BS12040.complete Sequence
1673 bp assembled on 2008-08-14
GenBank Submission: FJ637043
> BS12040.complete
GAAGTTATCAGTCGACATGCCGTACACACCAGAAAATTCCTACGATAATG
ATCAAAAGATCTGGAGCGGTGAGCCGGTTGTCAAATACTTCGATCCGGAC
TTGTCCATCGGAGAGATAATTTTCCACGAGATGCGGCGGCATCCGCAGCT
TACTGCCCAGATCTCTGCTACGGAGGGTACTGTGTTGACCAGAGGGGAGC
TCCTTGCCAACGCCATGCGCTTGGCCAGCTATATGCGATCATTGGGACTC
CTTCAATCCGATATAGTGGGCCTCATAGGCCGGAATACCACCCACATGCT
TGCCGTAGCCTACGCCTGTTTCTTCAACGGAATAGCTTTTCACTCACTCA
ACATTACATACGATCGCGATACGATCGAAAAGATCTACAAGGTCACAAGG
CCTTCTATTATTTTCTGCGATGGAGATGAGTTTGAGAAGGTTCGATCTGC
CACTGCAGAACTGGATGTTAAGATTGTCACCATGCGCAATCATCCGTTGG
ATTCCATAAAGATCGATGAAGTTGTGGCCACGCCCATCGAAGAAAACTTC
CAGCCAGCTAAGCTGGAAAAGGGCAACGATCAGACTTTGGCCATTCTCTG
CTCTTCGGGAACAACTGGTACTCCAAAGGCAGTAACTATAACTAACAGTC
GGCACATCCTCGCAGGCAACTATCATCTGACCACCGCTGATGTTCAGTAC
TCTCACAACACCCTTGACTGGATCACTGGTTTGCTTACCACCATTACCTC
CGGAGTGTTCAGCACTACCCGCATCATTGCGGACAATGCCTTCGATCCCG
CCTTTGCCTTGCGAATCATCGAAGAGTACAAGGTTACGTGGACCATACAG
CCACCATCATCTATGGCTCTAATGATTAACTGCCCAGATTTCGAGACGTG
CGATCTGTCGAGCCTACGGTGCTACATGTTTGGAGGATCTCGGGCTGCCT
TGGAGGTTCAGAAAGGCATCCGTAGCCGTCTTAGCCATAATTGCCTGCAG
TTTGTTTATGGATTTACAGAACTGGGTGCCATGGCCACCATCAACTGTCA
CTTCGACGAGAAAACCGGATCGGTGGGTCAATTGGTCAATGGGCTAAAGA
TGAAGATAAAAAATGATGACGGCGAATCGCTTGGACCCGATGAGATCGGA
GAGGTGTGCATCATGAATAACCAGCACTGGTCGGGATACTACGGAAACGA
AGTTGAGACTCGTAACATGCGAGATTCACTGGGATGGTATCACTCCGGGG
ACCTCGGATACATGGATCGAGATGGCTTCTTGTACATTATGGACCGAAAG
AAGGAGATGCTGAAGTACCAGAACATCATGTACTATCCAAACGATATTGA
AAGCGTCATCTCAGAGATGCCCCAGGTCGCCGAGGTCTGTGTCTTCGGGA
TATGGAGCAACATCTTTGGAGACGAAGCTGCTGCTGCTGTTGTTAAGAAA
CTGGGCAGTGAGCTGGAGGCCCAGGATGTGGTGGACTATGTGAGGTCTCG
GACTGATTCCAAGTACAAGCAGTTGAACGGAGGAGCCGTCATTGTGGATG
ACCTACAGCGTAGTGCCAATGGAAAGACCAATCGAATGGCCAACAAGGCC
CACTTTTTGCATTTAAAAAATAGGAAAAATATATTACTTAGTCAAATTAA
TACATAAAAGCTTTCTAGACCAT
BS12040.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:11:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11659-RA | 1641 | CG11659-PA | 1..1641 | 17..1657 | 8205 | 100 | Plus |
| CG6300-RA | 1614 | CG6300-PA | 1..1609 | 17..1625 | 7850 | 99.2 | Plus |
| CG11407-RA | 1617 | CG11407-PA | 1..1580 | 17..1596 | 1570 | 73.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:11:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11659-RA | 1705 | CG11659-RA | 51..1691 | 17..1657 | 8205 | 100 | Plus |
| CG6300-RA | 1724 | CG6300-RA | 51..1659 | 17..1625 | 7850 | 99.2 | Plus |
| CG11407-RA | 1789 | CG11407-RA | 63..1642 | 17..1596 | 1570 | 73.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:11:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19775473..19776457 | 1657..673 | 4925 | 100 | Minus |
| 3R | 32079331 | 3R | 19771447..19772399 | 1625..673 | 4630 | 99.1 | Minus |
| 3R | 32079331 | 3R | 19776520..19777033 | 672..159 | 2570 | 100 | Minus |
| 3R | 32079331 | 3R | 19772462..19772975 | 672..159 | 2510 | 99.2 | Minus |
| 3R | 32079331 | 3R | 19781508..19781998 | 158..648 | 940 | 79.4 | Plus |
| 3R | 32079331 | 3R | 19773032..19773175 | 160..17 | 720 | 100 | Minus |
| 3R | 32079331 | 3R | 19777087..19777230 | 160..17 | 720 | 100 | Minus |
| 3R | 32079331 | 3R | 19782082..19782998 | 680..1596 | 550 | 70.7 | Plus |
| 3L | 28110227 | 3L | 5872947..5873261 | 1235..1549 | 300 | 73 | Plus |
| 3R | 32079331 | 3R | 19781308..19781441 | 17..150 | 220 | 77.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:11:15 has no hits.
BS12040.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:46:10 Download gff for
BS12040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11659-RA | 47..1691 | 9..1657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:19:31 Download gff for
BS12040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11659-RA | 51..1689 | 17..1655 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:59:03 Download gff for
BS12040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11659-RA | 51..1689 | 17..1655 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:38 Download gff for
BS12040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11659-RA | 51..1689 | 17..1655 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:38 Download gff for
BS12040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19775475..19776457 | 673..1655 | 100 | <- | Minus |
| 3R | 19776520..19777031 | 161..672 | 100 | <- | Minus |
| 3R | 19777087..19777230 | 17..160 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:19:31 Download gff for
BS12040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15601197..15602179 | 673..1655 | 100 | <- | Minus |
| arm_3R | 15602242..15602753 | 161..672 | 100 | <- | Minus |
| arm_3R | 15602809..15602952 | 17..160 | 100 | | Minus |
BS12040.pep Sequence
Translation from 16 to 1656
> BS12040.pep
MPYTPENSYDNDQKIWSGEPVVKYFDPDLSIGEIIFHEMRRHPQLTAQIS
ATEGTVLTRGELLANAMRLASYMRSLGLLQSDIVGLIGRNTTHMLAVAYA
CFFNGIAFHSLNITYDRDTIEKIYKVTRPSIIFCDGDEFEKVRSATAELD
VKIVTMRNHPLDSIKIDEVVATPIEENFQPAKLEKGNDQTLAILCSSGTT
GTPKAVTITNSRHILAGNYHLTTADVQYSHNTLDWITGLLTTITSGVFST
TRIIADNAFDPAFALRIIEEYKVTWTIQPPSSMALMINCPDFETCDLSSL
RCYMFGGSRAALEVQKGIRSRLSHNCLQFVYGFTELGAMATINCHFDEKT
GSVGQLVNGLKMKIKNDDGESLGPDEIGEVCIMNNQHWSGYYGNEVETRN
MRDSLGWYHSGDLGYMDRDGFLYIMDRKKEMLKYQNIMYYPNDIESVISE
MPQVAEVCVFGIWSNIFGDEAAAAVVKKLGSELEAQDVVDYVRSRTDSKY
KQLNGGAVIVDDLQRSANGKTNRMANKAHFLHLKNRKNILLSQINT*
BS12040.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:11:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11659-PA | 546 | CG11659-PA | 1..546 | 1..546 | 2859 | 100 | Plus |
| CG6300-PA | 537 | CG6300-PA | 1..536 | 1..536 | 2789 | 99.1 | Plus |
| CG11407-PA | 538 | CG11407-PA | 1..535 | 1..535 | 2083 | 72 | Plus |
| CG18586-PB | 545 | CG18586-PB | 16..544 | 8..538 | 1603 | 56.5 | Plus |
| CG5568-PA | 545 | CG5568-PA | 10..544 | 2..536 | 1569 | 54.2 | Plus |
