 | 376..16 | 1805 | 100 | Minus |
Edg78E-RB | 546 | CG7673-RB | 174..403 | 270..41 | 250 | 75 | Minus |
Edg78E-RA | 967 | CG7673-RA | 174..403 | 270..41 | 250 | 75 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:03:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21300703..21301051 | 364..16 | 1745 | 100 | Minus |
3L | 28110227 | 3L | 21297327..21297556 | 41..270 | 250 | 73.9 | Plus |
3L | 28110227 | 3L | 6161392..6161450 | 145..87 | 190 | 88.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:03:05 has no hits.
BS12038.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:39 Download gff for
BS12038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7658-PA | 1..360 | 17..376 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:23 Download gff for
BS12038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr78Cc-RA | 35..402 | 16..384 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:16:04 Download gff for
BS12038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr78Cc-RA | 35..402 | 16..384 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:16:04 Download gff for
BS12038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21300703..21301051 | 16..364 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:23 Download gff for
BS12038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21293803..21294151 | 16..364 | 100 | | Minus |
BS12038.5prime Sequence
390 bp (390 high quality bases) assembled on 2006-06-16
> BS12038.5prime
GAAGTTATCAGTCGACATGTTTAAGCTATCGCTCTGCCTGCTCGCCGCTC
TGATGCTGGCCAATGTGTATGCGGACAACATAAACAAGGATGCCGTGATC
ACCCGCGAGGATGTTAATCCTGCCGACGCCGAGGGCAACTACCAATACGC
CTTCGAGACCAGCAATGGTATTCAGGCCCAGGAGGCCGGAAACGTCAATG
GCATTAGCGGAAGCAGCTCTTACATCTCCCCCGAAGGCGTCCCCATCTCA
CTGACCTACGTCGCCGATGAAAACGGCTTCCAGCCTCAGGGCGATCACCT
TCCCACCGCTCCCCCAATCCCGGAGGCCATCCTCCGCGCCCTGGAATACA
TCGCCGCCCACCCTCCACAGCCCTAAAAGCTTTCTAGACC
BS12038.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7658-PA | 360 | CG7658-RA | 1..360 | 17..376 | 1800 | 100 | Plus |
CG7673-PA | 369 | Edg78E-RA | 106..143 | 131..168 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:44:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr78Cc-RA | 522 | CG7658-RA | 42..402 | 17..377 | 1805 | 100 | Plus |
Edg78E-RB | 546 | CG7673-RB | 174..403 | 123..352 | 250 | 75 | Plus |
Edg78E-RA | 967 | CG7673-RA | 174..403 | 123..352 | 250 | 75 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:44:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21300703..21301051 | 29..377 | 1745 | 100 | Plus |
3L | 28110227 | 3L | 21297327..21297556 | 352..123 | 250 | 73.9 | Minus |
3L | 28110227 | 3L | 6161392..6161450 | 248..306 | 190 | 88.1 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:44:49 has no hits.
BS12038.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:40 Download gff for
BS12038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7658-PA | 1..360 | 17..376 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:35 Download gff for
BS12038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr78Cc-RA | 35..402 | 9..377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:56 Download gff for
BS12038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr78Cc-RA | 35..402 | 9..377 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:56 Download gff for
BS12038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21300703..21301051 | 29..377 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:35 Download gff for
BS12038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21293803..21294151 | 29..377 | 100 | | Plus |
BS12038.complete Sequence
392 bp assembled on 2006-11-01
GenBank Submission: FJ637042
> BS12038.complete
GAAGTTATCAGTCGACATGTTTAAGCTATCGCTCTGCCTGCTCGCCGCTC
TGATGCTGGCCAATGTGTATGCGGACAACATAAACAAGGATGCCGTGATC
ACCCGCGAGGATGTTAATCCTGCCGACGCCGAGGGCAACTACCAATACGC
CTTCGAGACCAGCAATGGTATTCAGGCCCAGGAGGCCGGAAACGTCAATG
GCATTAGCGGAAGCAGCTCTTACATCTCCCCCGAAGGCGTCCCCATCTCA
CTGACCTACGTCGCCGATGAAAACGGCTTCCAGCCTCAGGGCGATCACCT
TCCCACCGCTCCCCCAATCCCGGAGGCCATCCTCCGCGCCCTGGAATACA
TCGCCGCCCACCCTCCACAGCCCTAAAAGCTTTCTAGACCAT
BS12038.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:04:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr78Cc-RA | 360 | CG7658-PA | 1..360 | 17..376 | 1800 | 100 | Plus |
Edg78E-RB | 369 | CG7673-PB | 98..327 | 123..352 | 250 | 73.9 | Plus |
Edg78E-RA | 369 | CG7673-PA | 98..327 | 123..352 | 250 | 73.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr78Cc-RA | 522 | CG7658-RA | 42..402 | 17..377 | 1805 | 100 | Plus |
Edg78E-RB | 546 | CG7673-RB | 174..403 | 123..352 | 250 | 73.9 | Plus |
Edg78E-RA | 967 | CG7673-RA | 174..403 | 123..352 | 250 | 73.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21300703..21301051 | 29..377 | 1745 | 100 | Plus |
3L | 28110227 | 3L | 21297327..21297556 | 352..123 | 250 | 73.9 | Minus |
3L | 28110227 | 3L | 6161392..6161450 | 248..306 | 190 | 88.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:04:18 has no hits.
BS12038.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:37 Download gff for
BS12038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr78Cc-RA | 1..360 | 17..376 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:32 Download gff for
BS12038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr78Cc-RA | 27..394 | 9..377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:37 Download gff for
BS12038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr78Cc-RA | 48..399 | 23..374 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:37 Download gff for
BS12038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr78Cc-RA | 27..394 | 9..377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:41 Download gff for
BS12038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr78Cc-RA | 48..399 | 23..374 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:41 Download gff for
BS12038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21300700..21301048 | 23..374 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:37 Download gff for
BS12038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21293800..21294148 | 23..374 | 98 | | Plus |
BS12038.pep Sequence
Translation from 16 to 375
> BS12038.pep
MFKLSLCLLAALMLANVYADNINKDAVITREDVNPADAEGNYQYAFETSN
GIQAQEAGNVNGISGSSSYISPEGVPISLTYVADENGFQPQGDHLPTAPP
IPEAILRALEYIAAHPPQP*
BS12038.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:26:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr78Cc-PA | 119 | CG7658-PA | 1..119 | 1..119 | 616 | 100 | Plus |
Edg78E-PB | 122 | CG7673-PB | 1..116 | 1..119 | 371 | 60.5 | Plus |
Edg78E-PA | 122 | CG7673-PA | 1..116 | 1..119 | 371 | 60.5 | Plus |
Cpr49Aa-PB | 144 | CG30045-PB | 43..132 | 39..119 | 269 | 56.7 | Plus |
Cpr67Fa2-PA | 134 | CG18349-PA | 6..117 | 8..116 | 264 | 53 | Plus |